RNA–Protein interactions for RNA: ENST00000549162.5

SCAF11-212, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 1 (best) BASIC

Gene SCAF11, Length 3,934 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-212ENST00000549162 GLI2P10070 1586 aa8.82□□□□□ -1
SCAF11-212ENST00000549162 FAM135AQ9P2D6 1515 aa8.82□□□□□ -1
SCAF11-212ENST00000549162 ERCC6Q03468 1493 aa8.8□□□□□ -1
SCAF11-212ENST00000549162 CROCC2H7BZ55 1655 aa8.8□□□□□ -1
SCAF11-212ENST00000549162 MAST1Q9Y2H9 1570 aa8.78□□□□□ -1
SCAF11-212ENST00000549162 KIF27Q86VH2 1401 aa8.77□□□□□ -1.01
SCAF11-212ENST00000549162 NEURL4Q96JN8 1562 aa8.77□□□□□ -1.01
SCAF11-212ENST00000549162 RTN4Q9NQC3 1192 aaKnown RBP8.77□□□□□ -1.01
SCAF11-212ENST00000549162 GOLGA3Q08378 1498 aa8.77□□□□□ -1.01
SCAF11-212ENST00000549162 ADRA2BP18089 450 aa8.76□□□□□ -1.01
SCAF11-212ENST00000549162 KIAA0586Q9BVV6 1533 aa8.76□□□□□ -1.01
SCAF11-212ENST00000549162 WDR7Q9Y4E6 1490 aa8.76□□□□□ -1.01
SCAF11-212ENST00000549162 RAPGEF2Q9Y4G8 1499 aa8.76□□□□□ -1.01
SCAF11-212ENST00000549162 GRIN2AQ12879 1464 aa8.75□□□□□ -1.01
SCAF11-212ENST00000549162 REREQ9P2R6 1566 aa8.75□□□□□ -1.01
SCAF11-212ENST00000549162 SNAPC4Q5SXM2 1469 aa8.75□□□□□ -1.01
SCAF11-212ENST00000549162 TNIKQ9UKE5 1360 aa8.74□□□□□ -1.01
SCAF11-212ENST00000549162 CFAP74Q9C0B2 1584 aa8.74□□□□□ -1.01
SCAF11-212ENST00000549162 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.74□□□□□ -1.01
SCAF11-212ENST00000549162 GAPVD1Q14C86 1478 aa8.73□□□□□ -1.01
SCAF11-212ENST00000549162 FYCO1Q9BQS8 1478 aa8.73□□□□□ -1.01
SCAF11-212ENST00000549162 HECW1Q76N89 1606 aa8.72□□□□□ -1.01
SCAF11-212ENST00000549162 MAPKBP1O60336 1514 aa8.72□□□□□ -1.01
SCAF11-212ENST00000549162 ITSN2Q9NZM3 1697 aa8.71□□□□□ -1.01
SCAF11-212ENST00000549162 DISP1Q96F81 1524 aa8.69□□□□□ -1.02
SCAF11-212ENST00000549162 IGF1RP08069 1367 aa8.68□□□□□ -1.02
SCAF11-212ENST00000549162 RAPGEF6Q8TEU7 1601 aa8.68□□□□□ -1.02
SCAF11-212ENST00000549162 MAP3K4Q9Y6R4 1608 aa8.68□□□□□ -1.02
SCAF11-212ENST00000549162 ABCA9Q8IUA7 1624 aa8.68□□□□□ -1.02
SCAF11-212ENST00000549162 SLC4A1APQ9BWU0 796 aaKnown RBP8.67□□□□□ -1.02
SCAF11-212ENST00000549162 CCDC18Q5T9S5 1454 aa8.67□□□□□ -1.02
SCAF11-212ENST00000549162 GCC2Q8IWJ2 1684 aa8.67□□□□□ -1.02
SCAF11-212ENST00000549162 ADGBQ8N7X0 1667 aa8.67□□□□□ -1.02
SCAF11-212ENST00000549162 SENP3Q9H4L4 574 aaPredicted RBP8.66□□□□□ -1.02
SCAF11-212ENST00000549162 TCOF1Q13428 1488 aaKnown RBP8.66□□□□□ -1.02
SCAF11-212ENST00000549162 ARHGEF5Q12774 1597 aa8.66□□□□□ -1.02
SCAF11-212ENST00000549162 ABCC2Q92887 1545 aa8.65□□□□□ -1.03
SCAF11-212ENST00000549162 PREX2Q70Z35 1606 aa8.65□□□□□ -1.03
SCAF11-212ENST00000549162 EIF2AK4Q9P2K8 1649 aaKnown RBP8.65□□□□□ -1.03
SCAF11-212ENST00000549162 KDM5AP29375 1690 aaKnown RBP8.64□□□□□ -1.03
SCAF11-212ENST00000549162 SOGA1O94964 1423 aa8.64□□□□□ -1.03
SCAF11-212ENST00000549162 PABPN1Q86U42 306 aaKnown RBP eCLIP8.64□□□□□ -1.03
SCAF11-212ENST00000549162 AKNAQ7Z591 1439 aa8.64□□□□□ -1.03
SCAF11-212ENST00000549162 TIAM1Q13009 1591 aa8.63□□□□□ -1.03
SCAF11-212ENST00000549162 ARAP1Q96P48 1450 aa8.63□□□□□ -1.03
SCAF11-212ENST00000549162 PLXNC1O60486 1568 aa8.63□□□□□ -1.03
SCAF11-212ENST00000549162 DEPDC5O75140 1603 aa8.62□□□□□ -1.03
SCAF11-212ENST00000549162 PPRC1Q5VV67 1664 aaKnown RBP8.62□□□□□ -1.03
SCAF11-212ENST00000549162 EHBP1L1Q8N3D4 1523 aa8.61□□□□□ -1.03
SCAF11-212ENST00000549162 CASKIN1Q8WXD9 1431 aa8.6□□□□□ -1.03
SCAF11-212ENST00000549162 AMER1Q5JTC6 1135 aaPredicted RBP8.6□□□□□ -1.03
SCAF11-212ENST00000549162 KDM5DQ9BY66 1539 aa8.6□□□□□ -1.03
SCAF11-212ENST00000549162 ZMYM4Q5VZL5 1548 aa8.59□□□□□ -1.03
SCAF11-212ENST00000549162 PTPN23Q9H3S7 1636 aa8.58□□□□□ -1.04
SCAF11-212ENST00000549162 CDC42BPAQ5VT25 1732 aa8.57□□□□□ -1.04
SCAF11-212ENST00000549162 SHANK2Q9UPX8 1470 aa8.57□□□□□ -1.04
SCAF11-212ENST00000549162 PCF11O94913 1555 aaKnown RBP8.56□□□□□ -1.04
SCAF11-212ENST00000549162 SUPT6HQ7KZ85 1726 aaKnown RBP8.56□□□□□ -1.04
SCAF11-212ENST00000549162 ARHGAP35Q9NRY4 1499 aa8.56□□□□□ -1.04
SCAF11-212ENST00000549162 ZCCHC11Q5TAX3 1644 aaKnown RBP8.56□□□□□ -1.04
SCAF11-212ENST00000549162 ZC3H13Q5T200 1668 aaKnown RBP8.55□□□□□ -1.04
SCAF11-212ENST00000549162 MYO5CQ9NQX4 1742 aa8.54□□□□□ -1.04
SCAF11-212ENST00000549162 MAGI2Q86UL8 1455 aa8.54□□□□□ -1.04
SCAF11-212ENST00000549162 RNF17Q9BXT8 1623 aaKnown RBP8.54□□□□□ -1.04
SCAF11-212ENST00000549162 ZNF608Q9ULD9 1512 aaPredicted RBP8.53□□□□□ -1.04
SCAF11-212ENST00000549162 KIF13AQ9H1H9 1805 aa8.53□□□□□ -1.04
SCAF11-212ENST00000549162 KDM5CP41229 1560 aa8.53□□□□□ -1.04
SCAF11-212ENST00000549162 MROH2AA6NES4 1674 aa8.52□□□□□ -1.05
SCAF11-212ENST00000549162 DNAJC5BQ9UF47 199 aa8.52□□□□□ -1.05
SCAF11-212ENST00000549162 RAD54L2Q9Y4B4 1467 aa8.52□□□□□ -1.05
SCAF11-212ENST00000549162 UNC13BO14795 1591 aa8.51□□□□□ -1.05
SCAF11-212ENST00000549162 VWDEQ8N2E2 1590 aa8.51□□□□□ -1.05
SCAF11-212ENST00000549162 INO80Q9ULG1 1556 aaPredicted RBP8.51□□□□□ -1.05
SCAF11-212ENST00000549162 CDC42BPBQ9Y5S2 1711 aa8.51□□□□□ -1.05
SCAF11-212ENST00000549162 ADGRL2O95490 1459 aa8.51□□□□□ -1.05
SCAF11-212ENST00000549162 DNMT1P26358 1616 aaKnown RBP8.51□□□□□ -1.05
SCAF11-212ENST00000549162 ABCC10Q5T3U5 1492 aa8.51□□□□□ -1.05
SCAF11-212ENST00000549162 MROH1Q8NDA8 1641 aa8.5□□□□□ -1.05
SCAF11-212ENST00000549162 VPS8Q8N3P4 1428 aa8.5□□□□□ -1.05
SCAF11-212ENST00000549162 CEP162Q5TB80 1403 aa8.5□□□□□ -1.05
SCAF11-212ENST00000549162 FMN1Q68DA7 1419 aa8.48□□□□□ -1.05
SCAF11-212ENST00000549162 RICTORQ6R327 1708 aa8.48□□□□□ -1.05
SCAF11-212ENST00000549162 RRBP1Q9P2E9 1410 aaKnown RBP8.48□□□□□ -1.05
SCAF11-212ENST00000549162 ACIN1Q9UKV3 1341 aaKnown RBP8.47□□□□□ -1.05
SCAF11-212ENST00000549162 RIMBP3CA6NJZ7 1639 aa8.47□□□□□ -1.05
SCAF11-212ENST00000549162 RIMBP3BA6NNM3 1639 aa8.47□□□□□ -1.05
SCAF11-212ENST00000549162 RIMBP3Q9UFD9 1639 aa8.47□□□□□ -1.05
SCAF11-212ENST00000549162 CAMSAP2Q08AD1 1489 aa8.46□□□□□ -1.05
SCAF11-212ENST00000549162 CARMIL1Q5VZK9 1371 aa8.45□□□□□ -1.06
SCAF11-212ENST00000549162 LAMC1P11047 1609 aa8.45□□□□□ -1.06
SCAF11-212ENST00000549162 MAGI3Q5TCQ9 1506 aa8.45□□□□□ -1.06
SCAF11-212ENST00000549162 MIA2Q96PC5 1412 aa8.44□□□□□ -1.06
SCAF11-212ENST00000549162 PPP6R1Q9UPN7 881 aa8.44□□□□□ -1.06
SCAF11-212ENST00000549162 KIF14Q15058 1648 aa8.43□□□□□ -1.06
SCAF11-212ENST00000549162 LMTK2Q8IWU2 1503 aa8.43□□□□□ -1.06
SCAF11-212ENST00000549162 IQGAP3Q86VI3 1631 aa8.43□□□□□ -1.06
SCAF11-212ENST00000549162 DIP2BQ9P265 1576 aa8.43□□□□□ -1.06
SCAF11-212ENST00000549162 PHLDB1Q86UU1 1377 aa8.43□□□□□ -1.06
SCAF11-212ENST00000549162 EPRSP07814 1512 aaKnown RBP8.42□□□□□ -1.06
SCAF11-212ENST00000549162 POLR1AO95602 1720 aaPredicted RBP8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms