RNA–Protein interactions for RNA: ENST00000548860.5

CACNB3-209, Transcript of calcium voltage-gated channel auxiliary subunit beta 3, humanhuman

TSL 2

Gene CACNB3, Length 4,029 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNB3-209ENST00000548860 DHX57Q6P158 1386 aaKnown RBP19.88■□□□□ 0.77
CACNB3-209ENST00000548860 CUX2O14529 1486 aa19.88■□□□□ 0.77
CACNB3-209ENST00000548860 FOXD1Q16676 465 aa19.85■□□□□ 0.77
CACNB3-209ENST00000548860 RAB3GAP2Q9H2M9 1393 aa19.84■□□□□ 0.77
CACNB3-209ENST00000548860 SALL2Q9Y467 1007 aaPredicted RBP19.82■□□□□ 0.76
CACNB3-209ENST00000548860 MTUS2Q5JR59 1369 aa19.82■□□□□ 0.76
CACNB3-209ENST00000548860 CARMIL1Q5VZK9 1371 aa19.8■□□□□ 0.76
CACNB3-209ENST00000548860 KIF21BO75037 1637 aa19.72■□□□□ 0.75
CACNB3-209ENST00000548860 TDRD9Q8NDG6 1382 aaKnown RBP19.68■□□□□ 0.74
CACNB3-209ENST00000548860 MYT1LQ9UL68 1186 aa19.68■□□□□ 0.74
CACNB3-209ENST00000548860 ARAP1Q96P48 1450 aa19.68■□□□□ 0.74
CACNB3-209ENST00000548860 FHOD3Q2V2M9 1422 aa19.68■□□□□ 0.74
CACNB3-209ENST00000548860 KDM2AQ9Y2K7 1162 aa19.67■□□□□ 0.74
CACNB3-209ENST00000548860 MRS2Q9HD23 443 aa19.64■□□□□ 0.73
CACNB3-209ENST00000548860 TSHZ2Q9NRE2 1034 aa19.63■□□□□ 0.73
CACNB3-209ENST00000548860 SETD5Q9C0A6 1442 aa19.62■□□□□ 0.73
CACNB3-209ENST00000548860 CDK11AQ9UQ88 783 aaPredicted RBP19.62■□□□□ 0.73
CACNB3-209ENST00000548860 PEG3Q9GZU2 1588 aa19.6■□□□□ 0.73
CACNB3-209ENST00000548860 CLSPNQ9HAW4 1339 aa19.6■□□□□ 0.73
CACNB3-209ENST00000548860 SLC4A1APQ9BWU0 796 aaKnown RBP19.57■□□□□ 0.72
CACNB3-209ENST00000548860 CUX1P39880 1505 aa19.57■□□□□ 0.72
CACNB3-209ENST00000548860 PPP1R15AO75807 674 aaPredicted RBP19.56■□□□□ 0.72
CACNB3-209ENST00000548860 IGF1RP08069 1367 aa19.56■□□□□ 0.72
CACNB3-209ENST00000548860 PHLDB1Q86UU1 1377 aa19.56■□□□□ 0.72
CACNB3-209ENST00000548860 DNAJC5BQ9UF47 199 aa19.53■□□□□ 0.72
CACNB3-209ENST00000548860 EIF4G2P78344 907 aaKnown RBP eCLIP19.53■□□□□ 0.72
CACNB3-209ENST00000548860 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.52■□□□□ 0.71
CACNB3-209ENST00000548860 TOP2BQ02880 1626 aa19.51■□□□□ 0.71
CACNB3-209ENST00000548860 HSPA5P11021 654 aaKnown RBP19.5■□□□□ 0.71
CACNB3-209ENST00000548860 B4GALNT3Q6L9W6 998 aa19.5■□□□□ 0.71
CACNB3-209ENST00000548860 NPM2Q86SE8 214 aaKnown RBP19.5■□□□□ 0.71
CACNB3-209ENST00000548860 RAD54L2Q9Y4B4 1467 aa19.49■□□□□ 0.71
CACNB3-209ENST00000548860 NCAPD3P42695 1498 aa19.48■□□□□ 0.71
CACNB3-209ENST00000548860 SENP3Q9H4L4 574 aaPredicted RBP19.48■□□□□ 0.71
CACNB3-209ENST00000548860 ARHGAP35Q9NRY4 1499 aa19.47■□□□□ 0.71
CACNB3-209ENST00000548860 RGL3Q3MIN7 710 aa19.46■□□□□ 0.71
CACNB3-209ENST00000548860 CADPSQ9ULU8 1353 aa19.45■□□□□ 0.7
CACNB3-209ENST00000548860 PRXQ9BXM0 1461 aa19.45■□□□□ 0.7
CACNB3-209ENST00000548860 NBR1Q14596 966 aa19.44■□□□□ 0.7
CACNB3-209ENST00000548860 RBM19Q9Y4C8 960 aaKnown RBP19.43■□□□□ 0.7
CACNB3-209ENST00000548860 FHAD1B1AJZ9 1412 aa19.4■□□□□ 0.7
CACNB3-209ENST00000548860 L3MBTL2Q969R5 705 aa19.4■□□□□ 0.7
CACNB3-209ENST00000548860 CFTRP13569 1480 aa19.39■□□□□ 0.69
CACNB3-209ENST00000548860 ANP32EQ9BTT0 268 aa19.38■□□□□ 0.69
CACNB3-209ENST00000548860 FGD5Q6ZNL6 1462 aa19.38■□□□□ 0.69
CACNB3-209ENST00000548860 TMC1Q8TDI8 760 aa19.37■□□□□ 0.69
CACNB3-209ENST00000548860 NESP48681 1621 aa19.37■□□□□ 0.69
CACNB3-209ENST00000548860 CHMP7Q8WUX9 453 aaPredicted RBP19.36■□□□□ 0.69
CACNB3-209ENST00000548860 MPHOSPH9Q99550 1183 aa19.34■□□□□ 0.69
CACNB3-209ENST00000548860 CFDP1Q9UEE9 299 aaPredicted RBP19.34■□□□□ 0.69
CACNB3-209ENST00000548860 ZNF644Q9H582 1327 aaPredicted RBP19.33■□□□□ 0.69
CACNB3-209ENST00000548860 CCDC184Q52MB2 194 aa19.32■□□□□ 0.68
CACNB3-209ENST00000548860 CCDC136Q96JN2 1154 aa19.32■□□□□ 0.68
CACNB3-209ENST00000548860 RRBP1Q9P2E9 1410 aaKnown RBP19.28■□□□□ 0.68
CACNB3-209ENST00000548860 BIVM-ERCC5R4GMW8 1640 aa19.27■□□□□ 0.68
CACNB3-209ENST00000548860 HMGXB3Q12766 1538 aa19.27■□□□□ 0.67
CACNB3-209ENST00000548860 WDR97A6NE52 1622 aa19.27■□□□□ 0.67
CACNB3-209ENST00000548860 LRRC9Q6ZRR7 1453 aa19.27■□□□□ 0.67
CACNB3-209ENST00000548860 FANCD2Q9BXW9 1451 aa19.27■□□□□ 0.67
CACNB3-209ENST00000548860 BCL11AQ9H165 835 aa19.24■□□□□ 0.67
CACNB3-209ENST00000548860 CCER2I3L3R5 266 aa19.24■□□□□ 0.67
CACNB3-209ENST00000548860 ERICH3Q5RHP9 1530 aa19.23■□□□□ 0.67
CACNB3-209ENST00000548860 CARD11Q9BXL7 1154 aa19.22■□□□□ 0.67
CACNB3-209ENST00000548860 TSPY4P0CV99 314 aa19.22■□□□□ 0.67
CACNB3-209ENST00000548860 TSPY10P0CW01 314 aa19.22■□□□□ 0.67
CACNB3-209ENST00000548860 PKD2Q13563 968 aa19.21■□□□□ 0.67
CACNB3-209ENST00000548860 CC2D2AQ9P2K1 1620 aa19.2■□□□□ 0.66
CACNB3-209ENST00000548860 DCAF11Q8TEB1 546 aa19.2■□□□□ 0.66
CACNB3-209ENST00000548860 CCDC18Q5T9S5 1454 aa19.18■□□□□ 0.66
CACNB3-209ENST00000548860 WASHC2AQ641Q2 1341 aa19.17■□□□□ 0.66
CACNB3-209ENST00000548860 RTL5Q5HYW3 569 aaPredicted RBP19.17■□□□□ 0.66
CACNB3-209ENST00000548860 CC2D1BQ5T0F9 858 aaKnown RBP19.16■□□□□ 0.66
CACNB3-209ENST00000548860 TIMELESSQ9UNS1 1208 aa19.16■□□□□ 0.66
CACNB3-209ENST00000548860 FMN1Q68DA7 1419 aa19.14■□□□□ 0.65
CACNB3-209ENST00000548860 CHGAP10645 457 aaKnown RBP19.14■□□□□ 0.65
CACNB3-209ENST00000548860 DAXXQ9UER7 740 aaPredicted RBP19.14■□□□□ 0.65
CACNB3-209ENST00000548860 PLEKHD1A6NEE1 506 aa19.13■□□□□ 0.65
CACNB3-209ENST00000548860 C11orf95C9JLR9 678 aaPredicted RBP19.13■□□□□ 0.65
CACNB3-209ENST00000548860 FGD6Q6ZV73 1430 aa19.13■□□□□ 0.65
CACNB3-209ENST00000548860 PPP4R2Q9NY27 417 aa19.11■□□□□ 0.65
CACNB3-209ENST00000548860 PDS5BQ9NTI5 1447 aa19.11■□□□□ 0.65
CACNB3-209ENST00000548860 ANP32AP39687 249 aaKnown RBP19.1■□□□□ 0.65
CACNB3-209ENST00000548860 NBPF8Q3BBV2 869 aa19.09■□□□□ 0.65
CACNB3-209ENST00000548860 PRKRIP1Q9H875 184 aaPredicted RBP19.09■□□□□ 0.65
CACNB3-209ENST00000548860 HNRNPMP52272 730 aaKnown RBP eCLIP19.08■□□□□ 0.64
CACNB3-209ENST00000548860 AQRO60306 1485 aaKnown RBP eCLIP19.07■□□□□ 0.64
CACNB3-209ENST00000548860 POLA1P09884 1462 aaPredicted RBP19.06■□□□□ 0.64
CACNB3-209ENST00000548860 TIAM1Q13009 1591 aa19.05■□□□□ 0.64
CACNB3-209ENST00000548860 TOPBP1Q92547 1522 aa19.01■□□□□ 0.63
CACNB3-209ENST00000548860 LAS1LQ9Y4W2 734 aaKnown RBP19.01■□□□□ 0.63
CACNB3-209ENST00000548860 ST20-MTHFSA0A0A6YYL1 179 aa19.01■□□□□ 0.63
CACNB3-209ENST00000548860 NCOA2Q15596 1464 aa19■□□□□ 0.63
CACNB3-209ENST00000548860 MAPKBP1O60336 1514 aa19■□□□□ 0.63
CACNB3-209ENST00000548860 ZBTB47Q9UFB7 747 aaPredicted RBP18.99■□□□□ 0.63
CACNB3-209ENST00000548860 NUP155O75694 1391 aa18.99■□□□□ 0.63
CACNB3-209ENST00000548860 PTPRKQ15262 1439 aa18.98■□□□□ 0.63
CACNB3-209ENST00000548860 TNNT2P45379 298 aaPredicted RBP18.98■□□□□ 0.63
CACNB3-209ENST00000548860 KIF7Q2M1P5 1343 aa18.98■□□□□ 0.63
CACNB3-209ENST00000548860 GAPVD1Q14C86 1478 aa18.98■□□□□ 0.63
CACNB3-209ENST00000548860 PCF11O94913 1555 aaKnown RBP18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms