RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 TNNT2P45379 298 aaPredicted RBP17.09■□□□□ 0.33
PTCH1-212ENST00000546744 HSP90AA1P07900 732 aaKnown RBP17.08■□□□□ 0.33
PTCH1-212ENST00000546744 BECN1Q14457 450 aa17.08■□□□□ 0.32
PTCH1-212ENST00000546744 SUPT16HQ9Y5B9 1047 aaKnown RBP17.08■□□□□ 0.32
PTCH1-212ENST00000546744 KIF27Q86VH2 1401 aa17.08■□□□□ 0.32
PTCH1-212ENST00000546744 GOLGA3Q08378 1498 aa17.07■□□□□ 0.32
PTCH1-212ENST00000546744 CFTRP13569 1480 aa17.06■□□□□ 0.32
PTCH1-212ENST00000546744 NEFMP07197 916 aa17.05■□□□□ 0.32
PTCH1-212ENST00000546744 PPP4R2Q9NY27 417 aa17.05■□□□□ 0.32
PTCH1-212ENST00000546744 SLC4A1APQ9BWU0 796 aaKnown RBP17.03■□□□□ 0.32
PTCH1-212ENST00000546744 NOP58Q9Y2X3 529 aaKnown RBP17.03■□□□□ 0.32
PTCH1-212ENST00000546744 PDS5BQ9NTI5 1447 aa17.03■□□□□ 0.32
PTCH1-212ENST00000546744 CEP164Q9UPV0 1460 aa17.03■□□□□ 0.32
PTCH1-212ENST00000546744 TRIM44Q96DX7 344 aaPredicted RBP17.02■□□□□ 0.31
PTCH1-212ENST00000546744 FANCD2Q9BXW9 1451 aa17.01■□□□□ 0.31
PTCH1-212ENST00000546744 MRS2Q9HD23 443 aa17■□□□□ 0.31
PTCH1-212ENST00000546744 FAM9BQ8IZU0 186 aa17■□□□□ 0.31
PTCH1-212ENST00000546744 RUSC2Q8N2Y8 1516 aa17■□□□□ 0.31
PTCH1-212ENST00000546744 TMC1Q8TDI8 760 aa16.99■□□□□ 0.31
PTCH1-212ENST00000546744 TNIKQ9UKE5 1360 aa16.99■□□□□ 0.31
PTCH1-212ENST00000546744 ZNF326Q5BKZ1 582 aaKnown RBP16.98■□□□□ 0.31
PTCH1-212ENST00000546744 CEP162Q5TB80 1403 aa16.98■□□□□ 0.31
PTCH1-212ENST00000546744 CUX2O14529 1486 aa16.98■□□□□ 0.31
PTCH1-212ENST00000546744 SYNJ1O43426 1573 aa16.98■□□□□ 0.31
PTCH1-212ENST00000546744 TIMELESSQ9UNS1 1208 aa16.93■□□□□ 0.3
PTCH1-212ENST00000546744 CLIP1P30622 1438 aa16.93■□□□□ 0.3
PTCH1-212ENST00000546744 ERCC6Q03468 1493 aa16.93■□□□□ 0.3
PTCH1-212ENST00000546744 NESP48681 1621 aa16.93■□□□□ 0.3
PTCH1-212ENST00000546744 GOLGA6L22H0YM25 854 aa16.92■□□□□ 0.3
PTCH1-212ENST00000546744 DEKP35659 375 aaKnown RBP16.91■□□□□ 0.3
PTCH1-212ENST00000546744 DNAJC5BQ9UF47 199 aa16.91■□□□□ 0.3
PTCH1-212ENST00000546744 CCER2I3L3R5 266 aa16.91■□□□□ 0.3
PTCH1-212ENST00000546744 NCLP19338 710 aaKnown RBP16.9■□□□□ 0.3
PTCH1-212ENST00000546744 EIF4G2P78344 907 aaKnown RBP eCLIP16.9■□□□□ 0.34e-7■□□□□ 8.6
PTCH1-212ENST00000546744 P3H3Q8IVL6 736 aa16.89■□□□□ 0.29
PTCH1-212ENST00000546744 RBM19Q9Y4C8 960 aaKnown RBP16.89■□□□□ 0.29
PTCH1-212ENST00000546744 FBLN2P98095 1184 aa16.88■□□□□ 0.29
PTCH1-212ENST00000546744 TOP2BQ02880 1626 aa16.87■□□□□ 0.29
PTCH1-212ENST00000546744 L1TD1Q5T7N2 865 aaKnown RBP16.86■□□□□ 0.29
PTCH1-212ENST00000546744 CUX1P39880 1505 aa16.85■□□□□ 0.29
PTCH1-212ENST00000546744 FGD5Q6ZNL6 1462 aa16.85■□□□□ 0.29
PTCH1-212ENST00000546744 CARMIL1Q5VZK9 1371 aa16.84■□□□□ 0.29
PTCH1-212ENST00000546744 RAPGEF2Q9Y4G8 1499 aa16.8■□□□□ 0.28
PTCH1-212ENST00000546744 TDRD9Q8NDG6 1382 aaKnown RBP16.8■□□□□ 0.28
PTCH1-212ENST00000546744 NAP1L5Q96NT1 182 aaPredicted RBP16.78■□□□□ 0.28
PTCH1-212ENST00000546744 WDR43Q15061 677 aaKnown RBP eCLIP16.78■□□□□ 0.28
PTCH1-212ENST00000546744 TSHZ2Q9NRE2 1034 aa16.77■□□□□ 0.28
PTCH1-212ENST00000546744 IRX6P78412 446 aaPredicted RBP16.76■□□□□ 0.27
PTCH1-212ENST00000546744 LAMC3Q9Y6N6 1575 aa16.76■□□□□ 0.27
PTCH1-212ENST00000546744 USP35Q9P2H5 1018 aa16.75■□□□□ 0.27
PTCH1-212ENST00000546744 RAD54L2Q9Y4B4 1467 aa16.75■□□□□ 0.27
PTCH1-212ENST00000546744 TOPBP1Q92547 1522 aa16.72■□□□□ 0.27
PTCH1-212ENST00000546744 IGF1RP08069 1367 aa16.69■□□□□ 0.26
PTCH1-212ENST00000546744 BIVM-ERCC5R4GMW8 1640 aa16.69■□□□□ 0.26
PTCH1-212ENST00000546744 CHMP7Q8WUX9 453 aaPredicted RBP16.69■□□□□ 0.26
PTCH1-212ENST00000546744 DNMBPQ6XZF7 1577 aa16.68■□□□□ 0.26
PTCH1-212ENST00000546744 PTMSP20962 102 aa16.67■□□□□ 0.26
PTCH1-212ENST00000546744 KIF21BO75037 1637 aa16.66■□□□□ 0.26
PTCH1-212ENST00000546744 POLA1P09884 1462 aaPredicted RBP16.66■□□□□ 0.26
PTCH1-212ENST00000546744 MYH16Q9H6N6 1097 aa16.65■□□□□ 0.26
PTCH1-212ENST00000546744 CDK11BP21127 795 aaKnown RBP16.65■□□□□ 0.26
PTCH1-212ENST00000546744 ARXQ96QS3 562 aa16.64■□□□□ 0.25
PTCH1-212ENST00000546744 TCERG1O14776 1098 aaKnown RBP16.63■□□□□ 0.25
PTCH1-212ENST00000546744 VPS8Q8N3P4 1428 aa16.63■□□□□ 0.25
PTCH1-212ENST00000546744 RSPH6AQ9H0K4 717 aa16.63■□□□□ 0.25
PTCH1-212ENST00000546744 FANCIQ9NVI1 1328 aa16.62■□□□□ 0.25
PTCH1-212ENST00000546744 RTN4Q9NQC3 1192 aaKnown RBP16.62■□□□□ 0.25
PTCH1-212ENST00000546744 LAS1LQ9Y4W2 734 aaKnown RBP16.62■□□□□ 0.25
PTCH1-212ENST00000546744 PTMAP06454 111 aaKnown RBP16.62■□□□□ 0.25
PTCH1-212ENST00000546744 MTUS2Q5JR59 1369 aa16.61■□□□□ 0.25
PTCH1-212ENST00000546744 MRC2Q9UBG0 1479 aa16.6■□□□□ 0.25
PTCH1-212ENST00000546744 GAPVD1Q14C86 1478 aa16.6■□□□□ 0.25
PTCH1-212ENST00000546744 ARID3CA6NKF2 412 aa16.6■□□□□ 0.25
PTCH1-212ENST00000546744 PNNQ9H307 717 aaKnown RBP16.6■□□□□ 0.25
PTCH1-212ENST00000546744 PRXQ9BXM0 1461 aa16.59■□□□□ 0.25
PTCH1-212ENST00000546744 CHMP4BQ9H444 224 aaKnown RBP16.59■□□□□ 0.25
PTCH1-212ENST00000546744 MS4A1P11836 297 aa16.58■□□□□ 0.25
PTCH1-212ENST00000546744 IPO9Q96P70 1041 aaKnown RBP16.58■□□□□ 0.25
PTCH1-212ENST00000546744 ERICH3Q5RHP9 1530 aa16.58■□□□□ 0.24
PTCH1-212ENST00000546744 DNTTIP2Q5QJE6 756 aaKnown RBP16.58■□□□□ 0.24
PTCH1-212ENST00000546744 CFAP44Q96MT7 982 aa16.57■□□□□ 0.24
PTCH1-212ENST00000546744 CDCA8Q53HL2 280 aa16.57■□□□□ 0.24
PTCH1-212ENST00000546744 URB2Q14146 1524 aaKnown RBP16.57■□□□□ 0.24
PTCH1-212ENST00000546744 SALL2Q9Y467 1007 aaPredicted RBP16.57■□□□□ 0.24
PTCH1-212ENST00000546744 PRDM2Q13029 1718 aa16.56■□□□□ 0.24
PTCH1-212ENST00000546744 MSNP26038 577 aaKnown RBP16.55■□□□□ 0.24
PTCH1-212ENST00000546744 B4GALNT3Q6L9W6 998 aa16.55■□□□□ 0.24
PTCH1-212ENST00000546744 ARID4BQ4LE39 1312 aaPredicted RBP16.54■□□□□ 0.24
PTCH1-212ENST00000546744 ABCA10Q8WWZ4 1543 aa16.53■□□□□ 0.24
PTCH1-212ENST00000546744 CHAF1AQ13111 956 aaPredicted RBP16.53■□□□□ 0.24
PTCH1-212ENST00000546744 AQRO60306 1485 aaKnown RBP eCLIP16.52■□□□□ 0.23
PTCH1-212ENST00000546744 CASC1Q6TDU7 716 aa16.51■□□□□ 0.23
PTCH1-212ENST00000546744 FHAD1B1AJZ9 1412 aa16.51■□□□□ 0.23
PTCH1-212ENST00000546744 SLC24A1O60721 1099 aa16.5■□□□□ 0.23
PTCH1-212ENST00000546744 CCNB3Q8WWL7 1395 aa16.5■□□□□ 0.23
PTCH1-212ENST00000546744 NRDCO43847 1150 aa16.48■□□□□ 0.23
PTCH1-212ENST00000546744 HSCBQ8IWL3 235 aa16.45■□□□□ 0.22
PTCH1-212ENST00000546744 TSPY4P0CV99 314 aa16.45■□□□□ 0.22
PTCH1-212ENST00000546744 TSPY10P0CW01 314 aa16.45■□□□□ 0.22
PTCH1-212ENST00000546744 HIRIP3Q9BW71 556 aaPredicted RBP16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms