RNA–Protein interactions for RNA: ENST00000546304.1

PRKDC-211, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-211ENST00000546304 ATAD2BQ9ULI0 1458 aa11.62□□□□□ -0.55
PRKDC-211ENST00000546304 HMGXB3Q12766 1538 aa11.61□□□□□ -0.55
PRKDC-211ENST00000546304 C19orf67A6NJJ6 358 aa11.61□□□□□ -0.55
PRKDC-211ENST00000546304 MNX1P50219 401 aaPredicted RBP11.61□□□□□ -0.55
PRKDC-211ENST00000546304 WIZO95785 1651 aa11.6□□□□□ -0.55
PRKDC-211ENST00000546304 RSF1Q96T23 1441 aaPredicted RBP11.59□□□□□ -0.55
PRKDC-211ENST00000546304 MIER1Q8N108 512 aa11.58□□□□□ -0.56
PRKDC-211ENST00000546304 NCAPD3P42695 1498 aa11.57□□□□□ -0.56
PRKDC-211ENST00000546304 BAZ1BQ9UIG0 1483 aaKnown RBP11.57□□□□□ -0.56
PRKDC-211ENST00000546304 PLEKHG5O94827 1062 aa11.56□□□□□ -0.56
PRKDC-211ENST00000546304 NPM1P06748 294 aaKnown RBP eCLIP11.54□□□□□ -0.56
PRKDC-211ENST00000546304 EVX2Q03828 476 aa11.54□□□□□ -0.56
PRKDC-211ENST00000546304 PLCD3Q8N3E9 789 aa11.53□□□□□ -0.56
PRKDC-211ENST00000546304 SP7Q8TDD2 431 aaPredicted RBP11.51□□□□□ -0.57
PRKDC-211ENST00000546304 TOP2AP11388 1531 aaKnown RBP11.5□□□□□ -0.57
PRKDC-211ENST00000546304 CD44P16070 742 aaKnown RBP11.5□□□□□ -0.57
PRKDC-211ENST00000546304 VASPP50552 380 aaPredicted RBP11.5□□□□□ -0.57
PRKDC-211ENST00000546304 ZBTB47Q9UFB7 747 aaPredicted RBP11.48□□□□□ -0.57
PRKDC-211ENST00000546304 PAK3O75914 559 aaPredicted RBP11.4□□□□□ -0.58
PRKDC-211ENST00000546304 ZRANB1Q9UGI0 708 aa11.39□□□□□ -0.59
PRKDC-211ENST00000546304 ZNF579Q8NAF0 562 aaKnown RBP11.38□□□□□ -0.59
PRKDC-211ENST00000546304 CLCN6P51797 869 aa11.35□□□□□ -0.59
PRKDC-211ENST00000546304 NUBP1P53384 320 aa11.35□□□□□ -0.59
PRKDC-211ENST00000546304 SUPT5HO00267 1087 aaKnown RBP11.34□□□□□ -0.59
PRKDC-211ENST00000546304 RASEFQ8IZ41 740 aa11.34□□□□□ -0.59
PRKDC-211ENST00000546304 GABBR2O75899 941 aa11.32□□□□□ -0.6
PRKDC-211ENST00000546304 IFNLR1Q8IU57 520 aaPredicted RBP11.31□□□□□ -0.6
PRKDC-211ENST00000546304 KLHL34Q8N239 644 aa11.31□□□□□ -0.6
PRKDC-211ENST00000546304 PRDM2Q13029 1718 aa11.3□□□□□ -0.6
PRKDC-211ENST00000546304 LAMC3Q9Y6N6 1575 aa11.3□□□□□ -0.6
PRKDC-211ENST00000546304 CCDC88BA6NC98 1476 aa11.3□□□□□ -0.6
PRKDC-211ENST00000546304 TSPYL2Q9H2G4 693 aaPredicted RBP11.29□□□□□ -0.6
PRKDC-211ENST00000546304 CCDC61Q9Y6R9 512 aa11.28□□□□□ -0.6
PRKDC-211ENST00000546304 PHF12Q96QT6 1004 aa11.26□□□□□ -0.61
PRKDC-211ENST00000546304 NESP48681 1621 aa11.26□□□□□ -0.61
PRKDC-211ENST00000546304 FAM212AQ96EL1 285 aa11.25□□□□□ -0.61
PRKDC-211ENST00000546304 SPOCK2Q92563 424 aa11.23□□□□□ -0.61
PRKDC-211ENST00000546304 CFTRP13569 1480 aa11.23□□□□□ -0.61
PRKDC-211ENST00000546304 KIF21AQ7Z4S6 1674 aa11.22□□□□□ -0.61
PRKDC-211ENST00000546304 CADPSQ9ULU8 1353 aa11.22□□□□□ -0.61
PRKDC-211ENST00000546304 KIF12Q96FN5 646 aa11.19□□□□□ -0.62
PRKDC-211ENST00000546304 DCAF8Q5TAQ9 597 aa11.17□□□□□ -0.62
PRKDC-211ENST00000546304 ERCC6Q03468 1493 aa11.17□□□□□ -0.62
PRKDC-211ENST00000546304 GALR2O43603 387 aaPredicted RBP11.16□□□□□ -0.62
PRKDC-211ENST00000546304 GSE1Q14687 1217 aa11.16□□□□□ -0.62
PRKDC-211ENST00000546304 PDS5BQ9NTI5 1447 aa11.16□□□□□ -0.62
PRKDC-211ENST00000546304 FANCD2Q9BXW9 1451 aa11.14□□□□□ -0.63
PRKDC-211ENST00000546304 THOC2Q8NI27 1593 aaKnown RBP11.14□□□□□ -0.63
PRKDC-211ENST00000546304 CEP164Q9UPV0 1460 aa11.13□□□□□ -0.63
PRKDC-211ENST00000546304 MS4A3Q96HJ5 214 aa11.13□□□□□ -0.63
PRKDC-211ENST00000546304 SGIP1Q9BQI5 828 aa11.12□□□□□ -0.63
PRKDC-211ENST00000546304 MAP3K13O43283 966 aa11.11□□□□□ -0.63
PRKDC-211ENST00000546304 MRC2Q9UBG0 1479 aa11.08□□□□□ -0.64
PRKDC-211ENST00000546304 POTEIP0CG38 1075 aa11.08□□□□□ -0.64
PRKDC-211ENST00000546304 DCBLD2Q96PD2 775 aa11.08□□□□□ -0.64
PRKDC-211ENST00000546304 CHRM1P11229 460 aaPredicted RBP11.07□□□□□ -0.64
PRKDC-211ENST00000546304 WDR62O43379 1518 aa11.07□□□□□ -0.64
PRKDC-211ENST00000546304 PCDHB13Q9Y5F0 798 aa11.06□□□□□ -0.64
PRKDC-211ENST00000546304 PYGBP11216 843 aa11.05□□□□□ -0.64
PRKDC-211ENST00000546304 CIZ1Q9ULV3 898 aaPredicted RBP11.05□□□□□ -0.64
PRKDC-211ENST00000546304 URB2Q14146 1524 aaKnown RBP11.03□□□□□ -0.64
PRKDC-211ENST00000546304 DNMBPQ6XZF7 1577 aa11.03□□□□□ -0.64
PRKDC-211ENST00000546304 IFNL1Q8IU54 200 aa11.02□□□□□ -0.65
PRKDC-211ENST00000546304 TRIM41Q8WV44 630 aa11.01□□□□□ -0.65
PRKDC-211ENST00000546304 CUX2O14529 1486 aa11□□□□□ -0.65
PRKDC-211ENST00000546304 ASTLQ6HA08 431 aaPredicted RBP11□□□□□ -0.65
PRKDC-211ENST00000546304 TOPBP1Q92547 1522 aa10.99□□□□□ -0.65
PRKDC-211ENST00000546304 TIE1P35590 1138 aa10.99□□□□□ -0.65
PRKDC-211ENST00000546304 ABCC8Q09428 1581 aa10.99□□□□□ -0.65
PRKDC-211ENST00000546304 TRPC6Q9Y210 931 aa10.98□□□□□ -0.65
PRKDC-211ENST00000546304 CUX1P39880 1505 aa10.98□□□□□ -0.65
PRKDC-211ENST00000546304 ATMINO43313 823 aaPredicted RBP10.97□□□□□ -0.65
PRKDC-211ENST00000546304 BIVM-ERCC5R4GMW8 1640 aa10.97□□□□□ -0.65
PRKDC-211ENST00000546304 SYNJ1O43426 1573 aa10.96□□□□□ -0.65
PRKDC-211ENST00000546304 ZNF467Q7Z7K2 595 aaPredicted RBP10.96□□□□□ -0.65
PRKDC-211ENST00000546304 TOP2BQ02880 1626 aa10.95□□□□□ -0.66
PRKDC-211ENST00000546304 BMP2KQ9NSY1 1161 aaPredicted RBP10.95□□□□□ -0.66
PRKDC-211ENST00000546304 WRNQ14191 1432 aaPredicted RBP eCLIP10.94□□□□□ -0.66
PRKDC-211ENST00000546304 PCDHB8Q9UN66 801 aa10.94□□□□□ -0.66
PRKDC-211ENST00000546304 TTLL13PA6NNM8 815 aa10.92□□□□□ -0.66
PRKDC-211ENST00000546304 PELP1Q8IZL8 1130 aaKnown RBP10.92□□□□□ -0.66
PRKDC-211ENST00000546304 ATN1P54259 1190 aaPredicted RBP10.91□□□□□ -0.66
PRKDC-211ENST00000546304 POLA1P09884 1462 aaPredicted RBP10.91□□□□□ -0.66
PRKDC-211ENST00000546304 FGD5Q6ZNL6 1462 aa10.91□□□□□ -0.66
PRKDC-211ENST00000546304 WDR97A6NE52 1622 aa10.9□□□□□ -0.66
PRKDC-211ENST00000546304 TARBP1Q13395 1621 aaKnown RBP10.89□□□□□ -0.67
PRKDC-211ENST00000546304 TMEM106CQ9BVX2 250 aa10.88□□□□□ -0.67
PRKDC-211ENST00000546304 IFT140Q96RY7 1462 aa10.87□□□□□ -0.67
PRKDC-211ENST00000546304 SLC39A7Q92504 469 aa10.87□□□□□ -0.67
PRKDC-211ENST00000546304 C7P10643 843 aa10.86□□□□□ -0.67
PRKDC-211ENST00000546304 PKD2Q13563 968 aa10.86□□□□□ -0.67
PRKDC-211ENST00000546304 EIF4G3O43432 1585 aaKnown RBP10.85□□□□□ -0.67
PRKDC-211ENST00000546304 PDAP1Q13442 181 aaKnown RBP10.84□□□□□ -0.67
PRKDC-211ENST00000546304 TRIM35Q9UPQ4 493 aa10.83□□□□□ -0.68
PRKDC-211ENST00000546304 RAD54L2Q9Y4B4 1467 aa10.82□□□□□ -0.68
PRKDC-211ENST00000546304 PSEN1P49768 467 aa10.82□□□□□ -0.68
PRKDC-211ENST00000546304 IER5LQ5T953 404 aa10.82□□□□□ -0.68
PRKDC-211ENST00000546304 METRNQ9UJH8 293 aa10.82□□□□□ -0.68
PRKDC-211ENST00000546304 ABCA5Q8WWZ7 1642 aa10.81□□□□□ -0.68
PRKDC-211ENST00000546304 ABCA10Q8WWZ4 1543 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms