RNA–Protein interactions for RNA: ENST00000546296.5

LTBR-215, Transcript of lymphotoxin beta receptor, humanhuman

TSL 4

Gene LTBR, Length 783 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-215ENST00000546296 RIMBP3Q9UFD9 1639 aa27.92■■■□□ 2.06
LTBR-215ENST00000546296 JPH4Q96JJ6 628 aa27.9■■■□□ 2.06
LTBR-215ENST00000546296 PRXQ9BXM0 1461 aa27.89■■■□□ 2.05
LTBR-215ENST00000546296 KIAA0586Q9BVV6 1533 aa27.87■■■□□ 2.05
LTBR-215ENST00000546296 CYB5RLQ6IPT4 315 aa27.83■■■□□ 2.05
LTBR-215ENST00000546296 PRG4Q92954 1404 aaPredicted RBP27.79■■■□□ 2.04
LTBR-215ENST00000546296 SHROOM2Q13796 1616 aa27.77■■■□□ 2.04
LTBR-215ENST00000546296 ARAP1Q96P48 1450 aa27.75■■■□□ 2.03
LTBR-215ENST00000546296 ERCC6L2Q5T890 1561 aa27.72■■■□□ 2.03
LTBR-215ENST00000546296 IQGAP2Q13576 1575 aa27.71■■■□□ 2.03
LTBR-215ENST00000546296 EHMT2Q96KQ7 1210 aa27.69■■■□□ 2.02
LTBR-215ENST00000546296 CARMIL2Q6F5E8 1435 aa27.63■■■□□ 2.01
LTBR-215ENST00000546296 KIF21BO75037 1637 aa27.63■■■□□ 2.01
LTBR-215ENST00000546296 CTTNBP2Q8WZ74 1663 aa27.59■■■□□ 2.01
LTBR-215ENST00000546296 UBTFP17480 764 aaKnown RBP27.59■■■□□ 2.01
LTBR-215ENST00000546296 TTBK1Q5TCY1 1321 aaPredicted RBP27.58■■■□□ 2.01
LTBR-215ENST00000546296 UGGT2Q9NYU1 1516 aa27.56■■■□□ 2
LTBR-215ENST00000546296 GOLGA3Q08378 1498 aa27.54■■■□□ 2
LTBR-215ENST00000546296 RANGAP1P46060 587 aaPredicted RBP27.52■■■□□ 2
LTBR-215ENST00000546296 TNIKQ9UKE5 1360 aa27.51■■□□□ 1.99
LTBR-215ENST00000546296 DISP1Q96F81 1524 aa27.51■■□□□ 1.99
LTBR-215ENST00000546296 PTPRGP23470 1445 aa27.5■■□□□ 1.99
LTBR-215ENST00000546296 P3H3Q8IVL6 736 aa27.43■■□□□ 1.98
LTBR-215ENST00000546296 KIAA0556O60303 1618 aa27.42■■□□□ 1.98
LTBR-215ENST00000546296 NPM1P06748 294 aaKnown RBP eCLIP27.36■■□□□ 1.97
LTBR-215ENST00000546296 UACAQ9BZF9 1416 aa27.29■■□□□ 1.96
LTBR-215ENST00000546296 SAMD9Q5K651 1589 aa27.28■■□□□ 1.96
LTBR-215ENST00000546296 TRHP20396 242 aaPredicted RBP27.26■■□□□ 1.95
LTBR-215ENST00000546296 ADCY10Q96PN6 1610 aa27.25■■□□□ 1.95
LTBR-215ENST00000546296 EFCAB5A4FU69 1503 aa27.23■■□□□ 1.95
LTBR-215ENST00000546296 FHOD3Q2V2M9 1422 aa27.23■■□□□ 1.95
LTBR-215ENST00000546296 UHRF1BP1LA0JNW5 1464 aa27.21■■□□□ 1.95
LTBR-215ENST00000546296 LOC105371045A0A1W2PR82 267 aa27.21■■□□□ 1.95
LTBR-215ENST00000546296 PLB1Q6P1J6 1458 aa27.19■■□□□ 1.94
LTBR-215ENST00000546296 ABCC2Q92887 1545 aa27.18■■□□□ 1.94
LTBR-215ENST00000546296 ARHGAP35Q9NRY4 1499 aa27.13■■□□□ 1.93
LTBR-215ENST00000546296 ABCA8O94911 1581 aa27.12■■□□□ 1.93
LTBR-215ENST00000546296 CLIP1P30622 1438 aa27.08■■□□□ 1.93
LTBR-215ENST00000546296 ARID3CA6NKF2 412 aa27.08■■□□□ 1.93
LTBR-215ENST00000546296 KDM5BQ9UGL1 1544 aa27.07■■□□□ 1.92
LTBR-215ENST00000546296 MAPKBP1O60336 1514 aa27.06■■□□□ 1.92
LTBR-215ENST00000546296 FMN1Q68DA7 1419 aa27.04■■□□□ 1.92
LTBR-215ENST00000546296 ATP1B4Q9UN42 357 aaPredicted RBP27.03■■□□□ 1.92
LTBR-215ENST00000546296 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.02■■□□□ 1.92
LTBR-215ENST00000546296 HNRNPUL2Q1KMD3 747 aaKnown RBP27.02■■□□□ 1.92
LTBR-215ENST00000546296 RAPGEF6Q8TEU7 1601 aa27.01■■□□□ 1.92
LTBR-215ENST00000546296 ASXL2Q76L83 1435 aa27.01■■□□□ 1.91
LTBR-215ENST00000546296 FAM69CQ0P6D2 419 aa27■■□□□ 1.91
LTBR-215ENST00000546296 ZCCHC11Q5TAX3 1644 aaKnown RBP27■■□□□ 1.91
LTBR-215ENST00000546296 CEP162Q5TB80 1403 aa26.99■■□□□ 1.91
LTBR-215ENST00000546296 ATP10BO94823 1461 aa26.96■■□□□ 1.91
LTBR-215ENST00000546296 NUP153P49790 1475 aaKnown RBP26.94■■□□□ 1.9
LTBR-215ENST00000546296 ABCC10Q5T3U5 1492 aa26.94■■□□□ 1.9
LTBR-215ENST00000546296 KCNH8Q96L42 1107 aa26.9■■□□□ 1.9
LTBR-215ENST00000546296 WDR7Q9Y4E6 1490 aa26.87■■□□□ 1.89
LTBR-215ENST00000546296 DIP2BQ9P265 1576 aa26.86■■□□□ 1.89
LTBR-215ENST00000546296 PLEKHD1A6NEE1 506 aa26.84■■□□□ 1.89
LTBR-215ENST00000546296 EPRSP07814 1512 aaKnown RBP26.83■■□□□ 1.89
LTBR-215ENST00000546296 HECW1Q76N89 1606 aa26.83■■□□□ 1.88
LTBR-215ENST00000546296 CASKIN1Q8WXD9 1431 aa26.82■■□□□ 1.88
LTBR-215ENST00000546296 KIF13AQ9H1H9 1805 aa26.81■■□□□ 1.88
LTBR-215ENST00000546296 CDK11AQ9UQ88 783 aaPredicted RBP26.78■■□□□ 1.88
LTBR-215ENST00000546296 CDK13Q14004 1512 aaKnown RBP26.78■■□□□ 1.88
LTBR-215ENST00000546296 PCF11O94913 1555 aaKnown RBP26.76■■□□□ 1.87
LTBR-215ENST00000546296 GLI2P10070 1586 aa26.76■■□□□ 1.87
LTBR-215ENST00000546296 FYCO1Q9BQS8 1478 aa26.74■■□□□ 1.87
LTBR-215ENST00000546296 CCDC18Q5T9S5 1454 aa26.68■■□□□ 1.86
LTBR-215ENST00000546296 CD109Q6YHK3 1445 aa26.66■■□□□ 1.86
LTBR-215ENST00000546296 TSPOAP1O95153 1857 aa26.64■■□□□ 1.86
LTBR-215ENST00000546296 VPS8Q8N3P4 1428 aa26.64■■□□□ 1.85
LTBR-215ENST00000546296 MAP3K4Q9Y6R4 1608 aa26.61■■□□□ 1.85
LTBR-215ENST00000546296 LRRIQ1Q96JM4 1722 aa26.6■■□□□ 1.85
LTBR-215ENST00000546296 TROQ12816 1431 aaPredicted RBP26.59■■□□□ 1.85
LTBR-215ENST00000546296 CFAP43Q8NDM7 1665 aa26.57■■□□□ 1.84
LTBR-215ENST00000546296 TEX14Q8IWB6 1497 aa26.57■■□□□ 1.84
LTBR-215ENST00000546296 ABCA9Q8IUA7 1624 aa26.55■■□□□ 1.84
LTBR-215ENST00000546296 MAGI3Q5TCQ9 1506 aa26.54■■□□□ 1.84
LTBR-215ENST00000546296 PPRC1Q5VV67 1664 aaKnown RBP26.51■■□□□ 1.83
LTBR-215ENST00000546296 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.51■■□□□ 1.831e-6■■■■■ 27.4
LTBR-215ENST00000546296 MTUS2Q5JR59 1369 aa26.5■■□□□ 1.83
LTBR-215ENST00000546296 APLP2Q06481 763 aa26.49■■□□□ 1.83
LTBR-215ENST00000546296 KIF14Q15058 1648 aa26.48■■□□□ 1.83
LTBR-215ENST00000546296 TTC37Q6PGP7 1564 aa26.45■■□□□ 1.82
LTBR-215ENST00000546296 KDM6BO15054 1643 aa26.43■■□□□ 1.82
LTBR-215ENST00000546296 PLCH2O75038 1416 aa26.4■■□□□ 1.82
LTBR-215ENST00000546296 PHLDB1Q86UU1 1377 aa26.4■■□□□ 1.82
LTBR-215ENST00000546296 TIAM1Q13009 1591 aa26.39■■□□□ 1.82
LTBR-215ENST00000546296 NEO1Q92859 1461 aa26.38■■□□□ 1.81
LTBR-215ENST00000546296 EFCAB2Q5VUJ9 269 aa26.38■■□□□ 1.81
LTBR-215ENST00000546296 FANCAO15360 1455 aa26.37■■□□□ 1.81
LTBR-215ENST00000546296 EHBP1L1Q8N3D4 1523 aa26.36■■□□□ 1.81
LTBR-215ENST00000546296 COL17A1Q9UMD9 1497 aaPredicted RBP26.36■■□□□ 1.81
LTBR-215ENST00000546296 MAP3K1Q13233 1512 aa26.34■■□□□ 1.81
LTBR-215ENST00000546296 AKNAQ7Z591 1439 aa26.33■■□□□ 1.81
LTBR-215ENST00000546296 KANK4Q5T7N3 995 aaPredicted RBP26.33■■□□□ 1.81
LTBR-215ENST00000546296 CCNB3Q8WWL7 1395 aa26.33■■□□□ 1.8
LTBR-215ENST00000546296 MYO5CQ9NQX4 1742 aa26.31■■□□□ 1.8
LTBR-215ENST00000546296 LRRC9Q6ZRR7 1453 aa26.31■■□□□ 1.8
LTBR-215ENST00000546296 ARHGAP5Q13017 1502 aa26.31■■□□□ 1.8
LTBR-215ENST00000546296 ARAP3Q8WWN8 1544 aa26.3■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms