RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 GRIN2AQ12879 1464 aa8.37□□□□□ -1.07
USP28-213ENST00000544967 ERICH6Q7L0X2 663 aa8.37□□□□□ -1.07
USP28-213ENST00000544967 PRXQ9BXM0 1461 aa8.36□□□□□ -1.07
USP28-213ENST00000544967 KIF27Q86VH2 1401 aa8.36□□□□□ -1.07
USP28-213ENST00000544967 IGF1RP08069 1367 aa8.33□□□□□ -1.08
USP28-213ENST00000544967 AEBP2Q6ZN18 517 aaPredicted RBP8.3□□□□□ -1.08
USP28-213ENST00000544967 SAMD9Q5K651 1589 aa8.3□□□□□ -1.08
USP28-213ENST00000544967 UGGT2Q9NYU1 1516 aa8.3□□□□□ -1.08
USP28-213ENST00000544967 TDRD9Q8NDG6 1382 aaKnown RBP8.29□□□□□ -1.08
USP28-213ENST00000544967 RIMBP3CA6NJZ7 1639 aa8.28□□□□□ -1.08
USP28-213ENST00000544967 RIMBP3BA6NNM3 1639 aa8.28□□□□□ -1.08
USP28-213ENST00000544967 RIMBP3Q9UFD9 1639 aa8.28□□□□□ -1.08
USP28-213ENST00000544967 RAPGEF2Q9Y4G8 1499 aa8.27□□□□□ -1.09
USP28-213ENST00000544967 KIAA0586Q9BVV6 1533 aa8.27□□□□□ -1.09
USP28-213ENST00000544967 PCGF6Q9BYE7 350 aa8.27□□□□□ -1.09
USP28-213ENST00000544967 IQGAP2Q13576 1575 aa8.27□□□□□ -1.09
USP28-213ENST00000544967 KIAA0556O60303 1618 aa8.23□□□□□ -1.09
USP28-213ENST00000544967 ARHGEF11O15085 1522 aa8.23□□□□□ -1.09
USP28-213ENST00000544967 SCAF1Q9H7N4 1312 aaKnown RBP8.23□□□□□ -1.09
USP28-213ENST00000544967 TRIM26Q12899 539 aaPredicted RBP8.23□□□□□ -1.09
USP28-213ENST00000544967 PPARGC1BQ86YN6 1023 aaKnown RBP8.23□□□□□ -1.09
USP28-213ENST00000544967 EFCAB5A4FU69 1503 aa8.22□□□□□ -1.09
USP28-213ENST00000544967 CARMIL1Q5VZK9 1371 aa8.21□□□□□ -1.1
USP28-213ENST00000544967 DISP1Q96F81 1524 aa8.21□□□□□ -1.1
USP28-213ENST00000544967 AMER1Q5JTC6 1135 aaPredicted RBP8.2□□□□□ -1.1
USP28-213ENST00000544967 TIMELESSQ9UNS1 1208 aa8.2□□□□□ -1.1
USP28-213ENST00000544967 UHRF1BP1LA0JNW5 1464 aa8.18□□□□□ -1.1
USP28-213ENST00000544967 DNAJC5Q9H3Z4 198 aa8.18□□□□□ -1.1
USP28-213ENST00000544967 ERCC6L2Q5T890 1561 aa8.18□□□□□ -1.1
USP28-213ENST00000544967 ARAP1Q96P48 1450 aa8.18□□□□□ -1.1
USP28-213ENST00000544967 KCNA4P22459 653 aa8.17□□□□□ -1.1
USP28-213ENST00000544967 ABCA8O94911 1581 aa8.17□□□□□ -1.1
USP28-213ENST00000544967 ARXQ96QS3 562 aa8.16□□□□□ -1.1
USP28-213ENST00000544967 GOLGA3Q08378 1498 aa8.16□□□□□ -1.1
USP28-213ENST00000544967 ADCY10Q96PN6 1610 aa8.15□□□□□ -1.1
USP28-213ENST00000544967 OSCARQ8IYS5 282 aa8.15□□□□□ -1.1
USP28-213ENST00000544967 MAPKBP1O60336 1514 aa8.14□□□□□ -1.11
USP28-213ENST00000544967 TRIM41Q8WV44 630 aa8.14□□□□□ -1.11
USP28-213ENST00000544967 LRRIQ1Q96JM4 1722 aa8.12□□□□□ -1.11
USP28-213ENST00000544967 KDM5BQ9UGL1 1544 aa8.11□□□□□ -1.11
USP28-213ENST00000544967 ABCC2Q92887 1545 aa8.11□□□□□ -1.11
USP28-213ENST00000544967 ACIN1Q9UKV3 1341 aaKnown RBP8.11□□□□□ -1.11
USP28-213ENST00000544967 CSRNP3Q8WYN3 585 aa8.1□□□□□ -1.11
USP28-213ENST00000544967 GLI2P10070 1586 aa8.09□□□□□ -1.11
USP28-213ENST00000544967 RAPGEF6Q8TEU7 1601 aa8.09□□□□□ -1.11
USP28-213ENST00000544967 KIF13AQ9H1H9 1805 aa8.09□□□□□ -1.11
USP28-213ENST00000544967 CHMP7Q8WUX9 453 aaPredicted RBP8.09□□□□□ -1.11
USP28-213ENST00000544967 PRG4Q92954 1404 aaPredicted RBP8.09□□□□□ -1.12
USP28-213ENST00000544967 ZCCHC11Q5TAX3 1644 aaKnown RBP8.08□□□□□ -1.12
USP28-213ENST00000544967 TNIKQ9UKE5 1360 aa8.07□□□□□ -1.12
USP28-213ENST00000544967 CFAP43Q8NDM7 1665 aa8.07□□□□□ -1.12
USP28-213ENST00000544967 ARHGAP35Q9NRY4 1499 aa8.06□□□□□ -1.12
USP28-213ENST00000544967 CARMIL2Q6F5E8 1435 aa8.06□□□□□ -1.12
USP28-213ENST00000544967 MAP3K4Q9Y6R4 1608 aa8.05□□□□□ -1.12
USP28-213ENST00000544967 HECW1Q76N89 1606 aa8.04□□□□□ -1.12
USP28-213ENST00000544967 PPRC1Q5VV67 1664 aaKnown RBP8.04□□□□□ -1.12
USP28-213ENST00000544967 CENPBP07199 599 aaPredicted RBP8.04□□□□□ -1.12
USP28-213ENST00000544967 DIP2BQ9P265 1576 aa8.03□□□□□ -1.12
USP28-213ENST00000544967 MAP3K1Q13233 1512 aa8.03□□□□□ -1.12
USP28-213ENST00000544967 TULP1O00294 542 aaPredicted RBP8.02□□□□□ -1.12
USP28-213ENST00000544967 KLHL34Q8N239 644 aa8.02□□□□□ -1.13
USP28-213ENST00000544967 JPH4Q96JJ6 628 aa8.02□□□□□ -1.13
USP28-213ENST00000544967 ABCA9Q8IUA7 1624 aa8.01□□□□□ -1.13
USP28-213ENST00000544967 FYCO1Q9BQS8 1478 aa8.01□□□□□ -1.13
USP28-213ENST00000544967 EIF5BO60841 1220 aaKnown RBP8.01□□□□□ -1.13
USP28-213ENST00000544967 PCF11O94913 1555 aaKnown RBP8.01□□□□□ -1.13
USP28-213ENST00000544967 UACAQ9BZF9 1416 aa8.01□□□□□ -1.13
USP28-213ENST00000544967 NUP153P49790 1475 aaKnown RBP8□□□□□ -1.13
USP28-213ENST00000544967 ARAP3Q8WWN8 1544 aa8□□□□□ -1.13
USP28-213ENST00000544967 PHF23Q9BUL5 403 aaPredicted RBP7.99□□□□□ -1.13
USP28-213ENST00000544967 CASKIN1Q8WXD9 1431 aa7.98□□□□□ -1.13
USP28-213ENST00000544967 FMN1Q68DA7 1419 aa7.98□□□□□ -1.13
USP28-213ENST00000544967 CLSPNQ9HAW4 1339 aa7.98□□□□□ -1.13
USP28-213ENST00000544967 CCDC18Q5T9S5 1454 aa7.97□□□□□ -1.13
USP28-213ENST00000544967 ABCC10Q5T3U5 1492 aa7.96□□□□□ -1.13
USP28-213ENST00000544967 PTPRGP23470 1445 aa7.96□□□□□ -1.14
USP28-213ENST00000544967 PLB1Q6P1J6 1458 aa7.95□□□□□ -1.14
USP28-213ENST00000544967 RANGAP1P46060 587 aaPredicted RBP7.95□□□□□ -1.14
USP28-213ENST00000544967 CFAP74Q9C0B2 1584 aa7.95□□□□□ -1.14
USP28-213ENST00000544967 TAOK2Q9UL54 1235 aa7.94□□□□□ -1.14
USP28-213ENST00000544967 CEP162Q5TB80 1403 aa7.94□□□□□ -1.14
USP28-213ENST00000544967 ATP10BO94823 1461 aa7.94□□□□□ -1.14
USP28-213ENST00000544967 NEUROD1Q13562 356 aa7.94□□□□□ -1.14
USP28-213ENST00000544967 EPRSP07814 1512 aaKnown RBP7.94□□□□□ -1.14
USP28-213ENST00000544967 WDR7Q9Y4E6 1490 aa7.94□□□□□ -1.14
USP28-213ENST00000544967 PREX2Q70Z35 1606 aa7.93□□□□□ -1.14
USP28-213ENST00000544967 MAGI3Q5TCQ9 1506 aa7.92□□□□□ -1.14
USP28-213ENST00000544967 CLIP1P30622 1438 aa7.92□□□□□ -1.14
USP28-213ENST00000544967 FHOD3Q2V2M9 1422 aa7.92□□□□□ -1.14
USP28-213ENST00000544967 MYO5CQ9NQX4 1742 aa7.92□□□□□ -1.14
USP28-213ENST00000544967 TIAM1Q13009 1591 aa7.92□□□□□ -1.14
USP28-213ENST00000544967 FBLN2P98095 1184 aa7.92□□□□□ -1.14
USP28-213ENST00000544967 CDC42BPAQ5VT25 1732 aa7.91□□□□□ -1.14
USP28-213ENST00000544967 GTF3C3Q9Y5Q9 886 aa7.9□□□□□ -1.14
USP28-213ENST00000544967 EHBP1L1Q8N3D4 1523 aa7.9□□□□□ -1.14
USP28-213ENST00000544967 VPS8Q8N3P4 1428 aa7.9□□□□□ -1.15
USP28-213ENST00000544967 ITSN2Q9NZM3 1697 aa7.9□□□□□ -1.15
USP28-213ENST00000544967 CDC42BPBQ9Y5S2 1711 aa7.9□□□□□ -1.15
USP28-213ENST00000544967 KIF14Q15058 1648 aa7.9□□□□□ -1.15
USP28-213ENST00000544967 TTC37Q6PGP7 1564 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms