RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 CTTNBP2Q8WZ74 1663 aa26.77■■□□□ 1.88
VIM-209ENST00000544301 EFCAB5A4FU69 1503 aa26.77■■□□□ 1.88
VIM-209ENST00000544301 LRRC9Q6ZRR7 1453 aa26.77■■□□□ 1.88
VIM-209ENST00000544301 DHX57Q6P158 1386 aaKnown RBP26.76■■□□□ 1.87
VIM-209ENST00000544301 KIF21AQ7Z4S6 1674 aa26.76■■□□□ 1.87
VIM-209ENST00000544301 P3H3Q8IVL6 736 aa26.75■■□□□ 1.87
VIM-209ENST00000544301 PCF11O94913 1555 aaKnown RBP26.75■■□□□ 1.87
VIM-209ENST00000544301 CLSPNQ9HAW4 1339 aa26.75■■□□□ 1.87
VIM-209ENST00000544301 TDRD9Q8NDG6 1382 aaKnown RBP26.73■■□□□ 1.87
VIM-209ENST00000544301 FHOD3Q2V2M9 1422 aa26.72■■□□□ 1.87
VIM-209ENST00000544301 CFAP43Q8NDM7 1665 aa26.72■■□□□ 1.87
VIM-209ENST00000544301 GAPVD1Q14C86 1478 aa26.71■■□□□ 1.87
VIM-209ENST00000544301 FYCO1Q9BQS8 1478 aa26.67■■□□□ 1.86
VIM-209ENST00000544301 AQRO60306 1485 aaKnown RBP eCLIP26.66■■□□□ 1.862e-7■■■■□ 24.2
VIM-209ENST00000544301 CASKIN1Q8WXD9 1431 aa26.64■■□□□ 1.86
VIM-209ENST00000544301 PHLDB1Q86UU1 1377 aa26.63■■□□□ 1.85
VIM-209ENST00000544301 TARBP1Q13395 1621 aaKnown RBP26.62■■□□□ 1.85
VIM-209ENST00000544301 ITGAEP38570 1179 aa26.6■■□□□ 1.85
VIM-209ENST00000544301 ATP1B4Q9UN42 357 aaPredicted RBP26.6■■□□□ 1.85
VIM-209ENST00000544301 FMN1Q68DA7 1419 aa26.57■■□□□ 1.84
VIM-209ENST00000544301 SAMD9Q5K651 1589 aa26.55■■□□□ 1.84
VIM-209ENST00000544301 SNAPC4Q5SXM2 1469 aa26.52■■□□□ 1.84
VIM-209ENST00000544301 RAB3GAP2Q9H2M9 1393 aa26.51■■□□□ 1.83
VIM-209ENST00000544301 SCAF1Q9H7N4 1312 aaKnown RBP26.48■■□□□ 1.83
VIM-209ENST00000544301 MRC2Q9UBG0 1479 aa26.47■■□□□ 1.83
VIM-209ENST00000544301 FAM50AQ14320 339 aaKnown RBP26.46■■□□□ 1.83
VIM-209ENST00000544301 SETD5Q9C0A6 1442 aa26.46■■□□□ 1.83
VIM-209ENST00000544301 PBRM1Q86U86 1689 aa26.45■■□□□ 1.83
VIM-209ENST00000544301 ACIN1Q9UKV3 1341 aaKnown RBP26.42■■□□□ 1.82
VIM-209ENST00000544301 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.4■■□□□ 1.82
VIM-209ENST00000544301 GRIN2BQ13224 1484 aa26.39■■□□□ 1.82
VIM-209ENST00000544301 LRRIQ1Q96JM4 1722 aa26.38■■□□□ 1.81
VIM-209ENST00000544301 NEUROD1Q13562 356 aa26.38■■□□□ 1.81
VIM-209ENST00000544301 MAPKBP1O60336 1514 aa26.37■■□□□ 1.81
VIM-209ENST00000544301 ADAMTS12P58397 1594 aa26.36■■□□□ 1.81
VIM-209ENST00000544301 THOC2Q8NI27 1593 aaKnown RBP26.35■■□□□ 1.81
VIM-209ENST00000544301 MTUS2Q5JR59 1369 aa26.34■■□□□ 1.81
VIM-209ENST00000544301 CENPBP07199 599 aaPredicted RBP26.34■■□□□ 1.81
VIM-209ENST00000544301 MIER1Q8N108 512 aa26.33■■□□□ 1.81
VIM-209ENST00000544301 FGD6Q6ZV73 1430 aa26.33■■□□□ 1.81
VIM-209ENST00000544301 IFT140Q96RY7 1462 aa26.29■■□□□ 1.8
VIM-209ENST00000544301 IQGAP2Q13576 1575 aa26.29■■□□□ 1.8
VIM-209ENST00000544301 WDR62O43379 1518 aa26.28■■□□□ 1.8
VIM-209ENST00000544301 NCOA2Q15596 1464 aa26.24■■□□□ 1.79
VIM-209ENST00000544301 ZNF608Q9ULD9 1512 aaPredicted RBP26.24■■□□□ 1.79
VIM-209ENST00000544301 EHBP1L1Q8N3D4 1523 aa26.24■■□□□ 1.79
VIM-209ENST00000544301 SUPT6HQ7KZ85 1726 aaKnown RBP26.22■■□□□ 1.79
VIM-209ENST00000544301 CCDC18Q5T9S5 1454 aa26.21■■□□□ 1.79
VIM-209ENST00000544301 MYOM3Q5VTT5 1437 aa26.2■■□□□ 1.79
VIM-209ENST00000544301 HECW1Q76N89 1606 aa26.17■■□□□ 1.78
VIM-209ENST00000544301 MAGI3Q5TCQ9 1506 aa26.17■■□□□ 1.78
VIM-209ENST00000544301 ARHGEF11O15085 1522 aa26.16■■□□□ 1.78
VIM-209ENST00000544301 UGGT2Q9NYU1 1516 aa26.16■■□□□ 1.78
VIM-209ENST00000544301 PTPRKQ15262 1439 aa26.14■■□□□ 1.78
VIM-209ENST00000544301 YTHDC1Q96MU7 727 aaKnown RBP26.11■■□□□ 1.77
VIM-209ENST00000544301 SIN3AQ96ST3 1273 aa26.11■■□□□ 1.77
VIM-209ENST00000544301 EPRSP07814 1512 aaKnown RBP26.11■■□□□ 1.77
VIM-209ENST00000544301 HFM1A2PYH4 1435 aa26.1■■□□□ 1.77
VIM-209ENST00000544301 EIF4G3O43432 1585 aaKnown RBP26.09■■□□□ 1.77
VIM-209ENST00000544301 PTPN23Q9H3S7 1636 aa26.09■■□□□ 1.77
VIM-209ENST00000544301 KIAA0586Q9BVV6 1533 aa26.08■■□□□ 1.77
VIM-209ENST00000544301 ERCC6Q03468 1493 aa26.06■■□□□ 1.76
VIM-209ENST00000544301 TIMELESSQ9UNS1 1208 aa26.05■■□□□ 1.76
VIM-209ENST00000544301 GTF3C3Q9Y5Q9 886 aa26.05■■□□□ 1.76
VIM-209ENST00000544301 CDK13Q14004 1512 aaKnown RBP26.04■■□□□ 1.76
VIM-209ENST00000544301 GRIN2AQ12879 1464 aa26.04■■□□□ 1.76
VIM-209ENST00000544301 NAIPQ13075 1403 aa26.02■■□□□ 1.76
VIM-209ENST00000544301 TCOF1Q13428 1488 aaKnown RBP26.02■■□□□ 1.76
VIM-209ENST00000544301 DISP1Q96F81 1524 aa26.02■■□□□ 1.76
VIM-209ENST00000544301 KIAA0556O60303 1618 aa26.01■■□□□ 1.76
VIM-209ENST00000544301 UACAQ9BZF9 1416 aa25.99■■□□□ 1.75
VIM-209ENST00000544301 MAGI1Q96QZ7 1491 aaPredicted RBP25.95■■□□□ 1.75
VIM-209ENST00000544301 MIA2Q96PC5 1412 aa25.93■■□□□ 1.74
VIM-209ENST00000544301 ARID3CA6NKF2 412 aa25.93■■□□□ 1.74
VIM-209ENST00000544301 PPP1R15AO75807 674 aaPredicted RBP25.9■■□□□ 1.74
VIM-209ENST00000544301 SYNJ2O15056 1496 aa25.89■■□□□ 1.74
VIM-209ENST00000544301 NUP153P49790 1475 aaKnown RBP25.89■■□□□ 1.73
VIM-209ENST00000544301 RAPGEF6Q8TEU7 1601 aa25.88■■□□□ 1.73
VIM-209ENST00000544301 CEP170Q5SW79 1584 aa25.87■■□□□ 1.73
VIM-209ENST00000544301 GCC2Q8IWJ2 1684 aa25.87■■□□□ 1.73
VIM-209ENST00000544301 CHMP7Q8WUX9 453 aaPredicted RBP25.87■■□□□ 1.73
VIM-209ENST00000544301 AKNAQ7Z591 1439 aa25.86■■□□□ 1.73
VIM-209ENST00000544301 RRP7BPQ9NSQ0 103 aa25.85■■□□□ 1.73
VIM-209ENST00000544301 CHIC2Q9UKJ5 165 aa25.84■■□□□ 1.73
VIM-209ENST00000544301 TONSLQ96HA7 1378 aa25.82■■□□□ 1.72
VIM-209ENST00000544301 NUP160Q12769 1436 aa25.77■■□□□ 1.72
VIM-209ENST00000544301 KDM6BO15054 1643 aa25.77■■□□□ 1.72
VIM-209ENST00000544301 CDK11AQ9UQ88 783 aaPredicted RBP25.76■■□□□ 1.71
VIM-209ENST00000544301 FBLN2P98095 1184 aa25.76■■□□□ 1.71
VIM-209ENST00000544301 DAPK1P53355 1430 aa25.72■■□□□ 1.71
VIM-209ENST00000544301 DENND4BO75064 1496 aaPredicted RBP25.72■■□□□ 1.71
VIM-209ENST00000544301 PLB1Q6P1J6 1458 aa25.71■■□□□ 1.71
VIM-209ENST00000544301 CARMIL2Q6F5E8 1435 aa25.71■■□□□ 1.71
VIM-209ENST00000544301 JPH4Q96JJ6 628 aa25.7■■□□□ 1.71
VIM-209ENST00000544301 DNMT1P26358 1616 aaKnown RBP25.7■■□□□ 1.7
VIM-209ENST00000544301 TROQ12816 1431 aaPredicted RBP25.7■■□□□ 1.7
VIM-209ENST00000544301 ROCK1Q13464 1354 aa25.69■■□□□ 1.7
VIM-209ENST00000544301 TRIM52Q96A61 297 aa25.69■■□□□ 1.7
VIM-209ENST00000544301 ABCC5O15440 1437 aa25.69■■□□□ 1.7
VIM-209ENST00000544301 PRG4Q92954 1404 aaPredicted RBP25.69■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms