RNA–Protein interactions for RNA: ENST00000543082.5

TCF4-208, Transcript of transcription factor 4, humanhuman

TSL 1 (best) BASIC

Gene TCF4, Length 2,399 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-208ENST00000543082 MYT1LQ9UL68 1186 aa13.73□□□□□ -0.21
TCF4-208ENST00000543082 KANK4Q5T7N3 995 aaPredicted RBP13.71□□□□□ -0.21
TCF4-208ENST00000543082 WDR97A6NE52 1622 aa13.71□□□□□ -0.22
TCF4-208ENST00000543082 RANGAP1P46060 587 aaPredicted RBP13.69□□□□□ -0.22
TCF4-208ENST00000543082 ERICH6Q7L0X2 663 aa13.69□□□□□ -0.22
TCF4-208ENST00000543082 RAB3GAP2Q9H2M9 1393 aa13.69□□□□□ -0.22
TCF4-208ENST00000543082 DDX10Q13206 875 aaKnown RBP13.68□□□□□ -0.22
TCF4-208ENST00000543082 PPP1R15AO75807 674 aaPredicted RBP13.68□□□□□ -0.22
TCF4-208ENST00000543082 ITGAEP38570 1179 aa13.67□□□□□ -0.22
TCF4-208ENST00000543082 ATAD2BQ9ULI0 1458 aa13.67□□□□□ -0.22
TCF4-208ENST00000543082 ANP32CO43423 234 aa13.64□□□□□ -0.23
TCF4-208ENST00000543082 TIMELESSQ9UNS1 1208 aa13.64□□□□□ -0.23
TCF4-208ENST00000543082 CDK11AQ9UQ88 783 aaPredicted RBP13.64□□□□□ -0.23
TCF4-208ENST00000543082 SETD5Q9C0A6 1442 aa13.63□□□□□ -0.23
TCF4-208ENST00000543082 TRIM52Q96A61 297 aa13.63□□□□□ -0.23
TCF4-208ENST00000543082 MAP3K1Q13233 1512 aa13.61□□□□□ -0.23
TCF4-208ENST00000543082 TIAM1Q13009 1591 aa13.59□□□□□ -0.23
TCF4-208ENST00000543082 ARHGAP35Q9NRY4 1499 aa13.57□□□□□ -0.24
TCF4-208ENST00000543082 ERICH6BQ5W0A0 696 aa13.57□□□□□ -0.24
TCF4-208ENST00000543082 PRKCSHP14314 528 aaPredicted RBP13.56□□□□□ -0.24
TCF4-208ENST00000543082 KIF27Q86VH2 1401 aa13.54□□□□□ -0.24
TCF4-208ENST00000543082 DEKP35659 375 aaKnown RBP13.52□□□□□ -0.24
TCF4-208ENST00000543082 SIN3AQ96ST3 1273 aa13.52□□□□□ -0.25
TCF4-208ENST00000543082 CFAP43Q8NDM7 1665 aa13.51□□□□□ -0.25
TCF4-208ENST00000543082 CUX1P39880 1505 aa13.51□□□□□ -0.25
TCF4-208ENST00000543082 PABPN1Q86U42 306 aaKnown RBP eCLIP13.5□□□□□ -0.25
TCF4-208ENST00000543082 LRRC9Q6ZRR7 1453 aa13.49□□□□□ -0.25
TCF4-208ENST00000543082 PPP4R2Q9NY27 417 aa13.49□□□□□ -0.25
TCF4-208ENST00000543082 HNRNPUQ00839 825 aaKnown RBP eCLIP13.47□□□□□ -0.25
TCF4-208ENST00000543082 PHLDB1Q86UU1 1377 aa13.45□□□□□ -0.26
TCF4-208ENST00000543082 HIRIP3Q9BW71 556 aaPredicted RBP13.44□□□□□ -0.26
TCF4-208ENST00000543082 IRX6P78412 446 aaPredicted RBP13.43□□□□□ -0.26
TCF4-208ENST00000543082 TONSLQ96HA7 1378 aa13.43□□□□□ -0.26
TCF4-208ENST00000543082 HMGXB3Q12766 1538 aa13.43□□□□□ -0.26
TCF4-208ENST00000543082 FHAD1B1AJZ9 1412 aa13.42□□□□□ -0.26
TCF4-208ENST00000543082 NOP58Q9Y2X3 529 aaKnown RBP13.42□□□□□ -0.26
TCF4-208ENST00000543082 PRDM2Q13029 1718 aa13.41□□□□□ -0.26
TCF4-208ENST00000543082 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.41□□□□□ -0.26
TCF4-208ENST00000543082 FAM50AQ14320 339 aaKnown RBP13.4□□□□□ -0.26
TCF4-208ENST00000543082 PCF11O94913 1555 aaKnown RBP13.38□□□□□ -0.27
TCF4-208ENST00000543082 CFTRP13569 1480 aa13.36□□□□□ -0.27
TCF4-208ENST00000543082 NCAPD3P42695 1498 aa13.36□□□□□ -0.27
TCF4-208ENST00000543082 NCOA2Q15596 1464 aa13.35□□□□□ -0.27
TCF4-208ENST00000543082 CCDC18Q5T9S5 1454 aa13.35□□□□□ -0.27
TCF4-208ENST00000543082 IGF1RP08069 1367 aa13.34□□□□□ -0.27
TCF4-208ENST00000543082 UACAQ9BZF9 1416 aa13.33□□□□□ -0.27
TCF4-208ENST00000543082 KDM5BQ9UGL1 1544 aa13.33□□□□□ -0.28
TCF4-208ENST00000543082 PTPN23Q9H3S7 1636 aa13.32□□□□□ -0.28
TCF4-208ENST00000543082 CNTLNQ9NXG0 1405 aa13.31□□□□□ -0.28
TCF4-208ENST00000543082 NBR1Q14596 966 aa13.31□□□□□ -0.28
TCF4-208ENST00000543082 B4GALNT3Q6L9W6 998 aa13.31□□□□□ -0.28
TCF4-208ENST00000543082 ZBED9Q6R2W3 1325 aa13.31□□□□□ -0.28
TCF4-208ENST00000543082 FYCO1Q9BQS8 1478 aa13.3□□□□□ -0.28
TCF4-208ENST00000543082 RTL5Q5HYW3 569 aaPredicted RBP13.3□□□□□ -0.28
TCF4-208ENST00000543082 HFM1A2PYH4 1435 aa13.29□□□□□ -0.28
TCF4-208ENST00000543082 PAK3O75914 559 aaPredicted RBP13.29□□□□□ -0.28
TCF4-208ENST00000543082 ANP32AP39687 249 aaKnown RBP13.28□□□□□ -0.28
TCF4-208ENST00000543082 CARMIL1Q5VZK9 1371 aa13.28□□□□□ -0.28
TCF4-208ENST00000543082 AQRO60306 1485 aaKnown RBP eCLIP13.28□□□□□ -0.28
TCF4-208ENST00000543082 WASHC2AQ641Q2 1341 aa13.27□□□□□ -0.28
TCF4-208ENST00000543082 FGD6Q6ZV73 1430 aa13.27□□□□□ -0.29
TCF4-208ENST00000543082 IPO9Q96P70 1041 aaKnown RBP13.27□□□□□ -0.29
TCF4-208ENST00000543082 EFCAB5A4FU69 1503 aa13.26□□□□□ -0.29
TCF4-208ENST00000543082 POLR1AO95602 1720 aaPredicted RBP13.26□□□□□ -0.29
TCF4-208ENST00000543082 ANO8Q9HCE9 1232 aaPredicted RBP13.25□□□□□ -0.29
TCF4-208ENST00000543082 FGD5Q6ZNL6 1462 aa13.25□□□□□ -0.29
TCF4-208ENST00000543082 CASKIN1Q8WXD9 1431 aa13.24□□□□□ -0.29
TCF4-208ENST00000543082 HSPA5P11021 654 aaKnown RBP13.23□□□□□ -0.29
TCF4-208ENST00000543082 HECW1Q76N89 1606 aa13.23□□□□□ -0.29
TCF4-208ENST00000543082 ZBTB47Q9UFB7 747 aaPredicted RBP13.22□□□□□ -0.29
TCF4-208ENST00000543082 ABCA5Q8WWZ7 1642 aa13.22□□□□□ -0.29
TCF4-208ENST00000543082 SMG6Q86US8 1419 aaKnown RBP13.21□□□□□ -0.29
TCF4-208ENST00000543082 PRKRIP1Q9H875 184 aaPredicted RBP13.21□□□□□ -0.3
TCF4-208ENST00000543082 NAIPQ13075 1403 aa13.2□□□□□ -0.3
TCF4-208ENST00000543082 EIF4G2P78344 907 aaKnown RBP eCLIP13.2□□□□□ -0.33e-7■■■■■ 40.1
TCF4-208ENST00000543082 CCDC184Q52MB2 194 aa13.2□□□□□ -0.3
TCF4-208ENST00000543082 MRS2Q9HD23 443 aa13.2□□□□□ -0.3
TCF4-208ENST00000543082 NCOA1Q15788 1441 aa13.2□□□□□ -0.3
TCF4-208ENST00000543082 FMN1Q68DA7 1419 aa13.2□□□□□ -0.3
TCF4-208ENST00000543082 GCC2Q8IWJ2 1684 aa13.2□□□□□ -0.3
TCF4-208ENST00000543082 FAM9BQ8IZU0 186 aa13.2□□□□□ -0.3
TCF4-208ENST00000543082 CTTNBP2Q8WZ74 1663 aa13.19□□□□□ -0.3
TCF4-208ENST00000543082 CCDC7Q96M83 1385 aa13.18□□□□□ -0.3
TCF4-208ENST00000543082 SALL2Q9Y467 1007 aaPredicted RBP13.18□□□□□ -0.3
TCF4-208ENST00000543082 PTPRKQ15262 1439 aa13.18□□□□□ -0.3
TCF4-208ENST00000543082 RNF123Q5XPI4 1314 aa13.17□□□□□ -0.3
TCF4-208ENST00000543082 FHOD3Q2V2M9 1422 aa13.17□□□□□ -0.3
TCF4-208ENST00000543082 CCDC136Q96JN2 1154 aa13.16□□□□□ -0.3
TCF4-208ENST00000543082 CC2D2AQ9P2K1 1620 aa13.15□□□□□ -0.3
TCF4-208ENST00000543082 ATP1B4Q9UN42 357 aaPredicted RBP13.15□□□□□ -0.3
TCF4-208ENST00000543082 AKNAQ7Z591 1439 aa13.15□□□□□ -0.3
TCF4-208ENST00000543082 CUL7Q14999 1698 aa13.14□□□□□ -0.31
TCF4-208ENST00000543082 SUPT6HQ7KZ85 1726 aaKnown RBP13.14□□□□□ -0.31
TCF4-208ENST00000543082 USP35Q9P2H5 1018 aa13.14□□□□□ -0.31
TCF4-208ENST00000543082 SNAPC4Q5SXM2 1469 aa13.14□□□□□ -0.31
TCF4-208ENST00000543082 IL27Q8NEV9 243 aa13.13□□□□□ -0.31
TCF4-208ENST00000543082 NUDCQ9Y266 331 aa13.13□□□□□ -0.31
TCF4-208ENST00000543082 MYOM3Q5VTT5 1437 aa13.13□□□□□ -0.31
TCF4-208ENST00000543082 THOC2Q8NI27 1593 aaKnown RBP13.12□□□□□ -0.31
TCF4-208ENST00000543082 MTUS2Q5JR59 1369 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms