RNA–Protein interactions for RNA: ENST00000542700.6

CHMP4A-209, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 3

Gene CHMP4A, Length 847 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-209ENST00000542700 GRIN2AQ12879 1464 aa15.03■□□□□ -0
CHMP4A-209ENST00000542700 NPM1P06748 294 aaKnown RBP eCLIP15.03■□□□□ -0
CHMP4A-209ENST00000542700 DISP3Q9P2K9 1392 aa15.02■□□□□ -0
CHMP4A-209ENST00000542700 NUP160Q12769 1436 aa15□□□□□ -0.01
CHMP4A-209ENST00000542700 PRG4Q92954 1404 aaPredicted RBP14.96□□□□□ -0.01
CHMP4A-209ENST00000542700 ADCY10Q96PN6 1610 aa14.93□□□□□ -0.02
CHMP4A-209ENST00000542700 CUX1P39880 1505 aa14.92□□□□□ -0.02
CHMP4A-209ENST00000542700 ABCA5Q8WWZ7 1642 aa14.92□□□□□ -0.02
CHMP4A-209ENST00000542700 ADAMTS12P58397 1594 aa14.91□□□□□ -0.02
CHMP4A-209ENST00000542700 TOP2BQ02880 1626 aa14.85□□□□□ -0.03
CHMP4A-209ENST00000542700 PPRC1Q5VV67 1664 aaKnown RBP14.85□□□□□ -0.03
CHMP4A-209ENST00000542700 COL17A1Q9UMD9 1497 aaPredicted RBP14.85□□□□□ -0.03
CHMP4A-209ENST00000542700 ABCA10Q8WWZ4 1543 aa14.84□□□□□ -0.03
CHMP4A-209ENST00000542700 JPH4Q96JJ6 628 aa14.82□□□□□ -0.04
CHMP4A-209ENST00000542700 SPATA31D1Q6ZQQ2 1576 aa14.8□□□□□ -0.04
CHMP4A-209ENST00000542700 FHAD1B1AJZ9 1412 aa14.79□□□□□ -0.04
CHMP4A-209ENST00000542700 GLI2P10070 1586 aa14.73□□□□□ -0.05
CHMP4A-209ENST00000542700 RUSC2Q8N2Y8 1516 aa14.72□□□□□ -0.05
CHMP4A-209ENST00000542700 CERKQ8TCT0 537 aa14.71□□□□□ -0.05
CHMP4A-209ENST00000542700 ASXL2Q76L83 1435 aa14.71□□□□□ -0.05
CHMP4A-209ENST00000542700 PLB1Q6P1J6 1458 aa14.68□□□□□ -0.06
CHMP4A-209ENST00000542700 TEX14Q8IWB6 1497 aa14.68□□□□□ -0.06
CHMP4A-209ENST00000542700 PCF11O94913 1555 aaKnown RBP14.68□□□□□ -0.06
CHMP4A-209ENST00000542700 KIF21BO75037 1637 aa14.66□□□□□ -0.06
CHMP4A-209ENST00000542700 PTPRMP28827 1452 aa14.65□□□□□ -0.06
CHMP4A-209ENST00000542700 MAP3K4Q9Y6R4 1608 aa14.65□□□□□ -0.06
CHMP4A-209ENST00000542700 ABCC2Q92887 1545 aa14.64□□□□□ -0.07
CHMP4A-209ENST00000542700 TTBK1Q5TCY1 1321 aaPredicted RBP14.63□□□□□ -0.07
CHMP4A-209ENST00000542700 ERICH3Q5RHP9 1530 aa14.62□□□□□ -0.07
CHMP4A-209ENST00000542700 WRNQ14191 1432 aaPredicted RBP eCLIP14.6□□□□□ -0.07
CHMP4A-209ENST00000542700 EPRSP07814 1512 aaKnown RBP14.6□□□□□ -0.07
CHMP4A-209ENST00000542700 CUL7Q14999 1698 aa14.58□□□□□ -0.07
CHMP4A-209ENST00000542700 PTPRGP23470 1445 aa14.58□□□□□ -0.07
CHMP4A-209ENST00000542700 HSPA2P54652 639 aa14.56□□□□□ -0.08
CHMP4A-209ENST00000542700 ADAMTSL3P82987 1691 aa14.55□□□□□ -0.08
CHMP4A-209ENST00000542700 KIAA0586Q9BVV6 1533 aa14.52□□□□□ -0.08
CHMP4A-209ENST00000542700 MADDQ8WXG6 1647 aa14.47□□□□□ -0.09
CHMP4A-209ENST00000542700 TNIKQ9UKE5 1360 aa14.47□□□□□ -0.09
CHMP4A-209ENST00000542700 UHRF1BP1LA0JNW5 1464 aa14.46□□□□□ -0.09
CHMP4A-209ENST00000542700 UACAQ9BZF9 1416 aa14.43□□□□□ -0.1
CHMP4A-209ENST00000542700 KDM5BQ9UGL1 1544 aa14.42□□□□□ -0.1
CHMP4A-209ENST00000542700 MAGI3Q5TCQ9 1506 aa14.41□□□□□ -0.1
CHMP4A-209ENST00000542700 ZCCHC11Q5TAX3 1644 aaKnown RBP14.41□□□□□ -0.1
CHMP4A-209ENST00000542700 BCORL1Q5H9F3 1711 aa14.41□□□□□ -0.1
CHMP4A-209ENST00000542700 PLPPR3Q6T4P5 718 aa14.41□□□□□ -0.1
CHMP4A-209ENST00000542700 CD109Q6YHK3 1445 aa14.41□□□□□ -0.1
CHMP4A-209ENST00000542700 CARMIL2Q6F5E8 1435 aa14.4□□□□□ -0.1
CHMP4A-209ENST00000542700 RIMS1Q86UR5 1692 aaKnown RBP14.39□□□□□ -0.11
CHMP4A-209ENST00000542700 WDR7Q9Y4E6 1490 aa14.39□□□□□ -0.11
CHMP4A-209ENST00000542700 BIVM-ERCC5R4GMW8 1640 aa14.39□□□□□ -0.11
CHMP4A-209ENST00000542700 ARID4BQ4LE39 1312 aaPredicted RBP14.39□□□□□ -0.11
CHMP4A-209ENST00000542700 CFAP43Q8NDM7 1665 aa14.36□□□□□ -0.11
CHMP4A-209ENST00000542700 ARAP3Q8WWN8 1544 aa14.33□□□□□ -0.12
CHMP4A-209ENST00000542700 KCNH8Q96L42 1107 aa14.3□□□□□ -0.12
CHMP4A-209ENST00000542700 RAPGEF3O95398 923 aa14.26□□□□□ -0.13
CHMP4A-209ENST00000542700 DISP1Q96F81 1524 aa14.25□□□□□ -0.13
CHMP4A-209ENST00000542700 YEATS2Q9ULM3 1422 aa14.25□□□□□ -0.13
CHMP4A-209ENST00000542700 IQGAP2Q13576 1575 aa14.25□□□□□ -0.13
CHMP4A-209ENST00000542700 DMRT2Q9Y5R5 561 aa14.24□□□□□ -0.13
CHMP4A-209ENST00000542700 MED1Q15648 1581 aaPredicted RBP14.22□□□□□ -0.13
CHMP4A-209ENST00000542700 STRCQ7RTU9 1775 aa14.22□□□□□ -0.13
CHMP4A-209ENST00000542700 FRMPD1Q5SYB0 1578 aa14.2□□□□□ -0.14
CHMP4A-209ENST00000542700 IGF1RP08069 1367 aa14.2□□□□□ -0.14
CHMP4A-209ENST00000542700 IQSEC2Q5JU85 1478 aa14.19□□□□□ -0.14
CHMP4A-209ENST00000542700 ARHGEF40Q8TER5 1519 aa14.19□□□□□ -0.14
CHMP4A-209ENST00000542700 LTBP4Q8N2S1 1624 aa14.19□□□□□ -0.14
CHMP4A-209ENST00000542700 PREX1Q8TCU6 1659 aa14.17□□□□□ -0.14
CHMP4A-209ENST00000542700 POGZQ7Z3K3 1410 aa14.15□□□□□ -0.14
CHMP4A-209ENST00000542700 PHLDB1Q86UU1 1377 aa14.15□□□□□ -0.14
CHMP4A-209ENST00000542700 TTC37Q6PGP7 1564 aa14.14□□□□□ -0.15
CHMP4A-209ENST00000542700 UBAP1LF5GYI3 381 aa14.14□□□□□ -0.15
CHMP4A-209ENST00000542700 KIAA0556O60303 1618 aa14.14□□□□□ -0.15
CHMP4A-209ENST00000542700 PTPRTO14522 1441 aa14.14□□□□□ -0.15
CHMP4A-209ENST00000542700 FANCAO15360 1455 aa14.13□□□□□ -0.15
CHMP4A-209ENST00000542700 FER1L4A9Z1Z3 1794 aa14.13□□□□□ -0.15
CHMP4A-209ENST00000542700 MLECQ14165 292 aa14.12□□□□□ -0.15
CHMP4A-209ENST00000542700 PHF23Q9BUL5 403 aaPredicted RBP14.12□□□□□ -0.15
CHMP4A-209ENST00000542700 NEO1Q92859 1461 aa14.1□□□□□ -0.15
CHMP4A-209ENST00000542700 UGGT2Q9NYU1 1516 aa14.1□□□□□ -0.15
CHMP4A-209ENST00000542700 SIGLEC1Q9BZZ2 1709 aa14.1□□□□□ -0.15
CHMP4A-209ENST00000542700 CARMIL1Q5VZK9 1371 aa14.09□□□□□ -0.15
CHMP4A-209ENST00000542700 KIF27Q86VH2 1401 aa14.09□□□□□ -0.15
CHMP4A-209ENST00000542700 UHRF1BP1Q6BDS2 1440 aa14.08□□□□□ -0.15
CHMP4A-209ENST00000542700 CEBPAP49715 358 aaPredicted RBP14.07□□□□□ -0.16
CHMP4A-209ENST00000542700 ABCA9Q8IUA7 1624 aa14.07□□□□□ -0.16
CHMP4A-209ENST00000542700 AKNAQ7Z591 1439 aa14.07□□□□□ -0.16
CHMP4A-209ENST00000542700 ABCA8O94911 1581 aa14.05□□□□□ -0.16
CHMP4A-209ENST00000542700 ARID3CA6NKF2 412 aa14.04□□□□□ -0.16
CHMP4A-209ENST00000542700 HSPA1LP34931 641 aa14.04□□□□□ -0.16
CHMP4A-209ENST00000542700 SCAF1Q9H7N4 1312 aaKnown RBP14.03□□□□□ -0.16
CHMP4A-209ENST00000542700 RICTORQ6R327 1708 aa14.01□□□□□ -0.17
CHMP4A-209ENST00000542700 ZFYVE16Q7Z3T8 1539 aa14.01□□□□□ -0.17
CHMP4A-209ENST00000542700 DENND4BO75064 1496 aaPredicted RBP14.01□□□□□ -0.17
CHMP4A-209ENST00000542700 ARHGEF12Q9NZN5 1544 aa14□□□□□ -0.17
CHMP4A-209ENST00000542700 EFCAB5A4FU69 1503 aa13.99□□□□□ -0.17
CHMP4A-209ENST00000542700 ZNF335Q9H4Z2 1342 aaPredicted RBP13.98□□□□□ -0.17
CHMP4A-209ENST00000542700 FHOD3Q2V2M9 1422 aa13.98□□□□□ -0.17
CHMP4A-209ENST00000542700 PIP4K2BP78356 416 aa13.97□□□□□ -0.17
CHMP4A-209ENST00000542700 ZMYM4Q5VZL5 1548 aa13.96□□□□□ -0.17
CHMP4A-209ENST00000542700 NCOA1Q15788 1441 aa13.96□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms