RNA–Protein interactions for RNA: ENST00000542570.5

TOP3A-208, Transcript of DNA topoisomerase III alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOP3A, Length 4,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-208ENST00000542570 NCAPD3P42695 1498 aa14.4□□□□□ -0.1
TOP3A-208ENST00000542570 DDX10Q13206 875 aaKnown RBP14.39□□□□□ -0.11
TOP3A-208ENST00000542570 TSPY4P0CV99 314 aa14.38□□□□□ -0.11
TOP3A-208ENST00000542570 TSPY10P0CW01 314 aa14.38□□□□□ -0.11
TOP3A-208ENST00000542570 CFDP1Q9UEE9 299 aaPredicted RBP14.38□□□□□ -0.11
TOP3A-208ENST00000542570 FHOD3Q2V2M9 1422 aa14.35□□□□□ -0.11
TOP3A-208ENST00000542570 RGL3Q3MIN7 710 aa14.33□□□□□ -0.12
TOP3A-208ENST00000542570 IGF1RP08069 1367 aa14.32□□□□□ -0.12
TOP3A-208ENST00000542570 SENP3-EIF4A1A0A087X0R7 540 aa14.32□□□□□ -0.12
TOP3A-208ENST00000542570 FOXD1Q16676 465 aa14.32□□□□□ -0.12
TOP3A-208ENST00000542570 TONSLQ96HA7 1378 aa14.32□□□□□ -0.12
TOP3A-208ENST00000542570 CC2D2AQ9P2K1 1620 aa14.31□□□□□ -0.12
TOP3A-208ENST00000542570 FGD5Q6ZNL6 1462 aa14.3□□□□□ -0.12
TOP3A-208ENST00000542570 VPS8Q8N3P4 1428 aa14.3□□□□□ -0.12
TOP3A-208ENST00000542570 BCANQ96GW7 911 aa14.3□□□□□ -0.12
TOP3A-208ENST00000542570 AQRO60306 1485 aaKnown RBP eCLIP14.3□□□□□ -0.121e-6■■■■□ 26.1
TOP3A-208ENST00000542570 NEFLP07196 543 aa14.3□□□□□ -0.12
TOP3A-208ENST00000542570 PELP1Q8IZL8 1130 aaKnown RBP14.28□□□□□ -0.12
TOP3A-208ENST00000542570 JPH4Q96JJ6 628 aa14.28□□□□□ -0.12
TOP3A-208ENST00000542570 MIER1Q8N108 512 aa14.24□□□□□ -0.13
TOP3A-208ENST00000542570 SYNJ1O43426 1573 aa14.24□□□□□ -0.13
TOP3A-208ENST00000542570 CCNB3Q8WWL7 1395 aa14.24□□□□□ -0.13
TOP3A-208ENST00000542570 ANP32CO43423 234 aa14.24□□□□□ -0.13
TOP3A-208ENST00000542570 GTF3C3Q9Y5Q9 886 aa14.21□□□□□ -0.13
TOP3A-208ENST00000542570 CFTRP13569 1480 aa14.21□□□□□ -0.13
TOP3A-208ENST00000542570 UNC13AQ9UPW8 1703 aa14.2□□□□□ -0.14
TOP3A-208ENST00000542570 SALL2Q9Y467 1007 aaPredicted RBP14.19□□□□□ -0.14
TOP3A-208ENST00000542570 FHAD1B1AJZ9 1412 aa14.17□□□□□ -0.14
TOP3A-208ENST00000542570 STAG3Q9UJ98 1225 aa14.17□□□□□ -0.14
TOP3A-208ENST00000542570 ESF1Q9H501 851 aaKnown RBP14.15□□□□□ -0.14
TOP3A-208ENST00000542570 GAPVD1Q14C86 1478 aa14.14□□□□□ -0.15
TOP3A-208ENST00000542570 HNRNPMP52272 730 aaKnown RBP eCLIP14.14□□□□□ -0.15
TOP3A-208ENST00000542570 CUX1P39880 1505 aa14.13□□□□□ -0.15
TOP3A-208ENST00000542570 MLECQ14165 292 aa14.12□□□□□ -0.15
TOP3A-208ENST00000542570 FAM9BQ8IZU0 186 aa14.12□□□□□ -0.15
TOP3A-208ENST00000542570 CYB5RLQ6IPT4 315 aa14.11□□□□□ -0.15
TOP3A-208ENST00000542570 ZNF644Q9H582 1327 aaPredicted RBP14.11□□□□□ -0.15
TOP3A-208ENST00000542570 PLEKHG5O94827 1062 aa14.09□□□□□ -0.15
TOP3A-208ENST00000542570 TRHP20396 242 aaPredicted RBP14.08□□□□□ -0.16
TOP3A-208ENST00000542570 RAB3GAP2Q9H2M9 1393 aa14.07□□□□□ -0.16
TOP3A-208ENST00000542570 GGT6Q6P531 493 aa14.06□□□□□ -0.16
TOP3A-208ENST00000542570 ARID4BQ4LE39 1312 aaPredicted RBP14.06□□□□□ -0.16
TOP3A-208ENST00000542570 POLA1P09884 1462 aaPredicted RBP14.06□□□□□ -0.16
TOP3A-208ENST00000542570 FMN1Q68DA7 1419 aa14.04□□□□□ -0.16
TOP3A-208ENST00000542570 CARMIL2Q6F5E8 1435 aa14.04□□□□□ -0.16
TOP3A-208ENST00000542570 TOPBP1Q92547 1522 aa14.04□□□□□ -0.16
TOP3A-208ENST00000542570 ARAP1Q96P48 1450 aa14.03□□□□□ -0.16
TOP3A-208ENST00000542570 ARHGAP35Q9NRY4 1499 aa14.03□□□□□ -0.16
TOP3A-208ENST00000542570 PKD2Q13563 968 aa14.03□□□□□ -0.16
TOP3A-208ENST00000542570 BCL11AQ9H165 835 aa14.02□□□□□ -0.16
TOP3A-208ENST00000542570 HNRNPUQ00839 825 aaKnown RBP eCLIP14.02□□□□□ -0.17
TOP3A-208ENST00000542570 HMGXB3Q12766 1538 aa14.02□□□□□ -0.17
TOP3A-208ENST00000542570 ACIN1Q9UKV3 1341 aaKnown RBP14.02□□□□□ -0.17
TOP3A-208ENST00000542570 EIF4G2P78344 907 aaKnown RBP eCLIP14.01□□□□□ -0.17
TOP3A-208ENST00000542570 DCAF11Q8TEB1 546 aa14.01□□□□□ -0.17
TOP3A-208ENST00000542570 SETD5Q9C0A6 1442 aa13.99□□□□□ -0.17
TOP3A-208ENST00000542570 KIF21BO75037 1637 aa13.98□□□□□ -0.17
TOP3A-208ENST00000542570 MPHOSPH9Q99550 1183 aa13.98□□□□□ -0.17
TOP3A-208ENST00000542570 PTPRGP23470 1445 aa13.97□□□□□ -0.17
TOP3A-208ENST00000542570 PHLDB1Q86UU1 1377 aa13.97□□□□□ -0.17
TOP3A-208ENST00000542570 CARD11Q9BXL7 1154 aa13.96□□□□□ -0.17
TOP3A-208ENST00000542570 IRX6P78412 446 aaPredicted RBP13.95□□□□□ -0.18
TOP3A-208ENST00000542570 NUTM2DQ5VT03 806 aaPredicted RBP13.95□□□□□ -0.18
TOP3A-208ENST00000542570 OSCARQ8IYS5 282 aa13.95□□□□□ -0.18
TOP3A-208ENST00000542570 PRXQ9BXM0 1461 aa13.95□□□□□ -0.18
TOP3A-208ENST00000542570 SLC24A1O60721 1099 aa13.94□□□□□ -0.18
TOP3A-208ENST00000542570 MRS2Q9HD23 443 aa13.94□□□□□ -0.18
TOP3A-208ENST00000542570 SAFB2Q14151 953 aaKnown RBP eCLIP13.94□□□□□ -0.18
TOP3A-208ENST00000542570 TOP2BQ02880 1626 aa13.94□□□□□ -0.18
TOP3A-208ENST00000542570 TMC1Q8TDI8 760 aa13.93□□□□□ -0.18
TOP3A-208ENST00000542570 KIF3BO15066 747 aa13.92□□□□□ -0.18
TOP3A-208ENST00000542570 NUP155O75694 1391 aa13.92□□□□□ -0.18
TOP3A-208ENST00000542570 EFCAB2Q5VUJ9 269 aa13.92□□□□□ -0.18
TOP3A-208ENST00000542570 L3MBTL2Q969R5 705 aa13.91□□□□□ -0.18
TOP3A-208ENST00000542570 ZNF608Q9ULD9 1512 aaPredicted RBP13.9□□□□□ -0.19
TOP3A-208ENST00000542570 PPP1R15AO75807 674 aaPredicted RBP13.88□□□□□ -0.19
TOP3A-208ENST00000542570 FKBP8Q14318 412 aa13.88□□□□□ -0.19
TOP3A-208ENST00000542570 MRC2Q9UBG0 1479 aa13.88□□□□□ -0.19
TOP3A-208ENST00000542570 URB2Q14146 1524 aaKnown RBP13.88□□□□□ -0.19
TOP3A-208ENST00000542570 ERICH6Q7L0X2 663 aa13.88□□□□□ -0.19
TOP3A-208ENST00000542570 TNNT2P45379 298 aaPredicted RBP13.87□□□□□ -0.19
TOP3A-208ENST00000542570 GRIN2BQ13224 1484 aa13.87□□□□□ -0.19
TOP3A-208ENST00000542570 DHX57Q6P158 1386 aaKnown RBP13.86□□□□□ -0.19
TOP3A-208ENST00000542570 HSPA5P11021 654 aaKnown RBP13.86□□□□□ -0.19
TOP3A-208ENST00000542570 AFAP1Q8N556 730 aa13.85□□□□□ -0.19
TOP3A-208ENST00000542570 SCAF1Q9H7N4 1312 aaKnown RBP13.85□□□□□ -0.19
TOP3A-208ENST00000542570 PEG3Q9GZU2 1588 aa13.85□□□□□ -0.19
TOP3A-208ENST00000542570 SNAPC4Q5SXM2 1469 aa13.85□□□□□ -0.19
TOP3A-208ENST00000542570 STK26Q9P289 416 aa13.83□□□□□ -0.2
TOP3A-208ENST00000542570 SPAG9O60271 1321 aaKnown RBP13.82□□□□□ -0.2
TOP3A-208ENST00000542570 PRG4Q92954 1404 aaPredicted RBP13.81□□□□□ -0.2
TOP3A-208ENST00000542570 CC2D1BQ5T0F9 858 aaKnown RBP13.81□□□□□ -0.2
TOP3A-208ENST00000542570 CCDC18Q5T9S5 1454 aa13.79□□□□□ -0.2
TOP3A-208ENST00000542570 DNMBPQ6XZF7 1577 aa13.79□□□□□ -0.2
TOP3A-208ENST00000542570 LRRC9Q6ZRR7 1453 aa13.79□□□□□ -0.2
TOP3A-208ENST00000542570 PPM1GO15355 546 aaPredicted RBP13.79□□□□□ -0.2
TOP3A-208ENST00000542570 ANKRD30AQ9BXX3 1397 aa13.78□□□□□ -0.2
TOP3A-208ENST00000542570 CLSPNQ9HAW4 1339 aa13.77□□□□□ -0.2
TOP3A-208ENST00000542570 ZBTB7CA1YPR0 619 aa13.77□□□□□ -0.21
TOP3A-208ENST00000542570 PRDM2Q13029 1718 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms