RNA–Protein interactions for RNA: ENST00000542495.5

ATPAF1-212, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2 BASIC

Gene ATPAF1, Length 1,779 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-212ENST00000542495 TOP2BQ02880 1626 aa7.94□□□□□ -1.14
ATPAF1-212ENST00000542495 HMGXB3Q12766 1538 aa7.93□□□□□ -1.14
ATPAF1-212ENST00000542495 BIVM-ERCC5R4GMW8 1640 aa7.92□□□□□ -1.14
ATPAF1-212ENST00000542495 ATF5Q9Y2D1 282 aaPredicted RBP7.92□□□□□ -1.14
ATPAF1-212ENST00000542495 CHRDL2Q6WN34 429 aa7.92□□□□□ -1.14
ATPAF1-212ENST00000542495 ABCB7O75027 752 aa7.91□□□□□ -1.14
ATPAF1-212ENST00000542495 CLIP1P30622 1438 aa7.9□□□□□ -1.14
ATPAF1-212ENST00000542495 VPS8Q8N3P4 1428 aa7.9□□□□□ -1.14
ATPAF1-212ENST00000542495 RAPGEF2Q9Y4G8 1499 aa7.89□□□□□ -1.15
ATPAF1-212ENST00000542495 ERICH3Q5RHP9 1530 aa7.87□□□□□ -1.15
ATPAF1-212ENST00000542495 PRXQ9BXM0 1461 aa7.86□□□□□ -1.15
ATPAF1-212ENST00000542495 NESP48681 1621 aa7.86□□□□□ -1.15
ATPAF1-212ENST00000542495 TRHP20396 242 aaPredicted RBP7.84□□□□□ -1.15
ATPAF1-212ENST00000542495 TTBK1Q5TCY1 1321 aaPredicted RBP7.84□□□□□ -1.15
ATPAF1-212ENST00000542495 CUX1P39880 1505 aa7.84□□□□□ -1.15
ATPAF1-212ENST00000542495 LAMC3Q9Y6N6 1575 aa7.83□□□□□ -1.16
ATPAF1-212ENST00000542495 CFTRP13569 1480 aa7.83□□□□□ -1.16
ATPAF1-212ENST00000542495 DIEXFQ68CQ4 756 aaKnown RBP7.81□□□□□ -1.16
ATPAF1-212ENST00000542495 ARAP1Q96P48 1450 aa7.8□□□□□ -1.16
ATPAF1-212ENST00000542495 THOC2Q8NI27 1593 aaKnown RBP7.8□□□□□ -1.16
ATPAF1-212ENST00000542495 PDS5BQ9NTI5 1447 aa7.8□□□□□ -1.16
ATPAF1-212ENST00000542495 PRDM2Q13029 1718 aa7.79□□□□□ -1.16
ATPAF1-212ENST00000542495 RBM42Q9BTD8 480 aaKnown RBP7.79□□□□□ -1.16
ATPAF1-212ENST00000542495 KIF27Q86VH2 1401 aa7.79□□□□□ -1.16
ATPAF1-212ENST00000542495 ACIN1Q9UKV3 1341 aaKnown RBP7.78□□□□□ -1.16
ATPAF1-212ENST00000542495 ZNF316A6NFI3 1004 aaPredicted RBP7.78□□□□□ -1.16
ATPAF1-212ENST00000542495 SAMD1Q6SPF0 538 aaPredicted RBP7.78□□□□□ -1.16
ATPAF1-212ENST00000542495 APLP2Q06481 763 aa7.76□□□□□ -1.17
ATPAF1-212ENST00000542495 HNRNPUL2Q1KMD3 747 aaKnown RBP7.76□□□□□ -1.17
ATPAF1-212ENST00000542495 ZNF219Q9P2Y4 722 aaPredicted RBP7.76□□□□□ -1.17
ATPAF1-212ENST00000542495 KIF21AQ7Z4S6 1674 aa7.76□□□□□ -1.17
ATPAF1-212ENST00000542495 CADPSQ9ULU8 1353 aa7.75□□□□□ -1.17
ATPAF1-212ENST00000542495 NEUROD1Q13562 356 aa7.74□□□□□ -1.17
ATPAF1-212ENST00000542495 CLSPNQ9HAW4 1339 aa7.74□□□□□ -1.17
ATPAF1-212ENST00000542495 RRBP1Q9P2E9 1410 aaKnown RBP7.74□□□□□ -1.17
ATPAF1-212ENST00000542495 PELP1Q8IZL8 1130 aaKnown RBP7.74□□□□□ -1.17
ATPAF1-212ENST00000542495 ARHGAP35Q9NRY4 1499 aa7.73□□□□□ -1.17
ATPAF1-212ENST00000542495 PLCB2Q00722 1185 aa7.72□□□□□ -1.17
ATPAF1-212ENST00000542495 CENPBP07199 599 aaPredicted RBP7.71□□□□□ -1.17
ATPAF1-212ENST00000542495 IGF1RP08069 1367 aa7.71□□□□□ -1.17
ATPAF1-212ENST00000542495 MRC2Q9UBG0 1479 aa7.71□□□□□ -1.17
ATPAF1-212ENST00000542495 KANK4Q5T7N3 995 aaPredicted RBP7.71□□□□□ -1.18
ATPAF1-212ENST00000542495 DHX57Q6P158 1386 aaKnown RBP7.71□□□□□ -1.18
ATPAF1-212ENST00000542495 MAP3K1Q13233 1512 aa7.71□□□□□ -1.18
ATPAF1-212ENST00000542495 WDR62O43379 1518 aa7.69□□□□□ -1.18
ATPAF1-212ENST00000542495 RANGAP1P46060 587 aaPredicted RBP7.69□□□□□ -1.18
ATPAF1-212ENST00000542495 FBXO3Q9UK99 471 aa7.69□□□□□ -1.18
ATPAF1-212ENST00000542495 FGD5Q6ZNL6 1462 aa7.67□□□□□ -1.18
ATPAF1-212ENST00000542495 CCNB3Q8WWL7 1395 aa7.66□□□□□ -1.18
ATPAF1-212ENST00000542495 TIAM1Q13009 1591 aa7.66□□□□□ -1.18
ATPAF1-212ENST00000542495 CARMIL1Q5VZK9 1371 aa7.65□□□□□ -1.18
ATPAF1-212ENST00000542495 GTF3C3Q9Y5Q9 886 aa7.65□□□□□ -1.18
ATPAF1-212ENST00000542495 FANCD2Q9BXW9 1451 aa7.65□□□□□ -1.18
ATPAF1-212ENST00000542495 SPDYE4A6NLX3 237 aa7.64□□□□□ -1.19
ATPAF1-212ENST00000542495 MIER1Q8N108 512 aa7.64□□□□□ -1.19
ATPAF1-212ENST00000542495 PROM2Q8N271 834 aa7.64□□□□□ -1.19
ATPAF1-212ENST00000542495 DNMBPQ6XZF7 1577 aa7.63□□□□□ -1.19
ATPAF1-212ENST00000542495 PIP4P2Q8N4L2 257 aa7.63□□□□□ -1.19
ATPAF1-212ENST00000542495 LRRC9Q6ZRR7 1453 aa7.62□□□□□ -1.19
ATPAF1-212ENST00000542495 CFAP43Q8NDM7 1665 aa7.62□□□□□ -1.19
ATPAF1-212ENST00000542495 ABCA10Q8WWZ4 1543 aa7.62□□□□□ -1.19
ATPAF1-212ENST00000542495 VASPP50552 380 aaPredicted RBP7.61□□□□□ -1.19
ATPAF1-212ENST00000542495 FHAD1B1AJZ9 1412 aa7.61□□□□□ -1.19
ATPAF1-212ENST00000542495 OSCARQ8IYS5 282 aa7.61□□□□□ -1.19
ATPAF1-212ENST00000542495 MKRN4PQ13434 485 aaPredicted RBP7.6□□□□□ -1.19
ATPAF1-212ENST00000542495 EFCAB5A4FU69 1503 aa7.6□□□□□ -1.19
ATPAF1-212ENST00000542495 TOPBP1Q92547 1522 aa7.6□□□□□ -1.19
ATPAF1-212ENST00000542495 CUL7Q14999 1698 aa7.59□□□□□ -1.19
ATPAF1-212ENST00000542495 AQRO60306 1485 aaKnown RBP eCLIP7.59□□□□□ -1.19
ATPAF1-212ENST00000542495 HAX1O00165 279 aa7.59□□□□□ -1.19
ATPAF1-212ENST00000542495 MAPKBP1O60336 1514 aa7.59□□□□□ -1.19
ATPAF1-212ENST00000542495 PCF11O94913 1555 aaKnown RBP7.59□□□□□ -1.19
ATPAF1-212ENST00000542495 POLA1P09884 1462 aaPredicted RBP7.59□□□□□ -1.19
ATPAF1-212ENST00000542495 HAP1P54257 671 aaPredicted RBP7.59□□□□□ -1.2
ATPAF1-212ENST00000542495 PHLDB1Q86UU1 1377 aa7.58□□□□□ -1.2
ATPAF1-212ENST00000542495 RAB3GAP2Q9H2M9 1393 aa7.58□□□□□ -1.2
ATPAF1-212ENST00000542495 URB2Q14146 1524 aaKnown RBP7.58□□□□□ -1.2
ATPAF1-212ENST00000542495 EVX2Q03828 476 aa7.58□□□□□ -1.2
ATPAF1-212ENST00000542495 FYCO1Q9BQS8 1478 aa7.58□□□□□ -1.2
ATPAF1-212ENST00000542495 IFNLR1Q8IU57 520 aaPredicted RBP7.57□□□□□ -1.2
ATPAF1-212ENST00000542495 WDR97A6NE52 1622 aa7.57□□□□□ -1.2
ATPAF1-212ENST00000542495 RAD54L2Q9Y4B4 1467 aa7.57□□□□□ -1.2
ATPAF1-212ENST00000542495 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.57□□□□□ -1.2
ATPAF1-212ENST00000542495 CASKIN1Q8WXD9 1431 aa7.56□□□□□ -1.2
ATPAF1-212ENST00000542495 SETD5Q9C0A6 1442 aa7.56□□□□□ -1.2
ATPAF1-212ENST00000542495 CTTNBP2Q8WZ74 1663 aa7.56□□□□□ -1.2
ATPAF1-212ENST00000542495 YTHDC1Q96MU7 727 aaKnown RBP7.54□□□□□ -1.2
ATPAF1-212ENST00000542495 ABCA5Q8WWZ7 1642 aa7.54□□□□□ -1.2
ATPAF1-212ENST00000542495 PKD2Q13563 968 aa7.54□□□□□ -1.2
ATPAF1-212ENST00000542495 POLA2Q14181 598 aa7.54□□□□□ -1.2
ATPAF1-212ENST00000542495 FHOD3Q2V2M9 1422 aa7.53□□□□□ -1.2
ATPAF1-212ENST00000542495 BCANQ96GW7 911 aa7.53□□□□□ -1.2
ATPAF1-212ENST00000542495 SNAPC4Q5SXM2 1469 aa7.53□□□□□ -1.2
ATPAF1-212ENST00000542495 IFT140Q96RY7 1462 aa7.53□□□□□ -1.2
ATPAF1-212ENST00000542495 SAMD9Q5K651 1589 aa7.52□□□□□ -1.2
ATPAF1-212ENST00000542495 AKT1S1Q96B36 256 aa7.52□□□□□ -1.21
ATPAF1-212ENST00000542495 FMN1Q68DA7 1419 aa7.52□□□□□ -1.21
ATPAF1-212ENST00000542495 ITGAEP38570 1179 aa7.51□□□□□ -1.21
ATPAF1-212ENST00000542495 TIMELESSQ9UNS1 1208 aa7.51□□□□□ -1.21
ATPAF1-212ENST00000542495 PRKCSHP14314 528 aaPredicted RBP7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms