RNA–Protein interactions for RNA: ENST00000542001.5

VARS2-212, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VARS2, Length 4,064 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-212ENST00000542001 CARMIL1Q5VZK9 1371 aa22.23■■□□□ 1.15
VARS2-212ENST00000542001 MRS2Q9HD23 443 aa22.21■■□□□ 1.15
VARS2-212ENST00000542001 FOXD1Q16676 465 aa22.21■■□□□ 1.15
VARS2-212ENST00000542001 SMARCA4P51532 1647 aa22.17■■□□□ 1.14
VARS2-212ENST00000542001 SENP3Q9H4L4 574 aaPredicted RBP22.16■■□□□ 1.14
VARS2-212ENST00000542001 SUPT16HQ9Y5B9 1047 aaKnown RBP22.16■■□□□ 1.14
VARS2-212ENST00000542001 ATAD2BQ9ULI0 1458 aa22.12■■□□□ 1.13
VARS2-212ENST00000542001 CHMP7Q8WUX9 453 aaPredicted RBP22.12■■□□□ 1.13
VARS2-212ENST00000542001 DAXXQ9UER7 740 aaPredicted RBP22.11■■□□□ 1.13
VARS2-212ENST00000542001 RAB3GAP2Q9H2M9 1393 aa22.11■■□□□ 1.13
VARS2-212ENST00000542001 NPM2Q86SE8 214 aaKnown RBP22.11■■□□□ 1.13
VARS2-212ENST00000542001 TDRD9Q8NDG6 1382 aaKnown RBP22.1■■□□□ 1.13
VARS2-212ENST00000542001 CLSPNQ9HAW4 1339 aa22.1■■□□□ 1.13
VARS2-212ENST00000542001 EIF4G2P78344 907 aaKnown RBP eCLIP22.09■■□□□ 1.13
VARS2-212ENST00000542001 RGL3Q3MIN7 710 aa22.08■■□□□ 1.13
VARS2-212ENST00000542001 BCL11AQ9H165 835 aa22.08■■□□□ 1.13
VARS2-212ENST00000542001 SMARCA2P51531 1590 aa22.08■■□□□ 1.13
VARS2-212ENST00000542001 TMC1Q8TDI8 760 aa22.02■■□□□ 1.12
VARS2-212ENST00000542001 DHX57Q6P158 1386 aaKnown RBP21.99■■□□□ 1.11
VARS2-212ENST00000542001 CHGAP10645 457 aaKnown RBP21.98■■□□□ 1.11
VARS2-212ENST00000542001 TSPY4P0CV99 314 aa21.97■■□□□ 1.11
VARS2-212ENST00000542001 TSPY10P0CW01 314 aa21.97■■□□□ 1.11
VARS2-212ENST00000542001 FHOD3Q2V2M9 1422 aa21.97■■□□□ 1.11
VARS2-212ENST00000542001 SETD5Q9C0A6 1442 aa21.95■■□□□ 1.1
VARS2-212ENST00000542001 CFDP1Q9UEE9 299 aaPredicted RBP21.95■■□□□ 1.1
VARS2-212ENST00000542001 RTL5Q5HYW3 569 aaPredicted RBP21.95■■□□□ 1.1
VARS2-212ENST00000542001 EIF4G1Q04637 1599 aaKnown RBP21.9■■□□□ 1.1
VARS2-212ENST00000542001 CCDC136Q96JN2 1154 aa21.89■■□□□ 1.1
VARS2-212ENST00000542001 NBR1Q14596 966 aa21.87■■□□□ 1.09
VARS2-212ENST00000542001 HSPA5P11021 654 aaKnown RBP21.86■■□□□ 1.09
VARS2-212ENST00000542001 PPP1R15AO75807 674 aaPredicted RBP21.85■■□□□ 1.09
VARS2-212ENST00000542001 FHAD1B1AJZ9 1412 aa21.84■■□□□ 1.09
VARS2-212ENST00000542001 B4GALNT3Q6L9W6 998 aa21.84■■□□□ 1.09
VARS2-212ENST00000542001 PLEKHD1A6NEE1 506 aa21.83■■□□□ 1.08
VARS2-212ENST00000542001 CADPSQ9ULU8 1353 aa21.81■■□□□ 1.08
VARS2-212ENST00000542001 SYNJ1O43426 1573 aa21.79■■□□□ 1.08
VARS2-212ENST00000542001 CARD11Q9BXL7 1154 aa21.78■■□□□ 1.08
VARS2-212ENST00000542001 CANXP27824 592 aaKnown RBP21.77■■□□□ 1.08
VARS2-212ENST00000542001 IGF1RP08069 1367 aa21.77■■□□□ 1.07
VARS2-212ENST00000542001 ARHGAP35Q9NRY4 1499 aa21.76■■□□□ 1.07
VARS2-212ENST00000542001 KIF21BO75037 1637 aa21.74■■□□□ 1.07
VARS2-212ENST00000542001 ANP32AP39687 249 aaKnown RBP21.74■■□□□ 1.07
VARS2-212ENST00000542001 L3MBTL2Q969R5 705 aa21.74■■□□□ 1.07
VARS2-212ENST00000542001 MPHOSPH9Q99550 1183 aa21.72■■□□□ 1.07
VARS2-212ENST00000542001 ARAP1Q96P48 1450 aa21.71■■□□□ 1.07
VARS2-212ENST00000542001 DCAF11Q8TEB1 546 aa21.7■■□□□ 1.06
VARS2-212ENST00000542001 RAD54L2Q9Y4B4 1467 aa21.69■■□□□ 1.06
VARS2-212ENST00000542001 TSHZ2Q9NRE2 1034 aa21.69■■□□□ 1.06
VARS2-212ENST00000542001 PHLDB1Q86UU1 1377 aa21.68■■□□□ 1.06
VARS2-212ENST00000542001 PLPPR3Q6T4P5 718 aa21.68■■□□□ 1.06
VARS2-212ENST00000542001 PKD2Q13563 968 aa21.67■■□□□ 1.06
VARS2-212ENST00000542001 CC2D1BQ5T0F9 858 aaKnown RBP21.65■■□□□ 1.06
VARS2-212ENST00000542001 RBM19Q9Y4C8 960 aaKnown RBP21.62■■□□□ 1.05
VARS2-212ENST00000542001 FGD5Q6ZNL6 1462 aa21.58■■□□□ 1.05
VARS2-212ENST00000542001 ZNF644Q9H582 1327 aaPredicted RBP21.58■■□□□ 1.05
VARS2-212ENST00000542001 ANP32EQ9BTT0 268 aa21.58■■□□□ 1.05
VARS2-212ENST00000542001 DNAJC5BQ9UF47 199 aa21.58■■□□□ 1.04
VARS2-212ENST00000542001 TIMELESSQ9UNS1 1208 aa21.57■■□□□ 1.04
VARS2-212ENST00000542001 CCER2I3L3R5 266 aa21.56■■□□□ 1.04
VARS2-212ENST00000542001 WDR43Q15061 677 aaKnown RBP eCLIP21.56■■□□□ 1.04
VARS2-212ENST00000542001 FANCD2Q9BXW9 1451 aa21.55■■□□□ 1.04
VARS2-212ENST00000542001 TNNT2P45379 298 aaPredicted RBP21.55■■□□□ 1.04
VARS2-212ENST00000542001 NEUROD2Q15784 382 aa21.55■■□□□ 1.04
VARS2-212ENST00000542001 FMN1Q68DA7 1419 aa21.53■■□□□ 1.04
VARS2-212ENST00000542001 SLC24A1O60721 1099 aa21.53■■□□□ 1.04
VARS2-212ENST00000542001 ZBTB47Q9UFB7 747 aaPredicted RBP21.51■■□□□ 1.03
VARS2-212ENST00000542001 HNRNPMP52272 730 aaKnown RBP eCLIP21.51■■□□□ 1.03
VARS2-212ENST00000542001 ERCC6Q03468 1493 aa21.5■■□□□ 1.03
VARS2-212ENST00000542001 PPP4R2Q9NY27 417 aa21.5■■□□□ 1.03
VARS2-212ENST00000542001 ARXQ96QS3 562 aa21.46■■□□□ 1.03
VARS2-212ENST00000542001 NESP48681 1621 aa21.44■■□□□ 1.02
VARS2-212ENST00000542001 NUP155O75694 1391 aa21.44■■□□□ 1.02
VARS2-212ENST00000542001 STAG3Q9UJ98 1225 aa21.44■■□□□ 1.02
VARS2-212ENST00000542001 NPM1P06748 294 aaKnown RBP eCLIP21.43■■□□□ 1.02
VARS2-212ENST00000542001 PRXQ9BXM0 1461 aa21.42■■□□□ 1.02
VARS2-212ENST00000542001 PDS5BQ9NTI5 1447 aa21.42■■□□□ 1.02
VARS2-212ENST00000542001 CUX1P39880 1505 aa21.4■■□□□ 1.02
VARS2-212ENST00000542001 NCAPD3P42695 1498 aa21.4■■□□□ 1.02
VARS2-212ENST00000542001 KNSTRNQ9Y448 316 aa21.4■■□□□ 1.02
VARS2-212ENST00000542001 CCDC18Q5T9S5 1454 aa21.38■■□□□ 1.01
VARS2-212ENST00000542001 LRRC9Q6ZRR7 1453 aa21.38■■□□□ 1.01
VARS2-212ENST00000542001 LAS1LQ9Y4W2 734 aaKnown RBP21.38■■□□□ 1.01
VARS2-212ENST00000542001 RGS3P49796 1198 aa21.36■■□□□ 1.01
VARS2-212ENST00000542001 JPH4Q96JJ6 628 aa21.36■■□□□ 1.01
VARS2-212ENST00000542001 ST20-MTHFSA0A0A6YYL1 179 aa21.35■■□□□ 1.01
VARS2-212ENST00000542001 PLEKHG5O94827 1062 aa21.34■■□□□ 1.01
VARS2-212ENST00000542001 SAFB2Q14151 953 aaKnown RBP eCLIP21.34■■□□□ 1.01
VARS2-212ENST00000542001 BICRAQ9NZM4 1560 aa21.34■■□□□ 1.01
VARS2-212ENST00000542001 PRKRIP1Q9H875 184 aaPredicted RBP21.34■■□□□ 1.01
VARS2-212ENST00000542001 CCDC184Q52MB2 194 aa21.33■■□□□ 1.01
VARS2-212ENST00000542001 AQRO60306 1485 aaKnown RBP eCLIP21.33■■□□□ 14e-6■■■■□ 23.2
VARS2-212ENST00000542001 FGD6Q6ZV73 1430 aa21.32■■□□□ 1
VARS2-212ENST00000542001 CFTRP13569 1480 aa21.31■■□□□ 1
VARS2-212ENST00000542001 RRBP1Q9P2E9 1410 aaKnown RBP21.3■■□□□ 1
VARS2-212ENST00000542001 PPM1GO15355 546 aaPredicted RBP21.3■■□□□ 1
VARS2-212ENST00000542001 WASHC2AQ641Q2 1341 aa21.29■■□□□ 1
VARS2-212ENST00000542001 NEFMP07197 916 aa21.28■■□□□ 1
VARS2-212ENST00000542001 FRAT1Q92837 279 aaPredicted RBP21.27■■□□□ 1
VARS2-212ENST00000542001 GAPVD1Q14C86 1478 aa21.26■□□□□ 0.99
VARS2-212ENST00000542001 TOP2BQ02880 1626 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms