RNA–Protein interactions for RNA: ENST00000541586.5

CCM2-218, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,719 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-218ENST00000541586 GOLGA3Q08378 1498 aa44.76■■■■■ 4.76
CCM2-218ENST00000541586 CLASP1Q7Z460 1538 aa44.72■■■■■ 4.75
CCM2-218ENST00000541586 KIAA0586Q9BVV6 1533 aa44.71■■■■■ 4.75
CCM2-218ENST00000541586 JPH4Q96JJ6 628 aa44.66■■■■■ 4.74
CCM2-218ENST00000541586 RANGAP1P46060 587 aaPredicted RBP44.6■■■■■ 4.73
CCM2-218ENST00000541586 DNAJC5Q9H3Z4 198 aa44.58■■■■■ 4.73
CCM2-218ENST00000541586 CTTNBP2Q8WZ74 1663 aa44.55■■■■■ 4.72
CCM2-218ENST00000541586 IQGAP2Q13576 1575 aa44.55■■■■■ 4.72
CCM2-218ENST00000541586 TNIKQ9UKE5 1360 aa44.53■■■■■ 4.72
CCM2-218ENST00000541586 PRG4Q92954 1404 aaPredicted RBP44.43■■■■■ 4.7
CCM2-218ENST00000541586 SHROOM2Q13796 1616 aa44.39■■■■■ 4.7
CCM2-218ENST00000541586 ARHGEF11O15085 1522 aa44.32■■■■■ 4.69
CCM2-218ENST00000541586 ERCC6L2Q5T890 1561 aa44.31■■■■■ 4.68
CCM2-218ENST00000541586 UGGT2Q9NYU1 1516 aa44.3■■■■■ 4.68
CCM2-218ENST00000541586 P3H3Q8IVL6 736 aa44.29■■■■■ 4.68
CCM2-218ENST00000541586 CEP162Q5TB80 1403 aa44.28■■■■■ 4.68
CCM2-218ENST00000541586 TTBK1Q5TCY1 1321 aaPredicted RBP44.27■■■■■ 4.68
CCM2-218ENST00000541586 CARMIL2Q6F5E8 1435 aa44.26■■■■■ 4.68
CCM2-218ENST00000541586 RIMBP3CA6NJZ7 1639 aa44.23■■■■■ 4.67
CCM2-218ENST00000541586 RIMBP3BA6NNM3 1639 aa44.23■■■■■ 4.67
CCM2-218ENST00000541586 RIMBP3Q9UFD9 1639 aa44.23■■■■■ 4.67
CCM2-218ENST00000541586 DISP1Q96F81 1524 aa44.21■■■■■ 4.67
CCM2-218ENST00000541586 CYB5RLQ6IPT4 315 aa44.11■■■■■ 4.65
CCM2-218ENST00000541586 KIAA0556O60303 1618 aa44.1■■■■■ 4.65
CCM2-218ENST00000541586 CLIP1P30622 1438 aa44.04■■■■■ 4.64
CCM2-218ENST00000541586 ARAP1Q96P48 1450 aa44.03■■■■■ 4.64
CCM2-218ENST00000541586 SAMD9Q5K651 1589 aa44.02■■■■■ 4.64
CCM2-218ENST00000541586 PTPRGP23470 1445 aa44.02■■■■■ 4.64
CCM2-218ENST00000541586 ARHGAP35Q9NRY4 1499 aa44■■■■■ 4.63
CCM2-218ENST00000541586 FHOD3Q2V2M9 1422 aa43.99■■■■■ 4.63
CCM2-218ENST00000541586 EFCAB5A4FU69 1503 aa43.98■■■■■ 4.63
CCM2-218ENST00000541586 PLB1Q6P1J6 1458 aa43.71■■■■■ 4.59
CCM2-218ENST00000541586 UACAQ9BZF9 1416 aa43.7■■■■■ 4.59
CCM2-218ENST00000541586 ATP1B4Q9UN42 357 aaPredicted RBP43.68■■■■■ 4.58
CCM2-218ENST00000541586 FMN1Q68DA7 1419 aa43.67■■■■■ 4.58
CCM2-218ENST00000541586 ARID3CA6NKF2 412 aa43.61■■■■■ 4.57
CCM2-218ENST00000541586 VPS8Q8N3P4 1428 aa43.57■■■■■ 4.57
CCM2-218ENST00000541586 ABCA8O94911 1581 aa43.56■■■■■ 4.56
CCM2-218ENST00000541586 NPM1P06748 294 aaKnown RBP eCLIP43.55■■■■■ 4.56
CCM2-218ENST00000541586 ADCY10Q96PN6 1610 aa43.55■■■■■ 4.56
CCM2-218ENST00000541586 ABCC2Q92887 1545 aa43.53■■■■■ 4.56
CCM2-218ENST00000541586 RAPGEF6Q8TEU7 1601 aa43.51■■■■■ 4.56
CCM2-218ENST00000541586 UHRF1BP1LA0JNW5 1464 aa43.5■■■■■ 4.55
CCM2-218ENST00000541586 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP43.45■■■■■ 4.55
CCM2-218ENST00000541586 HNRNPUL2Q1KMD3 747 aaKnown RBP43.45■■■■■ 4.55
CCM2-218ENST00000541586 CASKIN1Q8WXD9 1431 aa43.39■■■■■ 4.54
CCM2-218ENST00000541586 NUP153P49790 1475 aaKnown RBP43.39■■■■■ 4.54
CCM2-218ENST00000541586 PCF11O94913 1555 aaKnown RBP43.37■■■■■ 4.53
CCM2-218ENST00000541586 KDM5BQ9UGL1 1544 aa43.33■■■■■ 4.53
CCM2-218ENST00000541586 ATP10BO94823 1461 aa43.32■■■■■ 4.53
CCM2-218ENST00000541586 HECW1Q76N89 1606 aa43.31■■■■■ 4.52
CCM2-218ENST00000541586 FYCO1Q9BQS8 1478 aa43.29■■■■■ 4.52
CCM2-218ENST00000541586 ZCCHC11Q5TAX3 1644 aaKnown RBP43.26■■■■■ 4.52
CCM2-218ENST00000541586 PPARGC1BQ86YN6 1023 aaKnown RBP43.25■■■■■ 4.51
CCM2-218ENST00000541586 EPRSP07814 1512 aaKnown RBP43.23■■■■■ 4.51
CCM2-218ENST00000541586 CDK13Q14004 1512 aaKnown RBP43.23■■■■■ 4.51
CCM2-218ENST00000541586 ASXL2Q76L83 1435 aa43.14■■■■■ 4.5
CCM2-218ENST00000541586 PLEKHD1A6NEE1 506 aa43.14■■■■■ 4.5
CCM2-218ENST00000541586 LRRIQ1Q96JM4 1722 aa43.13■■■■■ 4.5
CCM2-218ENST00000541586 APLP2Q06481 763 aa43.11■■■■■ 4.49
CCM2-218ENST00000541586 CCDC18Q5T9S5 1454 aa43.1■■■■■ 4.49
CCM2-218ENST00000541586 KCNH8Q96L42 1107 aa43.1■■■■■ 4.49
CCM2-218ENST00000541586 CDK11AQ9UQ88 783 aaPredicted RBP43.1■■■■■ 4.49
CCM2-218ENST00000541586 MAPKBP1O60336 1514 aa43.06■■■■■ 4.48
CCM2-218ENST00000541586 TRIM26Q12899 539 aaPredicted RBP43.05■■■■■ 4.48
CCM2-218ENST00000541586 TRHP20396 242 aaPredicted RBP43.01■■■■■ 4.48
CCM2-218ENST00000541586 WDR7Q9Y4E6 1490 aa42.99■■■■■ 4.47
CCM2-218ENST00000541586 PCGF6Q9BYE7 350 aa42.97■■■■■ 4.47
CCM2-218ENST00000541586 FAM69CQ0P6D2 419 aa42.93■■■■■ 4.46
CCM2-218ENST00000541586 MTUS2Q5JR59 1369 aa42.9■■■■■ 4.46
CCM2-218ENST00000541586 TIAM1Q13009 1591 aa42.88■■■■■ 4.46
CCM2-218ENST00000541586 KANK4Q5T7N3 995 aaPredicted RBP42.88■■■■■ 4.45
CCM2-218ENST00000541586 ABCC10Q5T3U5 1492 aa42.85■■■■■ 4.45
CCM2-218ENST00000541586 MAGI3Q5TCQ9 1506 aa42.85■■■■■ 4.45
CCM2-218ENST00000541586 TROQ12816 1431 aaPredicted RBP42.85■■■■■ 4.45
CCM2-218ENST00000541586 MAP3K1Q13233 1512 aa42.84■■■■■ 4.45
CCM2-218ENST00000541586 CFAP43Q8NDM7 1665 aa42.81■■■■■ 4.44
CCM2-218ENST00000541586 DIP2BQ9P265 1576 aa42.75■■■■■ 4.43
CCM2-218ENST00000541586 LRRC9Q6ZRR7 1453 aa42.75■■■■■ 4.43
CCM2-218ENST00000541586 KIF14Q15058 1648 aa42.67■■■■■ 4.42
CCM2-218ENST00000541586 EHBP1L1Q8N3D4 1523 aa42.67■■■■■ 4.42
CCM2-218ENST00000541586 KIF13AQ9H1H9 1805 aa42.66■■■■■ 4.42
CCM2-218ENST00000541586 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP42.63■■■■■ 4.414e-7■■■□□ 18.4
CCM2-218ENST00000541586 GLI2P10070 1586 aa42.63■■■■■ 4.41
CCM2-218ENST00000541586 CD109Q6YHK3 1445 aa42.6■■■■■ 4.41
CCM2-218ENST00000541586 ABCA9Q8IUA7 1624 aa42.55■■■■■ 4.4
CCM2-218ENST00000541586 TTC37Q6PGP7 1564 aa42.55■■■■■ 4.4
CCM2-218ENST00000541586 TSPOAP1O95153 1857 aa42.52■■■■■ 4.4
CCM2-218ENST00000541586 SUPT6HQ7KZ85 1726 aaKnown RBP42.51■■■■■ 4.4
CCM2-218ENST00000541586 NCOA2Q15596 1464 aa42.51■■■■■ 4.4
CCM2-218ENST00000541586 CCNB3Q8WWL7 1395 aa42.49■■■■■ 4.39
CCM2-218ENST00000541586 MAP3K4Q9Y6R4 1608 aa42.48■■■■■ 4.39
CCM2-218ENST00000541586 PLCH2O75038 1416 aa42.4■■■■■ 4.38
CCM2-218ENST00000541586 GPATCH8Q9UKJ3 1502 aaKnown RBP42.38■■■■■ 4.37
CCM2-218ENST00000541586 CFDP1Q9UEE9 299 aaPredicted RBP42.37■■■■■ 4.37
CCM2-218ENST00000541586 ZNF777Q9ULD5 760 aaPredicted RBP42.36■■■■■ 4.37
CCM2-218ENST00000541586 MYO5CQ9NQX4 1742 aa42.35■■■■■ 4.37
CCM2-218ENST00000541586 EFCAB2Q5VUJ9 269 aa42.34■■■■■ 4.37
CCM2-218ENST00000541586 PHLDB1Q86UU1 1377 aa42.33■■■■■ 4.37
CCM2-218ENST00000541586 ARHGAP5Q13017 1502 aa42.31■■■■■ 4.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms