RNA–Protein interactions for RNA: ENST00000540060.1

LPCAT3-209, Transcript of lysophosphatidylcholine acyltransferase 3, humanhuman

TSL 4

Gene LPCAT3, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LPCAT3-209ENST00000540060 TRIM41Q8WV44 630 aa11.88□□□□□ -0.51
LPCAT3-209ENST00000540060 SP7Q8TDD2 431 aaPredicted RBP11.86□□□□□ -0.51
LPCAT3-209ENST00000540060 RUSC2Q8N2Y8 1516 aa11.86□□□□□ -0.51
LPCAT3-209ENST00000540060 FHAD1B1AJZ9 1412 aa11.86□□□□□ -0.51
LPCAT3-209ENST00000540060 GRIN2AQ12879 1464 aa11.85□□□□□ -0.51
LPCAT3-209ENST00000540060 CLASP1Q7Z460 1538 aa11.84□□□□□ -0.51
LPCAT3-209ENST00000540060 CEP170Q5SW79 1584 aa11.83□□□□□ -0.52
LPCAT3-209ENST00000540060 IGF1RP08069 1367 aa11.82□□□□□ -0.52
LPCAT3-209ENST00000540060 NUP160Q12769 1436 aa11.79□□□□□ -0.52
LPCAT3-209ENST00000540060 FBLN2P98095 1184 aa11.79□□□□□ -0.52
LPCAT3-209ENST00000540060 OSCARQ8IYS5 282 aa11.79□□□□□ -0.52
LPCAT3-209ENST00000540060 CHMP7Q8WUX9 453 aaPredicted RBP11.79□□□□□ -0.52
LPCAT3-209ENST00000540060 EEA1Q15075 1411 aa11.77□□□□□ -0.53
LPCAT3-209ENST00000540060 SHROOM2Q13796 1616 aa11.76□□□□□ -0.53
LPCAT3-209ENST00000540060 CTTNBP2Q8WZ74 1663 aa11.76□□□□□ -0.53
LPCAT3-209ENST00000540060 CARMIL1Q5VZK9 1371 aa11.75□□□□□ -0.53
LPCAT3-209ENST00000540060 RIMBP3CA6NJZ7 1639 aa11.75□□□□□ -0.53
LPCAT3-209ENST00000540060 RIMBP3BA6NNM3 1639 aa11.75□□□□□ -0.53
LPCAT3-209ENST00000540060 RIMBP3Q9UFD9 1639 aa11.75□□□□□ -0.53
LPCAT3-209ENST00000540060 RAPGEF2Q9Y4G8 1499 aa11.74□□□□□ -0.53
LPCAT3-209ENST00000540060 ARHGEF11O15085 1522 aa11.73□□□□□ -0.53
LPCAT3-209ENST00000540060 PRXQ9BXM0 1461 aa11.73□□□□□ -0.53
LPCAT3-209ENST00000540060 KIF21BO75037 1637 aa11.72□□□□□ -0.53
LPCAT3-209ENST00000540060 IQGAP2Q13576 1575 aa11.69□□□□□ -0.54
LPCAT3-209ENST00000540060 KIAA0586Q9BVV6 1533 aa11.68□□□□□ -0.54
LPCAT3-209ENST00000540060 ERCC6L2Q5T890 1561 aa11.67□□□□□ -0.54
LPCAT3-209ENST00000540060 DSG3P32926 999 aa11.66□□□□□ -0.54
LPCAT3-209ENST00000540060 CSRNP3Q8WYN3 585 aa11.65□□□□□ -0.54
LPCAT3-209ENST00000540060 ARAP1Q96P48 1450 aa11.63□□□□□ -0.55
LPCAT3-209ENST00000540060 FAM9AQ8IZU1 332 aaPredicted RBP11.62□□□□□ -0.55
LPCAT3-209ENST00000540060 UGGT2Q9NYU1 1516 aa11.61□□□□□ -0.55
LPCAT3-209ENST00000540060 PRG4Q92954 1404 aaPredicted RBP11.6□□□□□ -0.55
LPCAT3-209ENST00000540060 GOLGA3Q08378 1498 aa11.59□□□□□ -0.55
LPCAT3-209ENST00000540060 KIAA0556O60303 1618 aa11.59□□□□□ -0.55
LPCAT3-209ENST00000540060 PLSCR2Q9NRY7 297 aa11.58□□□□□ -0.56
LPCAT3-209ENST00000540060 DISP1Q96F81 1524 aa11.57□□□□□ -0.56
LPCAT3-209ENST00000540060 RNF216Q9NWF9 866 aaPredicted RBP11.57□□□□□ -0.56
LPCAT3-209ENST00000540060 SAMD9Q5K651 1589 aa11.57□□□□□ -0.56
LPCAT3-209ENST00000540060 JPH4Q96JJ6 628 aa11.56□□□□□ -0.56
LPCAT3-209ENST00000540060 CARMIL2Q6F5E8 1435 aa11.52□□□□□ -0.56
LPCAT3-209ENST00000540060 EFCAB5A4FU69 1503 aa11.5□□□□□ -0.57
LPCAT3-209ENST00000540060 ADCY10Q96PN6 1610 aa11.5□□□□□ -0.57
LPCAT3-209ENST00000540060 CYB5RLQ6IPT4 315 aa11.48□□□□□ -0.57
LPCAT3-209ENST00000540060 CHRDL2Q6WN34 429 aa11.48□□□□□ -0.57
LPCAT3-209ENST00000540060 TNIKQ9UKE5 1360 aa11.48□□□□□ -0.57
LPCAT3-209ENST00000540060 EHMT2Q96KQ7 1210 aa11.45□□□□□ -0.58
LPCAT3-209ENST00000540060 PTPRGP23470 1445 aa11.44□□□□□ -0.58
LPCAT3-209ENST00000540060 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.44□□□□□ -0.58
LPCAT3-209ENST00000540060 ABCA8O94911 1581 aa11.44□□□□□ -0.58
LPCAT3-209ENST00000540060 ABCC2Q92887 1545 aa11.44□□□□□ -0.58
LPCAT3-209ENST00000540060 UBTFP17480 764 aaKnown RBP11.43□□□□□ -0.58
LPCAT3-209ENST00000540060 UHRF1BP1LA0JNW5 1464 aa11.43□□□□□ -0.58
LPCAT3-209ENST00000540060 ARHGAP35Q9NRY4 1499 aa11.43□□□□□ -0.58
LPCAT3-209ENST00000540060 FHOD3Q2V2M9 1422 aa11.42□□□□□ -0.58
LPCAT3-209ENST00000540060 RAPGEF6Q8TEU7 1601 aa11.42□□□□□ -0.58
LPCAT3-209ENST00000540060 ZCCHC11Q5TAX3 1644 aaKnown RBP11.41□□□□□ -0.58
LPCAT3-209ENST00000540060 PLB1Q6P1J6 1458 aa11.4□□□□□ -0.58
LPCAT3-209ENST00000540060 UACAQ9BZF9 1416 aa11.4□□□□□ -0.58
LPCAT3-209ENST00000540060 MAPKBP1O60336 1514 aa11.4□□□□□ -0.59
LPCAT3-209ENST00000540060 TTBK1Q5TCY1 1321 aaPredicted RBP11.37□□□□□ -0.59
LPCAT3-209ENST00000540060 KIF13AQ9H1H9 1805 aa11.37□□□□□ -0.59
LPCAT3-209ENST00000540060 KDM5BQ9UGL1 1544 aa11.37□□□□□ -0.59
LPCAT3-209ENST00000540060 RANGAP1P46060 587 aaPredicted RBP11.37□□□□□ -0.59
LPCAT3-209ENST00000540060 LRRIQ1Q96JM4 1722 aa11.37□□□□□ -0.59
LPCAT3-209ENST00000540060 P3H3Q8IVL6 736 aa11.36□□□□□ -0.59
LPCAT3-209ENST00000540060 CLIP1P30622 1438 aa11.35□□□□□ -0.59
LPCAT3-209ENST00000540060 PCF11O94913 1555 aaKnown RBP11.35□□□□□ -0.59
LPCAT3-209ENST00000540060 HECW1Q76N89 1606 aa11.35□□□□□ -0.59
LPCAT3-209ENST00000540060 CEP162Q5TB80 1403 aa11.35□□□□□ -0.59
LPCAT3-209ENST00000540060 CAPN15O75808 1086 aa11.34□□□□□ -0.59
LPCAT3-209ENST00000540060 FMN1Q68DA7 1419 aa11.34□□□□□ -0.59
LPCAT3-209ENST00000540060 DIP2BQ9P265 1576 aa11.33□□□□□ -0.6
LPCAT3-209ENST00000540060 NUP153P49790 1475 aaKnown RBP11.33□□□□□ -0.6
LPCAT3-209ENST00000540060 LOC105371045A0A1W2PR82 267 aa11.31□□□□□ -0.6
LPCAT3-209ENST00000540060 SPINK5Q9NQ38 1064 aaPredicted RBP11.3□□□□□ -0.6
LPCAT3-209ENST00000540060 CNKSR2Q8WXI2 1034 aa11.29□□□□□ -0.6
LPCAT3-209ENST00000540060 ASXL2Q76L83 1435 aa11.28□□□□□ -0.6
LPCAT3-209ENST00000540060 ATP10BO94823 1461 aa11.28□□□□□ -0.6
LPCAT3-209ENST00000540060 ABCC10Q5T3U5 1492 aa11.28□□□□□ -0.6
LPCAT3-209ENST00000540060 FYCO1Q9BQS8 1478 aa11.28□□□□□ -0.6
LPCAT3-209ENST00000540060 WDR7Q9Y4E6 1490 aa11.27□□□□□ -0.6
LPCAT3-209ENST00000540060 CDK13Q14004 1512 aaKnown RBP11.27□□□□□ -0.61
LPCAT3-209ENST00000540060 NPM1P06748 294 aaKnown RBP eCLIP11.27□□□□□ -0.61
LPCAT3-209ENST00000540060 GLI2P10070 1586 aa11.27□□□□□ -0.61
LPCAT3-209ENST00000540060 CASKIN1Q8WXD9 1431 aa11.26□□□□□ -0.61
LPCAT3-209ENST00000540060 EPRSP07814 1512 aaKnown RBP11.26□□□□□ -0.61
LPCAT3-209ENST00000540060 MAP3K4Q9Y6R4 1608 aa11.26□□□□□ -0.61
LPCAT3-209ENST00000540060 CFAP43Q8NDM7 1665 aa11.25□□□□□ -0.61
LPCAT3-209ENST00000540060 PPRC1Q5VV67 1664 aaKnown RBP11.24□□□□□ -0.61
LPCAT3-209ENST00000540060 CCDC18Q5T9S5 1454 aa11.24□□□□□ -0.61
LPCAT3-209ENST00000540060 TSPOAP1O95153 1857 aa11.23□□□□□ -0.61
LPCAT3-209ENST00000540060 ABCA9Q8IUA7 1624 aa11.23□□□□□ -0.61
LPCAT3-209ENST00000540060 VPS8Q8N3P4 1428 aa11.21□□□□□ -0.61
LPCAT3-209ENST00000540060 ARID3CA6NKF2 412 aa11.21□□□□□ -0.61
LPCAT3-209ENST00000540060 TRHP20396 242 aaPredicted RBP11.2□□□□□ -0.62
LPCAT3-209ENST00000540060 MAGI3Q5TCQ9 1506 aa11.19□□□□□ -0.62
LPCAT3-209ENST00000540060 KIF14Q15058 1648 aa11.19□□□□□ -0.62
LPCAT3-209ENST00000540060 TTC37Q6PGP7 1564 aa11.19□□□□□ -0.62
LPCAT3-209ENST00000540060 RBM42Q9BTD8 480 aaKnown RBP11.18□□□□□ -0.62
LPCAT3-209ENST00000540060 TIAM1Q13009 1591 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms