RNA–Protein interactions for RNA: ENST00000537750.5

SYNE1-236, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 2,850 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-236ENST00000537750 ANP32CO43423 234 aa21.05■□□□□ 0.96
SYNE1-236ENST00000537750 CCER2I3L3R5 266 aa21.03■□□□□ 0.96
SYNE1-236ENST00000537750 SETD5Q9C0A6 1442 aa21.02■□□□□ 0.96
SYNE1-236ENST00000537750 IRX6P78412 446 aaPredicted RBP21.01■□□□□ 0.95
SYNE1-236ENST00000537750 ARHGAP35Q9NRY4 1499 aa21.01■□□□□ 0.95
SYNE1-236ENST00000537750 FAM50AQ14320 339 aaKnown RBP20.97■□□□□ 0.95
SYNE1-236ENST00000537750 BIVM-ERCC5R4GMW8 1640 aa20.95■□□□□ 0.94
SYNE1-236ENST00000537750 ERICH6Q7L0X2 663 aa20.91■□□□□ 0.94
SYNE1-236ENST00000537750 FANCIQ9NVI1 1328 aa20.91■□□□□ 0.94
SYNE1-236ENST00000537750 CDK11AQ9UQ88 783 aaPredicted RBP20.9■□□□□ 0.94
SYNE1-236ENST00000537750 PHLDB1Q86UU1 1377 aa20.89■□□□□ 0.94
SYNE1-236ENST00000537750 KIF27Q86VH2 1401 aa20.89■□□□□ 0.93
SYNE1-236ENST00000537750 HNRNPUQ00839 825 aaKnown RBP eCLIP20.88■□□□□ 0.93
SYNE1-236ENST00000537750 TIMELESSQ9UNS1 1208 aa20.85■□□□□ 0.93
SYNE1-236ENST00000537750 TIAM1Q13009 1591 aa20.83■□□□□ 0.93
SYNE1-236ENST00000537750 CUX1P39880 1505 aa20.83■□□□□ 0.92
SYNE1-236ENST00000537750 LRRC9Q6ZRR7 1453 aa20.8■□□□□ 0.92
SYNE1-236ENST00000537750 ATP1B4Q9UN42 357 aaPredicted RBP20.8■□□□□ 0.92
SYNE1-236ENST00000537750 P3H3Q8IVL6 736 aa20.76■□□□□ 0.91
SYNE1-236ENST00000537750 TONSLQ96HA7 1378 aa20.75■□□□□ 0.91
SYNE1-236ENST00000537750 MAP3K1Q13233 1512 aa20.72■□□□□ 0.91
SYNE1-236ENST00000537750 DEKP35659 375 aaKnown RBP20.7■□□□□ 0.9
SYNE1-236ENST00000537750 PPP4R2Q9NY27 417 aa20.68■□□□□ 0.9
SYNE1-236ENST00000537750 IGF1RP08069 1367 aa20.67■□□□□ 0.9
SYNE1-236ENST00000537750 B4GALNT3Q6L9W6 998 aa20.67■□□□□ 0.9
SYNE1-236ENST00000537750 CCDC184Q52MB2 194 aa20.66■□□□□ 0.9
SYNE1-236ENST00000537750 WASHC2AQ641Q2 1341 aa20.6■□□□□ 0.89
SYNE1-236ENST00000537750 CARMIL1Q5VZK9 1371 aa20.6■□□□□ 0.89
SYNE1-236ENST00000537750 NBR1Q14596 966 aa20.6■□□□□ 0.89
SYNE1-236ENST00000537750 ERICH6BQ5W0A0 696 aa20.59■□□□□ 0.89
SYNE1-236ENST00000537750 FAM9BQ8IZU0 186 aa20.57■□□□□ 0.88
SYNE1-236ENST00000537750 MYT1LQ9UL68 1186 aa20.57■□□□□ 0.88
SYNE1-236ENST00000537750 FHAD1B1AJZ9 1412 aa20.57■□□□□ 0.88
SYNE1-236ENST00000537750 PCF11O94913 1555 aaKnown RBP20.57■□□□□ 0.88
SYNE1-236ENST00000537750 PAK3O75914 559 aaPredicted RBP20.56■□□□□ 0.88
SYNE1-236ENST00000537750 HSPA5P11021 654 aaKnown RBP20.56■□□□□ 0.88
SYNE1-236ENST00000537750 CFTRP13569 1480 aa20.56■□□□□ 0.88
SYNE1-236ENST00000537750 CCDC18Q5T9S5 1454 aa20.55■□□□□ 0.88
SYNE1-236ENST00000537750 NOP58Q9Y2X3 529 aaKnown RBP20.53■□□□□ 0.88
SYNE1-236ENST00000537750 NCAPD3P42695 1498 aa20.53■□□□□ 0.88
SYNE1-236ENST00000537750 CFAP43Q8NDM7 1665 aa20.52■□□□□ 0.88
SYNE1-236ENST00000537750 FHOD3Q2V2M9 1422 aa20.52■□□□□ 0.88
SYNE1-236ENST00000537750 PTPRKQ15262 1439 aa20.51■□□□□ 0.87
SYNE1-236ENST00000537750 UACAQ9BZF9 1416 aa20.5■□□□□ 0.87
SYNE1-236ENST00000537750 HMGXB3Q12766 1538 aa20.49■□□□□ 0.87
SYNE1-236ENST00000537750 AQRO60306 1485 aaKnown RBP eCLIP20.49■□□□□ 0.87
SYNE1-236ENST00000537750 KDM5BQ9UGL1 1544 aa20.48■□□□□ 0.87
SYNE1-236ENST00000537750 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.48■□□□□ 0.87
SYNE1-236ENST00000537750 FGD6Q6ZV73 1430 aa20.47■□□□□ 0.87
SYNE1-236ENST00000537750 MRS2Q9HD23 443 aa20.47■□□□□ 0.87
SYNE1-236ENST00000537750 PRKCSHP14314 528 aaPredicted RBP20.46■□□□□ 0.87
SYNE1-236ENST00000537750 C11orf95C9JLR9 678 aaPredicted RBP20.45■□□□□ 0.86
SYNE1-236ENST00000537750 PRKRIP1Q9H875 184 aaPredicted RBP20.44■□□□□ 0.86
SYNE1-236ENST00000537750 HFM1A2PYH4 1435 aa20.44■□□□□ 0.86
SYNE1-236ENST00000537750 EIF4G2P78344 907 aaKnown RBP eCLIP20.43■□□□□ 0.86
SYNE1-236ENST00000537750 ZBED9Q6R2W3 1325 aa20.42■□□□□ 0.86
SYNE1-236ENST00000537750 CNTLNQ9NXG0 1405 aa20.41■□□□□ 0.86
SYNE1-236ENST00000537750 PTPN23Q9H3S7 1636 aa20.41■□□□□ 0.86
SYNE1-236ENST00000537750 NAIPQ13075 1403 aa20.41■□□□□ 0.86
SYNE1-236ENST00000537750 FYCO1Q9BQS8 1478 aa20.39■□□□□ 0.85
SYNE1-236ENST00000537750 CASKIN1Q8WXD9 1431 aa20.38■□□□□ 0.85
SYNE1-236ENST00000537750 FGD5Q6ZNL6 1462 aa20.37■□□□□ 0.85
SYNE1-236ENST00000537750 RRP7BPQ9NSQ0 103 aa20.37■□□□□ 0.85
SYNE1-236ENST00000537750 MTUS2Q5JR59 1369 aa20.36■□□□□ 0.85
SYNE1-236ENST00000537750 NCOA2Q15596 1464 aa20.36■□□□□ 0.85
SYNE1-236ENST00000537750 CNGB1Q14028 1251 aaPredicted RBP20.36■□□□□ 0.85
SYNE1-236ENST00000537750 ANO8Q9HCE9 1232 aaPredicted RBP20.36■□□□□ 0.85
SYNE1-236ENST00000537750 CHIC2Q9UKJ5 165 aa20.36■□□□□ 0.85
SYNE1-236ENST00000537750 SENP3-EIF4A1A0A087X0R7 540 aa20.35■□□□□ 0.85
SYNE1-236ENST00000537750 AKNAQ7Z591 1439 aa20.34■□□□□ 0.85
SYNE1-236ENST00000537750 CCDC7Q96M83 1385 aa20.33■□□□□ 0.85
SYNE1-236ENST00000537750 L3MBTL2Q969R5 705 aa20.32■□□□□ 0.84
SYNE1-236ENST00000537750 IPO9Q96P70 1041 aaKnown RBP20.32■□□□□ 0.84
SYNE1-236ENST00000537750 FMN1Q68DA7 1419 aa20.32■□□□□ 0.84
SYNE1-236ENST00000537750 ANP32AP39687 249 aaKnown RBP20.31■□□□□ 0.84
SYNE1-236ENST00000537750 CCDC136Q96JN2 1154 aa20.31■□□□□ 0.84
SYNE1-236ENST00000537750 FOXD1Q16676 465 aa20.31■□□□□ 0.84
SYNE1-236ENST00000537750 RTL5Q5HYW3 569 aaPredicted RBP20.28■□□□□ 0.84
SYNE1-236ENST00000537750 ZBTB47Q9UFB7 747 aaPredicted RBP20.28■□□□□ 0.84
SYNE1-236ENST00000537750 NCOA1Q15788 1441 aa20.28■□□□□ 0.84
SYNE1-236ENST00000537750 DENND4BO75064 1496 aaPredicted RBP20.28■□□□□ 0.84
SYNE1-236ENST00000537750 CADPSQ9ULU8 1353 aa20.25■□□□□ 0.83
SYNE1-236ENST00000537750 MYOM3Q5VTT5 1437 aa20.24■□□□□ 0.83
SYNE1-236ENST00000537750 EFCAB5A4FU69 1503 aa20.24■□□□□ 0.83
SYNE1-236ENST00000537750 NBPF8Q3BBV2 869 aa20.24■□□□□ 0.83
SYNE1-236ENST00000537750 SALL2Q9Y467 1007 aaPredicted RBP20.24■□□□□ 0.83
SYNE1-236ENST00000537750 KIF7Q2M1P5 1343 aa20.23■□□□□ 0.83
SYNE1-236ENST00000537750 IL27Q8NEV9 243 aa20.23■□□□□ 0.83
SYNE1-236ENST00000537750 MPHOSPH9Q99550 1183 aa20.22■□□□□ 0.83
SYNE1-236ENST00000537750 PRDM2Q13029 1718 aa20.22■□□□□ 0.83
SYNE1-236ENST00000537750 SNAPC4Q5SXM2 1469 aa20.21■□□□□ 0.83
SYNE1-236ENST00000537750 NUDCQ9Y266 331 aa20.21■□□□□ 0.83
SYNE1-236ENST00000537750 SMG6Q86US8 1419 aaKnown RBP20.21■□□□□ 0.83
SYNE1-236ENST00000537750 RTN4Q9NQC3 1192 aaKnown RBP20.2■□□□□ 0.83
SYNE1-236ENST00000537750 NPM2Q86SE8 214 aaKnown RBP20.18■□□□□ 0.82
SYNE1-236ENST00000537750 RAD54L2Q9Y4B4 1467 aa20.18■□□□□ 0.82
SYNE1-236ENST00000537750 POLR3GLQ9BT43 218 aa20.17■□□□□ 0.82
SYNE1-236ENST00000537750 RNF123Q5XPI4 1314 aa20.17■□□□□ 0.82
SYNE1-236ENST00000537750 KDM6BO15054 1643 aa20.16■□□□□ 0.82
SYNE1-236ENST00000537750 LAS1LQ9Y4W2 734 aaKnown RBP20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms