RNA–Protein interactions for RNA: ENST00000537380.1

CIITA-203, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 1,062 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-203ENST00000537380 PRXQ9BXM0 1461 aa15.3■□□□□ 0.04
CIITA-203ENST00000537380 SHROOM2Q13796 1616 aa15.26■□□□□ 0.03
CIITA-203ENST00000537380 GOLGA3Q08378 1498 aa15.26■□□□□ 0.03
CIITA-203ENST00000537380 CYB5RLQ6IPT4 315 aa15.24■□□□□ 0.03
CIITA-203ENST00000537380 ARAP1Q96P48 1450 aa15.24■□□□□ 0.03
CIITA-203ENST00000537380 LOC105371045A0A1W2PR82 267 aa15.23■□□□□ 0.03
CIITA-203ENST00000537380 CARMIL1Q5VZK9 1371 aa15.23■□□□□ 0.03
CIITA-203ENST00000537380 TNIKQ9UKE5 1360 aa15.22■□□□□ 0.03
CIITA-203ENST00000537380 RAPGEF2Q9Y4G8 1499 aa15.18■□□□□ 0.02
CIITA-203ENST00000537380 ERCC6L2Q5T890 1561 aa15.17■□□□□ 0.02
CIITA-203ENST00000537380 KIAA0586Q9BVV6 1533 aa15.17■□□□□ 0.02
CIITA-203ENST00000537380 TRHP20396 242 aaPredicted RBP15.15■□□□□ 0.02
CIITA-203ENST00000537380 UBTFP17480 764 aaKnown RBP15.1■□□□□ 0.01
CIITA-203ENST00000537380 JPH4Q96JJ6 628 aa15.1■□□□□ 0.01
CIITA-203ENST00000537380 IQGAP2Q13576 1575 aa15.1■□□□□ 0.01
CIITA-203ENST00000537380 PRG4Q92954 1404 aaPredicted RBP15.09■□□□□ 0.01
CIITA-203ENST00000537380 CTTNBP2Q8WZ74 1663 aa15.07■□□□□ 0
CIITA-203ENST00000537380 CEP162Q5TB80 1403 aa15.04■□□□□ -0
CIITA-203ENST00000537380 UGGT2Q9NYU1 1516 aa15.02■□□□□ -0
CIITA-203ENST00000537380 DISP1Q96F81 1524 aa14.99□□□□□ -0.01
CIITA-203ENST00000537380 CLIP1P30622 1438 aa14.98□□□□□ -0.01
CIITA-203ENST00000537380 CARMIL2Q6F5E8 1435 aa14.97□□□□□ -0.01
CIITA-203ENST00000537380 KIAA0556O60303 1618 aa14.96□□□□□ -0.01
CIITA-203ENST00000537380 EHMT2Q96KQ7 1210 aa14.96□□□□□ -0.01
CIITA-203ENST00000537380 ADCY10Q96PN6 1610 aa14.94□□□□□ -0.02
CIITA-203ENST00000537380 EFCAB5A4FU69 1503 aa14.92□□□□□ -0.02
CIITA-203ENST00000537380 PTPRGP23470 1445 aa14.91□□□□□ -0.02
CIITA-203ENST00000537380 SAMD9Q5K651 1589 aa14.88□□□□□ -0.03
CIITA-203ENST00000537380 ARHGAP35Q9NRY4 1499 aa14.88□□□□□ -0.03
CIITA-203ENST00000537380 UHRF1BP1LA0JNW5 1464 aa14.87□□□□□ -0.03
CIITA-203ENST00000537380 VPS8Q8N3P4 1428 aa14.85□□□□□ -0.03
CIITA-203ENST00000537380 MAPKBP1O60336 1514 aa14.85□□□□□ -0.03
CIITA-203ENST00000537380 ABCC2Q92887 1545 aa14.84□□□□□ -0.03
CIITA-203ENST00000537380 NPM1P06748 294 aaKnown RBP eCLIP14.84□□□□□ -0.03
CIITA-203ENST00000537380 UACAQ9BZF9 1416 aa14.83□□□□□ -0.04
CIITA-203ENST00000537380 ABCA8O94911 1581 aa14.81□□□□□ -0.04
CIITA-203ENST00000537380 KIF13AQ9H1H9 1805 aa14.8□□□□□ -0.04
CIITA-203ENST00000537380 KDM5BQ9UGL1 1544 aa14.79□□□□□ -0.04
CIITA-203ENST00000537380 PLB1Q6P1J6 1458 aa14.77□□□□□ -0.04
CIITA-203ENST00000537380 FMN1Q68DA7 1419 aa14.77□□□□□ -0.04
CIITA-203ENST00000537380 ZCCHC11Q5TAX3 1644 aaKnown RBP14.76□□□□□ -0.05
CIITA-203ENST00000537380 DIP2BQ9P265 1576 aa14.76□□□□□ -0.05
CIITA-203ENST00000537380 ABCC10Q5T3U5 1492 aa14.76□□□□□ -0.05
CIITA-203ENST00000537380 TTBK1Q5TCY1 1321 aaPredicted RBP14.75□□□□□ -0.05
CIITA-203ENST00000537380 MAP3K1Q13233 1512 aa14.74□□□□□ -0.05
CIITA-203ENST00000537380 AEBP2Q6ZN18 517 aaPredicted RBP14.73□□□□□ -0.05
CIITA-203ENST00000537380 FYCO1Q9BQS8 1478 aa14.71□□□□□ -0.05
CIITA-203ENST00000537380 RAPGEF6Q8TEU7 1601 aa14.71□□□□□ -0.05
CIITA-203ENST00000537380 FHOD3Q2V2M9 1422 aa14.71□□□□□ -0.05
CIITA-203ENST00000537380 ASXL2Q76L83 1435 aa14.71□□□□□ -0.05
CIITA-203ENST00000537380 CASKIN1Q8WXD9 1431 aa14.71□□□□□ -0.05
CIITA-203ENST00000537380 RANGAP1P46060 587 aaPredicted RBP14.7□□□□□ -0.06
CIITA-203ENST00000537380 P3H3Q8IVL6 736 aa14.69□□□□□ -0.06
CIITA-203ENST00000537380 GLI2P10070 1586 aa14.68□□□□□ -0.06
CIITA-203ENST00000537380 APLP2Q06481 763 aa14.66□□□□□ -0.06
CIITA-203ENST00000537380 WDR7Q9Y4E6 1490 aa14.65□□□□□ -0.06
CIITA-203ENST00000537380 FAM69CQ0P6D2 419 aa14.65□□□□□ -0.06
CIITA-203ENST00000537380 ATP10BO94823 1461 aa14.64□□□□□ -0.07
CIITA-203ENST00000537380 NUP153P49790 1475 aaKnown RBP14.64□□□□□ -0.07
CIITA-203ENST00000537380 EPRSP07814 1512 aaKnown RBP14.64□□□□□ -0.07
CIITA-203ENST00000537380 PCF11O94913 1555 aaKnown RBP14.63□□□□□ -0.07
CIITA-203ENST00000537380 MAP3K4Q9Y6R4 1608 aa14.62□□□□□ -0.07
CIITA-203ENST00000537380 PPRC1Q5VV67 1664 aaKnown RBP14.61□□□□□ -0.07
CIITA-203ENST00000537380 CCDC18Q5T9S5 1454 aa14.6□□□□□ -0.07
CIITA-203ENST00000537380 TIAM1Q13009 1591 aa14.6□□□□□ -0.07
CIITA-203ENST00000537380 HECW1Q76N89 1606 aa14.59□□□□□ -0.07
CIITA-203ENST00000537380 TSPOAP1O95153 1857 aa14.59□□□□□ -0.07
CIITA-203ENST00000537380 CFAP43Q8NDM7 1665 aa14.58□□□□□ -0.07
CIITA-203ENST00000537380 TRIM26Q12899 539 aaPredicted RBP14.56□□□□□ -0.08
CIITA-203ENST00000537380 LRRC9Q6ZRR7 1453 aa14.54□□□□□ -0.08
CIITA-203ENST00000537380 LRRIQ1Q96JM4 1722 aa14.53□□□□□ -0.08
CIITA-203ENST00000537380 ABCA9Q8IUA7 1624 aa14.53□□□□□ -0.08
CIITA-203ENST00000537380 CDK13Q14004 1512 aaKnown RBP14.53□□□□□ -0.08
CIITA-203ENST00000537380 ARID3CA6NKF2 412 aa14.51□□□□□ -0.09
CIITA-203ENST00000537380 MAGI3Q5TCQ9 1506 aa14.51□□□□□ -0.09
CIITA-203ENST00000537380 TEX14Q8IWB6 1497 aa14.5□□□□□ -0.09
CIITA-203ENST00000537380 KDM6BO15054 1643 aa14.49□□□□□ -0.09
CIITA-203ENST00000537380 KANK4Q5T7N3 995 aaPredicted RBP14.48□□□□□ -0.09
CIITA-203ENST00000537380 CDK11AQ9UQ88 783 aaPredicted RBP14.48□□□□□ -0.09
CIITA-203ENST00000537380 CD109Q6YHK3 1445 aa14.48□□□□□ -0.09
CIITA-203ENST00000537380 EHBP1L1Q8N3D4 1523 aa14.46□□□□□ -0.09
CIITA-203ENST00000537380 KCNH8Q96L42 1107 aa14.46□□□□□ -0.09
CIITA-203ENST00000537380 ATP1B4Q9UN42 357 aaPredicted RBP14.45□□□□□ -0.1
CIITA-203ENST00000537380 MTUS2Q5JR59 1369 aa14.45□□□□□ -0.1
CIITA-203ENST00000537380 PLEKHD1A6NEE1 506 aa14.44□□□□□ -0.1
CIITA-203ENST00000537380 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.44□□□□□ -0.1
CIITA-203ENST00000537380 HNRNPUL2Q1KMD3 747 aaKnown RBP14.44□□□□□ -0.1
CIITA-203ENST00000537380 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.44□□□□□ -0.1
CIITA-203ENST00000537380 TTC37Q6PGP7 1564 aa14.43□□□□□ -0.1
CIITA-203ENST00000537380 COL17A1Q9UMD9 1497 aaPredicted RBP14.42□□□□□ -0.1
CIITA-203ENST00000537380 TROQ12816 1431 aaPredicted RBP14.41□□□□□ -0.1
CIITA-203ENST00000537380 RRBP1Q9P2E9 1410 aaKnown RBP14.41□□□□□ -0.1
CIITA-203ENST00000537380 SUPT6HQ7KZ85 1726 aaKnown RBP14.41□□□□□ -0.1
CIITA-203ENST00000537380 KIF14Q15058 1648 aa14.41□□□□□ -0.1
CIITA-203ENST00000537380 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.4□□□□□ -0.1
CIITA-203ENST00000537380 PPARGC1BQ86YN6 1023 aaKnown RBP14.4□□□□□ -0.1
CIITA-203ENST00000537380 NEO1Q92859 1461 aa14.39□□□□□ -0.11
CIITA-203ENST00000537380 ARAP3Q8WWN8 1544 aa14.39□□□□□ -0.11
CIITA-203ENST00000537380 CFAP74Q9C0B2 1584 aa14.38□□□□□ -0.11
CIITA-203ENST00000537380 PHLDB1Q86UU1 1377 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms