RNA–Protein interactions for RNA: ENST00000536780.6

MIR9-3HG-201, Transcript of MIR9-3 host gene, humanhuman

TSL 3 BASIC

Gene MIR9-3HG, Length 4,778 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MIR9-3HG-201ENST00000536780 CHGAP10645 457 aaKnown RBP19.03■□□□□ 0.64
MIR9-3HG-201ENST00000536780 TDRD9Q8NDG6 1382 aaKnown RBP19.02■□□□□ 0.64
MIR9-3HG-201ENST00000536780 STAG3Q9UJ98 1225 aa19.02■□□□□ 0.64
MIR9-3HG-201ENST00000536780 CCNB3Q8WWL7 1395 aa19■□□□□ 0.63
MIR9-3HG-201ENST00000536780 CLSPNQ9HAW4 1339 aa19■□□□□ 0.63
MIR9-3HG-201ENST00000536780 RAPGEF2Q9Y4G8 1499 aa18.97■□□□□ 0.63
MIR9-3HG-201ENST00000536780 CARMIL2Q6F5E8 1435 aa18.97■□□□□ 0.63
MIR9-3HG-201ENST00000536780 FMN1Q68DA7 1419 aa18.97■□□□□ 0.63
MIR9-3HG-201ENST00000536780 FANCD2Q9BXW9 1451 aa18.97■□□□□ 0.63
MIR9-3HG-201ENST00000536780 NEFMP07197 916 aa18.95■□□□□ 0.62
MIR9-3HG-201ENST00000536780 DDX10Q13206 875 aaKnown RBP18.94■□□□□ 0.62
MIR9-3HG-201ENST00000536780 GTF3C3Q9Y5Q9 886 aa18.91■□□□□ 0.62
MIR9-3HG-201ENST00000536780 EIF4G2P78344 907 aaKnown RBP eCLIP18.89■□□□□ 0.62
MIR9-3HG-201ENST00000536780 KDM2AQ9Y2K7 1162 aa18.86■□□□□ 0.61
MIR9-3HG-201ENST00000536780 ARHGAP35Q9NRY4 1499 aa18.86■□□□□ 0.61
MIR9-3HG-201ENST00000536780 MYT1Q01538 1121 aa18.81■□□□□ 0.6
MIR9-3HG-201ENST00000536780 TIMELESSQ9UNS1 1208 aa18.81■□□□□ 0.6
MIR9-3HG-201ENST00000536780 KANK4Q5T7N3 995 aaPredicted RBP18.79■□□□□ 0.6
MIR9-3HG-201ENST00000536780 CANXP27824 592 aaKnown RBP18.75■□□□□ 0.59
MIR9-3HG-201ENST00000536780 RUSC2Q8N2Y8 1516 aa18.75■□□□□ 0.59
MIR9-3HG-201ENST00000536780 SETD5Q9C0A6 1442 aa18.75■□□□□ 0.59
MIR9-3HG-201ENST00000536780 FGD5Q6ZNL6 1462 aa18.74■□□□□ 0.59
MIR9-3HG-201ENST00000536780 TMC1Q8TDI8 760 aa18.74■□□□□ 0.59
MIR9-3HG-201ENST00000536780 HNRNPUQ00839 825 aaKnown RBP eCLIP18.73■□□□□ 0.59
MIR9-3HG-201ENST00000536780 HMGXB3Q12766 1538 aa18.73■□□□□ 0.59
MIR9-3HG-201ENST00000536780 ZBTB47Q9UFB7 747 aaPredicted RBP18.71■□□□□ 0.59
MIR9-3HG-201ENST00000536780 FHOD3Q2V2M9 1422 aa18.71■□□□□ 0.59
MIR9-3HG-201ENST00000536780 CFTRP13569 1480 aa18.71■□□□□ 0.59
MIR9-3HG-201ENST00000536780 IGF1RP08069 1367 aa18.7■□□□□ 0.58
MIR9-3HG-201ENST00000536780 FAM9BQ8IZU0 186 aa18.69■□□□□ 0.58
MIR9-3HG-201ENST00000536780 RGL3Q3MIN7 710 aa18.69■□□□□ 0.58
MIR9-3HG-201ENST00000536780 CDCA8Q53HL2 280 aa18.68■□□□□ 0.58
MIR9-3HG-201ENST00000536780 JPH4Q96JJ6 628 aa18.68■□□□□ 0.58
MIR9-3HG-201ENST00000536780 MRS2Q9HD23 443 aa18.68■□□□□ 0.58
MIR9-3HG-201ENST00000536780 GAPVD1Q14C86 1478 aa18.67■□□□□ 0.58
MIR9-3HG-201ENST00000536780 SIN3AQ96ST3 1273 aa18.66■□□□□ 0.58
MIR9-3HG-201ENST00000536780 MIER1Q8N108 512 aa18.65■□□□□ 0.58
MIR9-3HG-201ENST00000536780 PLPPR3Q6T4P5 718 aa18.65■□□□□ 0.58
MIR9-3HG-201ENST00000536780 HIRIP3Q9BW71 556 aaPredicted RBP18.64■□□□□ 0.57
MIR9-3HG-201ENST00000536780 CCDC18Q5T9S5 1454 aa18.64■□□□□ 0.57
MIR9-3HG-201ENST00000536780 KANK1Q14678 1352 aa18.64■□□□□ 0.57
MIR9-3HG-201ENST00000536780 PPP1R15AO75807 674 aaPredicted RBP18.63■□□□□ 0.57
MIR9-3HG-201ENST00000536780 EFCAB2Q5VUJ9 269 aa18.63■□□□□ 0.57
MIR9-3HG-201ENST00000536780 CARD11Q9BXL7 1154 aa18.62■□□□□ 0.57
MIR9-3HG-201ENST00000536780 WDR43Q15061 677 aaKnown RBP eCLIP18.62■□□□□ 0.57
MIR9-3HG-201ENST00000536780 RSPH4AQ5TD94 716 aa18.6■□□□□ 0.57
MIR9-3HG-201ENST00000536780 ANKRD30AQ9BXX3 1397 aa18.59■□□□□ 0.57
MIR9-3HG-201ENST00000536780 SLC24A1O60721 1099 aa18.58■□□□□ 0.57
MIR9-3HG-201ENST00000536780 RAD54L2Q9Y4B4 1467 aa18.58■□□□□ 0.57
MIR9-3HG-201ENST00000536780 BICRAQ9NZM4 1560 aa18.57■□□□□ 0.56
MIR9-3HG-201ENST00000536780 RAB3GAP2Q9H2M9 1393 aa18.57■□□□□ 0.56
MIR9-3HG-201ENST00000536780 ARID4BQ4LE39 1312 aaPredicted RBP18.56■□□□□ 0.56
MIR9-3HG-201ENST00000536780 CC2D2AQ9P2K1 1620 aa18.56■□□□□ 0.56
MIR9-3HG-201ENST00000536780 FKBP8Q14318 412 aa18.53■□□□□ 0.56
MIR9-3HG-201ENST00000536780 RTL5Q5HYW3 569 aaPredicted RBP18.53■□□□□ 0.56
MIR9-3HG-201ENST00000536780 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.51■□□□□ 0.55
MIR9-3HG-201ENST00000536780 ERICH3Q5RHP9 1530 aa18.5■□□□□ 0.55
MIR9-3HG-201ENST00000536780 PTPRGP23470 1445 aa18.5■□□□□ 0.55
MIR9-3HG-201ENST00000536780 PKD2Q13563 968 aa18.5■□□□□ 0.55
MIR9-3HG-201ENST00000536780 KIF21BO75037 1637 aa18.49■□□□□ 0.55
MIR9-3HG-201ENST00000536780 SYNJ1O43426 1573 aa18.48■□□□□ 0.55
MIR9-3HG-201ENST00000536780 KNSTRNQ9Y448 316 aa18.48■□□□□ 0.55
MIR9-3HG-201ENST00000536780 MPHOSPH9Q99550 1183 aa18.48■□□□□ 0.55
MIR9-3HG-201ENST00000536780 DCAF11Q8TEB1 546 aa18.47■□□□□ 0.55
MIR9-3HG-201ENST00000536780 TOP2BQ02880 1626 aa18.46■□□□□ 0.55
MIR9-3HG-201ENST00000536780 GRIN2BQ13224 1484 aa18.46■□□□□ 0.55
MIR9-3HG-201ENST00000536780 NUP155O75694 1391 aa18.46■□□□□ 0.55
MIR9-3HG-201ENST00000536780 SALL2Q9Y467 1007 aaPredicted RBP18.45■□□□□ 0.54
MIR9-3HG-201ENST00000536780 MRC2Q9UBG0 1479 aa18.43■□□□□ 0.54
MIR9-3HG-201ENST00000536780 CFAP53Q96M91 514 aa18.42■□□□□ 0.54
MIR9-3HG-201ENST00000536780 AQRO60306 1485 aaKnown RBP eCLIP18.42■□□□□ 0.54
MIR9-3HG-201ENST00000536780 HDGFP51858 240 aaKnown RBP18.42■□□□□ 0.54
MIR9-3HG-201ENST00000536780 TOPBP1Q92547 1522 aa18.41■□□□□ 0.54
MIR9-3HG-201ENST00000536780 NESP48681 1621 aa18.4■□□□□ 0.54
MIR9-3HG-201ENST00000536780 TMF1P82094 1093 aa18.4■□□□□ 0.54
MIR9-3HG-201ENST00000536780 PEG3Q9GZU2 1588 aa18.39■□□□□ 0.53
MIR9-3HG-201ENST00000536780 SPAG9O60271 1321 aaKnown RBP18.38■□□□□ 0.53
MIR9-3HG-201ENST00000536780 IFT140Q96RY7 1462 aa18.38■□□□□ 0.53
MIR9-3HG-201ENST00000536780 CUX1P39880 1505 aa18.38■□□□□ 0.53
MIR9-3HG-201ENST00000536780 HNRNPMP52272 730 aaKnown RBP eCLIP18.38■□□□□ 0.53
MIR9-3HG-201ENST00000536780 PRXQ9BXM0 1461 aa18.38■□□□□ 0.53
MIR9-3HG-201ENST00000536780 POGKQ9P215 609 aa18.38■□□□□ 0.53
MIR9-3HG-201ENST00000536780 GGT6Q6P531 493 aa18.37■□□□□ 0.53
MIR9-3HG-201ENST00000536780 ANP32AP39687 249 aaKnown RBP18.36■□□□□ 0.53
MIR9-3HG-201ENST00000536780 OSCARQ8IYS5 282 aa18.36■□□□□ 0.53
MIR9-3HG-201ENST00000536780 CCDC136Q96JN2 1154 aa18.35■□□□□ 0.53
MIR9-3HG-201ENST00000536780 POLA1P09884 1462 aaPredicted RBP18.34■□□□□ 0.53
MIR9-3HG-201ENST00000536780 CASKIN1Q8WXD9 1431 aa18.34■□□□□ 0.53
MIR9-3HG-201ENST00000536780 DNMBPQ6XZF7 1577 aa18.34■□□□□ 0.53
MIR9-3HG-201ENST00000536780 FOXD1Q16676 465 aa18.32■□□□□ 0.52
MIR9-3HG-201ENST00000536780 HSPA5P11021 654 aaKnown RBP18.32■□□□□ 0.52
MIR9-3HG-201ENST00000536780 C14orf37Q86TY3 774 aa18.31■□□□□ 0.52
MIR9-3HG-201ENST00000536780 SENP3Q9H4L4 574 aaPredicted RBP18.31■□□□□ 0.52
MIR9-3HG-201ENST00000536780 KIF3BO15066 747 aa18.3■□□□□ 0.52
MIR9-3HG-201ENST00000536780 TRHP20396 242 aaPredicted RBP18.3■□□□□ 0.52
MIR9-3HG-201ENST00000536780 LAMC3Q9Y6N6 1575 aa18.3■□□□□ 0.52
MIR9-3HG-201ENST00000536780 CCER2I3L3R5 266 aa18.3■□□□□ 0.52
MIR9-3HG-201ENST00000536780 EFCAB5A4FU69 1503 aa18.29■□□□□ 0.52
MIR9-3HG-201ENST00000536780 DHX57Q6P158 1386 aaKnown RBP18.29■□□□□ 0.52
MIR9-3HG-201ENST00000536780 MYOM3Q5VTT5 1437 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms