RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 MROH2BQ7Z745 1585 aa5.85□□□□□ -1.47
MCF2-210ENST00000536274 DSG3P32926 999 aa5.84□□□□□ -1.47
MCF2-210ENST00000536274 LOC105371045A0A1W2PR82 267 aa5.83□□□□□ -1.48
MCF2-210ENST00000536274 TRHP20396 242 aaPredicted RBP5.83□□□□□ -1.48
MCF2-210ENST00000536274 RBM42Q9BTD8 480 aaKnown RBP5.83□□□□□ -1.48
MCF2-210ENST00000536274 TTBK1Q5TCY1 1321 aaPredicted RBP5.82□□□□□ -1.48
MCF2-210ENST00000536274 IFT140Q96RY7 1462 aa5.81□□□□□ -1.48
MCF2-210ENST00000536274 FANCD2Q9BXW9 1451 aa5.8□□□□□ -1.48
MCF2-210ENST00000536274 SPINK5Q9NQ38 1064 aaPredicted RBP5.79□□□□□ -1.48
MCF2-210ENST00000536274 RSF1Q96T23 1441 aaPredicted RBP5.79□□□□□ -1.48
MCF2-210ENST00000536274 RIMBP3CA6NJZ7 1639 aa5.78□□□□□ -1.48
MCF2-210ENST00000536274 RIMBP3BA6NNM3 1639 aa5.78□□□□□ -1.48
MCF2-210ENST00000536274 RIMBP3Q9UFD9 1639 aa5.78□□□□□ -1.48
MCF2-210ENST00000536274 ANP32EQ9BTT0 268 aa5.78□□□□□ -1.48
MCF2-210ENST00000536274 DNMBPQ6XZF7 1577 aa5.78□□□□□ -1.48
MCF2-210ENST00000536274 TRIM26Q12899 539 aaPredicted RBP5.77□□□□□ -1.49
MCF2-210ENST00000536274 WIZO95785 1651 aa5.77□□□□□ -1.49
MCF2-210ENST00000536274 URB2Q14146 1524 aaKnown RBP5.76□□□□□ -1.49
MCF2-210ENST00000536274 TARBP1Q13395 1621 aaKnown RBP5.75□□□□□ -1.49
MCF2-210ENST00000536274 ANO8Q9HCE9 1232 aaPredicted RBP5.75□□□□□ -1.49
MCF2-210ENST00000536274 EIF4G3O43432 1585 aaKnown RBP5.74□□□□□ -1.49
MCF2-210ENST00000536274 ZEB1P37275 1124 aaPredicted RBP5.74□□□□□ -1.49
MCF2-210ENST00000536274 AMER1Q5JTC6 1135 aaPredicted RBP5.73□□□□□ -1.49
MCF2-210ENST00000536274 CLASP1Q7Z460 1538 aa5.73□□□□□ -1.49
MCF2-210ENST00000536274 DIEXFQ68CQ4 756 aaKnown RBP5.72□□□□□ -1.49
MCF2-210ENST00000536274 ARHGEF11O15085 1522 aa5.72□□□□□ -1.49
MCF2-210ENST00000536274 CHD1O14646 1710 aa5.71□□□□□ -1.5
MCF2-210ENST00000536274 TOPBP1Q92547 1522 aa5.71□□□□□ -1.5
MCF2-210ENST00000536274 ABCB7O75027 752 aa5.7□□□□□ -1.5
MCF2-210ENST00000536274 FBLN2P98095 1184 aa5.69□□□□□ -1.5
MCF2-210ENST00000536274 CCDC136Q96JN2 1154 aa5.69□□□□□ -1.5
MCF2-210ENST00000536274 MAGI1Q96QZ7 1491 aaPredicted RBP5.69□□□□□ -1.5
MCF2-210ENST00000536274 SYNJ1O43426 1573 aa5.69□□□□□ -1.5
MCF2-210ENST00000536274 OSCARQ8IYS5 282 aa5.69□□□□□ -1.5
MCF2-210ENST00000536274 ERICH6Q7L0X2 663 aa5.68□□□□□ -1.5
MCF2-210ENST00000536274 ZBTB22O15209 634 aa5.68□□□□□ -1.5
MCF2-210ENST00000536274 POLA2Q14181 598 aa5.68□□□□□ -1.5
MCF2-210ENST00000536274 TSHZ2Q9NRE2 1034 aa5.67□□□□□ -1.5
MCF2-210ENST00000536274 PBRM1Q86U86 1689 aa5.65□□□□□ -1.5
MCF2-210ENST00000536274 SHROOM2Q13796 1616 aa5.65□□□□□ -1.51
MCF2-210ENST00000536274 ARAP1Q96P48 1450 aa5.64□□□□□ -1.51
MCF2-210ENST00000536274 ABCA5Q8WWZ7 1642 aa5.64□□□□□ -1.51
MCF2-210ENST00000536274 AKT1S1Q96B36 256 aa5.63□□□□□ -1.51
MCF2-210ENST00000536274 SALL2Q9Y467 1007 aaPredicted RBP5.62□□□□□ -1.51
MCF2-210ENST00000536274 CCDC88BA6NC98 1476 aa5.62□□□□□ -1.51
MCF2-210ENST00000536274 BCANQ96GW7 911 aa5.62□□□□□ -1.51
MCF2-210ENST00000536274 POLA1P09884 1462 aaPredicted RBP5.61□□□□□ -1.51
MCF2-210ENST00000536274 SYNJ2O15056 1496 aa5.61□□□□□ -1.51
MCF2-210ENST00000536274 MIER1Q8N108 512 aa5.61□□□□□ -1.51
MCF2-210ENST00000536274 GRIN2BQ13224 1484 aa5.6□□□□□ -1.51
MCF2-210ENST00000536274 CCER1Q8TC90 406 aaPredicted RBP5.6□□□□□ -1.51
MCF2-210ENST00000536274 SUPT16HQ9Y5B9 1047 aaKnown RBP5.6□□□□□ -1.51
MCF2-210ENST00000536274 BIVM-ERCC5R4GMW8 1640 aa5.6□□□□□ -1.51
MCF2-210ENST00000536274 ZNF608Q9ULD9 1512 aaPredicted RBP5.6□□□□□ -1.51
MCF2-210ENST00000536274 ABCA10Q8WWZ4 1543 aa5.59□□□□□ -1.51
MCF2-210ENST00000536274 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.59□□□□□ -1.51
MCF2-210ENST00000536274 ADAMTS12P58397 1594 aa5.58□□□□□ -1.52
MCF2-210ENST00000536274 SPDYE2BA6NHP3 402 aa5.57□□□□□ -1.52
MCF2-210ENST00000536274 SPDYE6P0CI01 402 aa5.57□□□□□ -1.52
MCF2-210ENST00000536274 SPDYE2Q495Y8 402 aa5.57□□□□□ -1.52
MCF2-210ENST00000536274 ERICH3Q5RHP9 1530 aa5.57□□□□□ -1.52
MCF2-210ENST00000536274 PLEKHG5O94827 1062 aa5.57□□□□□ -1.52
MCF2-210ENST00000536274 NUP160Q12769 1436 aa5.56□□□□□ -1.52
MCF2-210ENST00000536274 MAPKBP1O60336 1514 aa5.56□□□□□ -1.52
MCF2-210ENST00000536274 SNAPC4Q5SXM2 1469 aa5.55□□□□□ -1.52
MCF2-210ENST00000536274 CUX1P39880 1505 aa5.54□□□□□ -1.52
MCF2-210ENST00000536274 KIF13AQ9H1H9 1805 aa5.54□□□□□ -1.52
MCF2-210ENST00000536274 FGD5Q6ZNL6 1462 aa5.54□□□□□ -1.52
MCF2-210ENST00000536274 TOP2BQ02880 1626 aa5.53□□□□□ -1.52
MCF2-210ENST00000536274 TRIM41Q8WV44 630 aa5.53□□□□□ -1.52
MCF2-210ENST00000536274 SOGA1O94964 1423 aa5.52□□□□□ -1.53
MCF2-210ENST00000536274 GRIN2AQ12879 1464 aa5.52□□□□□ -1.53
MCF2-210ENST00000536274 POTEHQ6S545 545 aa5.51□□□□□ -1.53
MCF2-210ENST00000536274 ITGAEP38570 1179 aa5.51□□□□□ -1.53
MCF2-210ENST00000536274 CEP170Q5SW79 1584 aa5.51□□□□□ -1.53
MCF2-210ENST00000536274 GAPVD1Q14C86 1478 aa5.51□□□□□ -1.53
MCF2-210ENST00000536274 CUL7Q14999 1698 aa5.51□□□□□ -1.53
MCF2-210ENST00000536274 GLI2P10070 1586 aa5.51□□□□□ -1.53
MCF2-210ENST00000536274 ATF5Q9Y2D1 282 aaPredicted RBP5.5□□□□□ -1.53
MCF2-210ENST00000536274 RBM19Q9Y4C8 960 aaKnown RBP5.5□□□□□ -1.53
MCF2-210ENST00000536274 RUSC2Q8N2Y8 1516 aa5.5□□□□□ -1.53
MCF2-210ENST00000536274 FHAD1B1AJZ9 1412 aa5.5□□□□□ -1.53
MCF2-210ENST00000536274 DEKP35659 375 aaKnown RBP5.49□□□□□ -1.53
MCF2-210ENST00000536274 AQRO60306 1485 aaKnown RBP eCLIP5.49□□□□□ -1.53
MCF2-210ENST00000536274 ZNF316A6NFI3 1004 aaPredicted RBP5.48□□□□□ -1.53
MCF2-210ENST00000536274 DIP2BQ9P265 1576 aa5.48□□□□□ -1.53
MCF2-210ENST00000536274 SPDYE1Q8NFV5 336 aaPredicted RBP5.47□□□□□ -1.53
MCF2-210ENST00000536274 CHRDL2Q6WN34 429 aa5.47□□□□□ -1.53
MCF2-210ENST00000536274 IL27Q8NEV9 243 aa5.47□□□□□ -1.53
MCF2-210ENST00000536274 EIF5BO60841 1220 aaKnown RBP5.46□□□□□ -1.54
MCF2-210ENST00000536274 UBE2Q2Q8WVN8 375 aa5.46□□□□□ -1.54
MCF2-210ENST00000536274 ABCC10Q5T3U5 1492 aa5.46□□□□□ -1.54
MCF2-210ENST00000536274 RAD54L2Q9Y4B4 1467 aa5.46□□□□□ -1.54
MCF2-210ENST00000536274 UHRF1BP1LA0JNW5 1464 aa5.45□□□□□ -1.54
MCF2-210ENST00000536274 REM2Q8IYK8 340 aaPredicted RBP5.45□□□□□ -1.54
MCF2-210ENST00000536274 WRNQ14191 1432 aaPredicted RBP eCLIP5.45□□□□□ -1.54
MCF2-210ENST00000536274 NBR1Q14596 966 aa5.44□□□□□ -1.54
MCF2-210ENST00000536274 KIAA0586Q9BVV6 1533 aa5.44□□□□□ -1.54
MCF2-210ENST00000536274 FKBP8Q14318 412 aa5.43□□□□□ -1.54
MCF2-210ENST00000536274 ZNF692Q9BU19 519 aaPredicted RBP5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms