RNA–Protein interactions for RNA: ENST00000533499.1

NXF1-216, Transcript of nuclear RNA export factor 1, humanhuman

TSL 5

Gene NXF1, Length 936 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NXF1-216ENST00000533499 GOLGA3Q08378 1498 aa28.5■■■□□ 2.15
NXF1-216ENST00000533499 KIAA0586Q9BVV6 1533 aa28.47■■■□□ 2.15
NXF1-216ENST00000533499 CTTNBP2Q8WZ74 1663 aa28.45■■■□□ 2.15
NXF1-216ENST00000533499 DNAJC5Q9H3Z4 198 aa28.44■■■□□ 2.14
NXF1-216ENST00000533499 RANGAP1P46060 587 aaPredicted RBP28.43■■■□□ 2.14
NXF1-216ENST00000533499 IQGAP2Q13576 1575 aa28.41■■■□□ 2.14
NXF1-216ENST00000533499 JPH4Q96JJ6 628 aa28.41■■■□□ 2.14
NXF1-216ENST00000533499 LOC105371045A0A1W2PR82 267 aa28.36■■■□□ 2.13
NXF1-216ENST00000533499 PRG4Q92954 1404 aaPredicted RBP28.33■■■□□ 2.13
NXF1-216ENST00000533499 SHROOM2Q13796 1616 aa28.31■■■□□ 2.12
NXF1-216ENST00000533499 ARHGEF11O15085 1522 aa28.28■■■□□ 2.12
NXF1-216ENST00000533499 TTBK1Q5TCY1 1321 aaPredicted RBP28.27■■■□□ 2.12
NXF1-216ENST00000533499 ERCC6L2Q5T890 1561 aa28.26■■■□□ 2.11
NXF1-216ENST00000533499 RIMBP3CA6NJZ7 1639 aa28.25■■■□□ 2.11
NXF1-216ENST00000533499 RIMBP3BA6NNM3 1639 aa28.25■■■□□ 2.11
NXF1-216ENST00000533499 RIMBP3Q9UFD9 1639 aa28.25■■■□□ 2.11
NXF1-216ENST00000533499 CARMIL2Q6F5E8 1435 aa28.22■■■□□ 2.11
NXF1-216ENST00000533499 UGGT2Q9NYU1 1516 aa28.22■■■□□ 2.11
NXF1-216ENST00000533499 P3H3Q8IVL6 736 aa28.21■■■□□ 2.11
NXF1-216ENST00000533499 TNIKQ9UKE5 1360 aa28.19■■■□□ 2.1
NXF1-216ENST00000533499 DISP1Q96F81 1524 aa28.14■■■□□ 2.1
NXF1-216ENST00000533499 KIAA0556O60303 1618 aa28.13■■■□□ 2.09
NXF1-216ENST00000533499 CYB5RLQ6IPT4 315 aa28.12■■■□□ 2.09
NXF1-216ENST00000533499 ARAP1Q96P48 1450 aa28.08■■■□□ 2.09
NXF1-216ENST00000533499 PTPRGP23470 1445 aa28.05■■■□□ 2.08
NXF1-216ENST00000533499 SAMD9Q5K651 1589 aa28.05■■■□□ 2.08
NXF1-216ENST00000533499 EFCAB5A4FU69 1503 aa28.03■■■□□ 2.08
NXF1-216ENST00000533499 CLIP1P30622 1438 aa28.03■■■□□ 2.08
NXF1-216ENST00000533499 FHOD3Q2V2M9 1422 aa28.02■■■□□ 2.08
NXF1-216ENST00000533499 CEP162Q5TB80 1403 aa28.01■■■□□ 2.07
NXF1-216ENST00000533499 ARHGAP35Q9NRY4 1499 aa27.99■■■□□ 2.07
NXF1-216ENST00000533499 ATP1B4Q9UN42 357 aaPredicted RBP27.86■■■□□ 2.05
NXF1-216ENST00000533499 UACAQ9BZF9 1416 aa27.84■■■□□ 2.05
NXF1-216ENST00000533499 PLB1Q6P1J6 1458 aa27.83■■■□□ 2.05
NXF1-216ENST00000533499 ARID3CA6NKF2 412 aa27.82■■■□□ 2.04
NXF1-216ENST00000533499 FMN1Q68DA7 1419 aa27.8■■■□□ 2.04
NXF1-216ENST00000533499 NPM1P06748 294 aaKnown RBP eCLIP27.79■■■□□ 2.04
NXF1-216ENST00000533499 ADCY10Q96PN6 1610 aa27.78■■■□□ 2.04
NXF1-216ENST00000533499 ABCA8O94911 1581 aa27.76■■■□□ 2.03
NXF1-216ENST00000533499 ABCC2Q92887 1545 aa27.76■■■□□ 2.03
NXF1-216ENST00000533499 RAPGEF6Q8TEU7 1601 aa27.75■■■□□ 2.03
NXF1-216ENST00000533499 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.72■■■□□ 2.03
NXF1-216ENST00000533499 HNRNPUL2Q1KMD3 747 aaKnown RBP27.72■■■□□ 2.03
NXF1-216ENST00000533499 UHRF1BP1LA0JNW5 1464 aa27.71■■■□□ 2.03
NXF1-216ENST00000533499 PCF11O94913 1555 aaKnown RBP27.66■■■□□ 2.02
NXF1-216ENST00000533499 HECW1Q76N89 1606 aa27.63■■■□□ 2.01
NXF1-216ENST00000533499 NUP153P49790 1475 aaKnown RBP27.63■■■□□ 2.01
NXF1-216ENST00000533499 CASKIN1Q8WXD9 1431 aa27.62■■■□□ 2.01
NXF1-216ENST00000533499 ZCCHC11Q5TAX3 1644 aaKnown RBP27.61■■■□□ 2.01
NXF1-216ENST00000533499 VPS8Q8N3P4 1428 aa27.6■■■□□ 2.01
NXF1-216ENST00000533499 KDM5BQ9UGL1 1544 aa27.59■■■□□ 2.01
NXF1-216ENST00000533499 FYCO1Q9BQS8 1478 aa27.57■■■□□ 2
NXF1-216ENST00000533499 ATP10BO94823 1461 aa27.57■■■□□ 2
NXF1-216ENST00000533499 CDK13Q14004 1512 aaKnown RBP27.55■■■□□ 2
NXF1-216ENST00000533499 EPRSP07814 1512 aaKnown RBP27.53■■■□□ 2
NXF1-216ENST00000533499 LRRIQ1Q96JM4 1722 aa27.5■■□□□ 1.99
NXF1-216ENST00000533499 ASXL2Q76L83 1435 aa27.5■■□□□ 1.99
NXF1-216ENST00000533499 TRHP20396 242 aaPredicted RBP27.48■■□□□ 1.99
NXF1-216ENST00000533499 KCNH8Q96L42 1107 aa27.47■■□□□ 1.99
NXF1-216ENST00000533499 CCDC18Q5T9S5 1454 aa27.46■■□□□ 1.99
NXF1-216ENST00000533499 PLEKHD1A6NEE1 506 aa27.46■■□□□ 1.99
NXF1-216ENST00000533499 APLP2Q06481 763 aa27.46■■□□□ 1.99
NXF1-216ENST00000533499 MAPKBP1O60336 1514 aa27.46■■□□□ 1.99
NXF1-216ENST00000533499 CDK11AQ9UQ88 783 aaPredicted RBP27.45■■□□□ 1.98
NXF1-216ENST00000533499 WDR7Q9Y4E6 1490 aa27.41■■□□□ 1.98
NXF1-216ENST00000533499 FAM69CQ0P6D2 419 aa27.37■■□□□ 1.97
NXF1-216ENST00000533499 TIAM1Q13009 1591 aa27.32■■□□□ 1.96
NXF1-216ENST00000533499 MTUS2Q5JR59 1369 aa27.32■■□□□ 1.96
NXF1-216ENST00000533499 ABCC10Q5T3U5 1492 aa27.32■■□□□ 1.96
NXF1-216ENST00000533499 CFAP43Q8NDM7 1665 aa27.31■■□□□ 1.96
NXF1-216ENST00000533499 TROQ12816 1431 aaPredicted RBP27.29■■□□□ 1.96
NXF1-216ENST00000533499 DIP2BQ9P265 1576 aa27.29■■□□□ 1.96
NXF1-216ENST00000533499 MAGI3Q5TCQ9 1506 aa27.27■■□□□ 1.96
NXF1-216ENST00000533499 KIF13AQ9H1H9 1805 aa27.26■■□□□ 1.95
NXF1-216ENST00000533499 KANK4Q5T7N3 995 aaPredicted RBP27.23■■□□□ 1.95
NXF1-216ENST00000533499 PPARGC1BQ86YN6 1023 aaKnown RBP27.22■■□□□ 1.95
NXF1-216ENST00000533499 KIF14Q15058 1648 aa27.22■■□□□ 1.95
NXF1-216ENST00000533499 MAP3K1Q13233 1512 aa27.21■■□□□ 1.95
NXF1-216ENST00000533499 EHBP1L1Q8N3D4 1523 aa27.21■■□□□ 1.95
NXF1-216ENST00000533499 TSPOAP1O95153 1857 aa27.2■■□□□ 1.94
NXF1-216ENST00000533499 LRRC9Q6ZRR7 1453 aa27.19■■□□□ 1.94
NXF1-216ENST00000533499 GLI2P10070 1586 aa27.18■■□□□ 1.94
NXF1-216ENST00000533499 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.15■■□□□ 1.94
NXF1-216ENST00000533499 CD109Q6YHK3 1445 aa27.15■■□□□ 1.94
NXF1-216ENST00000533499 TTC37Q6PGP7 1564 aa27.14■■□□□ 1.93
NXF1-216ENST00000533499 ABCA9Q8IUA7 1624 aa27.13■■□□□ 1.93
NXF1-216ENST00000533499 SUPT6HQ7KZ85 1726 aaKnown RBP27.11■■□□□ 1.93
NXF1-216ENST00000533499 MAP3K4Q9Y6R4 1608 aa27.11■■□□□ 1.93
NXF1-216ENST00000533499 CCNB3Q8WWL7 1395 aa27.08■■□□□ 1.93
NXF1-216ENST00000533499 NCOA2Q15596 1464 aa27.07■■□□□ 1.92
NXF1-216ENST00000533499 MYO5CQ9NQX4 1742 aa27.05■■□□□ 1.92
NXF1-216ENST00000533499 ZNF777Q9ULD5 760 aaPredicted RBP27.01■■□□□ 1.91
NXF1-216ENST00000533499 ARHGAP5Q13017 1502 aa27■■□□□ 1.91
NXF1-216ENST00000533499 TEX14Q8IWB6 1497 aa27■■□□□ 1.91
NXF1-216ENST00000533499 PPRC1Q5VV67 1664 aaKnown RBP26.99■■□□□ 1.91
NXF1-216ENST00000533499 CDC42BPAQ5VT25 1732 aa26.99■■□□□ 1.91
NXF1-216ENST00000533499 PLCH2O75038 1416 aa26.99■■□□□ 1.91
NXF1-216ENST00000533499 EFCAB2Q5VUJ9 269 aa26.97■■□□□ 1.91
NXF1-216ENST00000533499 CFDP1Q9UEE9 299 aaPredicted RBP26.97■■□□□ 1.91
NXF1-216ENST00000533499 GPATCH8Q9UKJ3 1502 aaKnown RBP26.96■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms