RNA–Protein interactions for RNA: ENST00000533309.5

TRIM3-213, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 1,647 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-213ENST00000533309 CHMP7Q8WUX9 453 aaPredicted RBP25.56■■□□□ 1.68
TRIM3-213ENST00000533309 CEP170Q5SW79 1584 aa25.55■■□□□ 1.68
TRIM3-213ENST00000533309 NUP160Q12769 1436 aa25.52■■□□□ 1.68
TRIM3-213ENST00000533309 FBLN2P98095 1184 aa25.52■■□□□ 1.68
TRIM3-213ENST00000533309 IQGAP2Q13576 1575 aa25.51■■□□□ 1.67
TRIM3-213ENST00000533309 RANGAP1P46060 587 aaPredicted RBP25.48■■□□□ 1.67
TRIM3-213ENST00000533309 ARHGAP35Q9NRY4 1499 aa25.48■■□□□ 1.67
TRIM3-213ENST00000533309 KIAA0586Q9BVV6 1533 aa25.48■■□□□ 1.67
TRIM3-213ENST00000533309 ARAP1Q96P48 1450 aa25.43■■□□□ 1.66
TRIM3-213ENST00000533309 EFCAB5A4FU69 1503 aa25.43■■□□□ 1.66
TRIM3-213ENST00000533309 SAMD9Q5K651 1589 aa25.42■■□□□ 1.66
TRIM3-213ENST00000533309 UGGT2Q9NYU1 1516 aa25.39■■□□□ 1.65
TRIM3-213ENST00000533309 VPS8Q8N3P4 1428 aa25.33■■□□□ 1.65
TRIM3-213ENST00000533309 CLASP1Q7Z460 1538 aa25.3■■□□□ 1.64
TRIM3-213ENST00000533309 FHOD3Q2V2M9 1422 aa25.29■■□□□ 1.64
TRIM3-213ENST00000533309 DISP1Q96F81 1524 aa25.28■■□□□ 1.64
TRIM3-213ENST00000533309 KIAA0556O60303 1618 aa25.27■■□□□ 1.64
TRIM3-213ENST00000533309 SHROOM2Q13796 1616 aa25.26■■□□□ 1.63
TRIM3-213ENST00000533309 P3H3Q8IVL6 736 aa25.25■■□□□ 1.63
TRIM3-213ENST00000533309 JPH4Q96JJ6 628 aa25.21■■□□□ 1.63
TRIM3-213ENST00000533309 PCF11O94913 1555 aaKnown RBP25.16■■□□□ 1.62
TRIM3-213ENST00000533309 FMN1Q68DA7 1419 aa25.14■■□□□ 1.61
TRIM3-213ENST00000533309 CARMIL2Q6F5E8 1435 aa25.13■■□□□ 1.61
TRIM3-213ENST00000533309 PRG4Q92954 1404 aaPredicted RBP25.13■■□□□ 1.61
TRIM3-213ENST00000533309 FYCO1Q9BQS8 1478 aa25.08■■□□□ 1.61
TRIM3-213ENST00000533309 ERCC6L2Q5T890 1561 aa25.08■■□□□ 1.6
TRIM3-213ENST00000533309 CASKIN1Q8WXD9 1431 aa25.08■■□□□ 1.6
TRIM3-213ENST00000533309 OSCARQ8IYS5 282 aa25.07■■□□□ 1.6
TRIM3-213ENST00000533309 LRRIQ1Q96JM4 1722 aa25.03■■□□□ 1.6
TRIM3-213ENST00000533309 CFAP43Q8NDM7 1665 aa24.99■■□□□ 1.59
TRIM3-213ENST00000533309 RAPGEF6Q8TEU7 1601 aa24.98■■□□□ 1.59
TRIM3-213ENST00000533309 TIAM1Q13009 1591 aa24.97■■□□□ 1.59
TRIM3-213ENST00000533309 HECW1Q76N89 1606 aa24.97■■□□□ 1.59
TRIM3-213ENST00000533309 MAP3K1Q13233 1512 aa24.97■■□□□ 1.59
TRIM3-213ENST00000533309 PPARGC1BQ86YN6 1023 aaKnown RBP24.94■■□□□ 1.58
TRIM3-213ENST00000533309 PLB1Q6P1J6 1458 aa24.93■■□□□ 1.58
TRIM3-213ENST00000533309 TTBK1Q5TCY1 1321 aaPredicted RBP24.93■■□□□ 1.58
TRIM3-213ENST00000533309 ABCA8O94911 1581 aa24.92■■□□□ 1.58
TRIM3-213ENST00000533309 APLP2Q06481 763 aa24.92■■□□□ 1.58
TRIM3-213ENST00000533309 PTPRGP23470 1445 aa24.91■■□□□ 1.58
TRIM3-213ENST00000533309 NUP153P49790 1475 aaKnown RBP24.89■■□□□ 1.58
TRIM3-213ENST00000533309 ATP1B4Q9UN42 357 aaPredicted RBP24.88■■□□□ 1.57
TRIM3-213ENST00000533309 EPRSP07814 1512 aaKnown RBP24.87■■□□□ 1.57
TRIM3-213ENST00000533309 CCDC18Q5T9S5 1454 aa24.86■■□□□ 1.57
TRIM3-213ENST00000533309 KANK4Q5T7N3 995 aaPredicted RBP24.85■■□□□ 1.57
TRIM3-213ENST00000533309 CDK13Q14004 1512 aaKnown RBP24.83■■□□□ 1.57
TRIM3-213ENST00000533309 LRRC9Q6ZRR7 1453 aa24.82■■□□□ 1.56
TRIM3-213ENST00000533309 UACAQ9BZF9 1416 aa24.79■■□□□ 1.56
TRIM3-213ENST00000533309 ABCC2Q92887 1545 aa24.77■■□□□ 1.56
TRIM3-213ENST00000533309 ARHGEF11O15085 1522 aa24.76■■□□□ 1.55
TRIM3-213ENST00000533309 MAGI3Q5TCQ9 1506 aa24.76■■□□□ 1.55
TRIM3-213ENST00000533309 ARID3CA6NKF2 412 aa24.72■■□□□ 1.55
TRIM3-213ENST00000533309 UHRF1BP1LA0JNW5 1464 aa24.72■■□□□ 1.55
TRIM3-213ENST00000533309 EHBP1L1Q8N3D4 1523 aa24.72■■□□□ 1.55
TRIM3-213ENST00000533309 ATP10BO94823 1461 aa24.71■■□□□ 1.55
TRIM3-213ENST00000533309 RIMBP3CA6NJZ7 1639 aa24.69■■□□□ 1.54
TRIM3-213ENST00000533309 RIMBP3BA6NNM3 1639 aa24.69■■□□□ 1.54
TRIM3-213ENST00000533309 ADCY10Q96PN6 1610 aa24.69■■□□□ 1.54
TRIM3-213ENST00000533309 RIMBP3Q9UFD9 1639 aa24.69■■□□□ 1.54
TRIM3-213ENST00000533309 MTUS2Q5JR59 1369 aa24.68■■□□□ 1.54
TRIM3-213ENST00000533309 TRIM26Q12899 539 aaPredicted RBP24.67■■□□□ 1.54
TRIM3-213ENST00000533309 SUPT6HQ7KZ85 1726 aaKnown RBP24.64■■□□□ 1.54
TRIM3-213ENST00000533309 KDM5BQ9UGL1 1544 aa24.63■■□□□ 1.53
TRIM3-213ENST00000533309 ZCCHC11Q5TAX3 1644 aaKnown RBP24.62■■□□□ 1.53
TRIM3-213ENST00000533309 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.59■■□□□ 1.53
TRIM3-213ENST00000533309 HNRNPUL2Q1KMD3 747 aaKnown RBP24.59■■□□□ 1.53
TRIM3-213ENST00000533309 NCOA2Q15596 1464 aa24.59■■□□□ 1.53
TRIM3-213ENST00000533309 TROQ12816 1431 aaPredicted RBP24.58■■□□□ 1.53
TRIM3-213ENST00000533309 PHLDB1Q86UU1 1377 aa24.58■■□□□ 1.52
TRIM3-213ENST00000533309 CDK11AQ9UQ88 783 aaPredicted RBP24.57■■□□□ 1.52
TRIM3-213ENST00000533309 PCGF6Q9BYE7 350 aa24.55■■□□□ 1.52
TRIM3-213ENST00000533309 KIF14Q15058 1648 aa24.54■■□□□ 1.52
TRIM3-213ENST00000533309 RRBP1Q9P2E9 1410 aaKnown RBP24.52■■□□□ 1.52
TRIM3-213ENST00000533309 PLEKHD1A6NEE1 506 aa24.49■■□□□ 1.51
TRIM3-213ENST00000533309 MYOM3Q5VTT5 1437 aa24.46■■□□□ 1.51
TRIM3-213ENST00000533309 CCNB3Q8WWL7 1395 aa24.43■■□□□ 1.5
TRIM3-213ENST00000533309 ABCC10Q5T3U5 1492 aa24.43■■□□□ 1.5
TRIM3-213ENST00000533309 FGD6Q6ZV73 1430 aa24.42■■□□□ 1.5
TRIM3-213ENST00000533309 CYB5RLQ6IPT4 315 aa24.42■■□□□ 1.5
TRIM3-213ENST00000533309 CDC42BPAQ5VT25 1732 aa24.4■■□□□ 1.5
TRIM3-213ENST00000533309 ITSN2Q9NZM3 1697 aa24.39■■□□□ 1.5
TRIM3-213ENST00000533309 WDR7Q9Y4E6 1490 aa24.39■■□□□ 1.49
TRIM3-213ENST00000533309 TTC37Q6PGP7 1564 aa24.37■■□□□ 1.49
TRIM3-213ENST00000533309 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.36■■□□□ 1.49
TRIM3-213ENST00000533309 ASXL2Q76L83 1435 aa24.36■■□□□ 1.49
TRIM3-213ENST00000533309 PTPN23Q9H3S7 1636 aa24.36■■□□□ 1.49
TRIM3-213ENST00000533309 GPATCH8Q9UKJ3 1502 aaKnown RBP24.36■■□□□ 1.49
TRIM3-213ENST00000533309 MIA2Q96PC5 1412 aa24.34■■□□□ 1.49
TRIM3-213ENST00000533309 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.32■■□□□ 1.48
TRIM3-213ENST00000533309 PREX2Q70Z35 1606 aa24.32■■□□□ 1.48
TRIM3-213ENST00000533309 NPM1P06748 294 aaKnown RBP eCLIP24.32■■□□□ 1.48
TRIM3-213ENST00000533309 TCOF1Q13428 1488 aaKnown RBP24.31■■□□□ 1.48
TRIM3-213ENST00000533309 CDC42BPBQ9Y5S2 1711 aa24.3■■□□□ 1.48
TRIM3-213ENST00000533309 MAPKBP1O60336 1514 aa24.3■■□□□ 1.48
TRIM3-213ENST00000533309 MYO5CQ9NQX4 1742 aa24.29■■□□□ 1.48
TRIM3-213ENST00000533309 KCNH8Q96L42 1107 aa24.28■■□□□ 1.48
TRIM3-213ENST00000533309 ABCA9Q8IUA7 1624 aa24.27■■□□□ 1.48
TRIM3-213ENST00000533309 FAM50AQ14320 339 aaKnown RBP24.26■■□□□ 1.47
TRIM3-213ENST00000533309 CAMSAP2Q08AD1 1489 aa24.21■■□□□ 1.47
TRIM3-213ENST00000533309 CFDP1Q9UEE9 299 aaPredicted RBP24.21■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms