RNA–Protein interactions for RNA: ENST00000533209.5

SSBP3-214, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 4

Gene SSBP3, Length 552 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-214ENST00000533209 RIMBP3Q9UFD9 1639 aa20.03■□□□□ 0.8
SSBP3-214ENST00000533209 FAM9AQ8IZU1 332 aaPredicted RBP20■□□□□ 0.79
SSBP3-214ENST00000533209 KIAA0586Q9BVV6 1533 aa20■□□□□ 0.79
SSBP3-214ENST00000533209 SHROOM2Q13796 1616 aa19.96■□□□□ 0.79
SSBP3-214ENST00000533209 JPH4Q96JJ6 628 aa19.96■□□□□ 0.79
SSBP3-214ENST00000533209 ARAP1Q96P48 1450 aa19.92■□□□□ 0.78
SSBP3-214ENST00000533209 PRG4Q92954 1404 aaPredicted RBP19.92■□□□□ 0.78
SSBP3-214ENST00000533209 ERCC6L2Q5T890 1561 aa19.91■□□□□ 0.78
SSBP3-214ENST00000533209 CYB5RLQ6IPT4 315 aa19.88■□□□□ 0.77
SSBP3-214ENST00000533209 IQGAP2Q13576 1575 aa19.87■□□□□ 0.77
SSBP3-214ENST00000533209 KIF21BO75037 1637 aa19.84■□□□□ 0.77
SSBP3-214ENST00000533209 CTTNBP2Q8WZ74 1663 aa19.8■□□□□ 0.76
SSBP3-214ENST00000533209 UGGT2Q9NYU1 1516 aa19.79■□□□□ 0.76
SSBP3-214ENST00000533209 CARMIL2Q6F5E8 1435 aa19.76■□□□□ 0.75
SSBP3-214ENST00000533209 DISP1Q96F81 1524 aa19.76■□□□□ 0.75
SSBP3-214ENST00000533209 GOLGA3Q08378 1498 aa19.74■□□□□ 0.75
SSBP3-214ENST00000533209 EHMT2Q96KQ7 1210 aa19.73■□□□□ 0.75
SSBP3-214ENST00000533209 TNIKQ9UKE5 1360 aa19.7■□□□□ 0.74
SSBP3-214ENST00000533209 KIAA0556O60303 1618 aa19.69■□□□□ 0.74
SSBP3-214ENST00000533209 PTPRGP23470 1445 aa19.68■□□□□ 0.74
SSBP3-214ENST00000533209 UBTFP17480 764 aaKnown RBP19.68■□□□□ 0.74
SSBP3-214ENST00000533209 TTBK1Q5TCY1 1321 aaPredicted RBP19.64■□□□□ 0.73
SSBP3-214ENST00000533209 RANGAP1P46060 587 aaPredicted RBP19.6■□□□□ 0.73
SSBP3-214ENST00000533209 P3H3Q8IVL6 736 aa19.6■□□□□ 0.73
SSBP3-214ENST00000533209 SAMD9Q5K651 1589 aa19.6■□□□□ 0.73
SSBP3-214ENST00000533209 ADCY10Q96PN6 1610 aa19.57■□□□□ 0.72
SSBP3-214ENST00000533209 UACAQ9BZF9 1416 aa19.56■□□□□ 0.72
SSBP3-214ENST00000533209 UHRF1BP1LA0JNW5 1464 aa19.54■□□□□ 0.72
SSBP3-214ENST00000533209 EFCAB5A4FU69 1503 aa19.53■□□□□ 0.72
SSBP3-214ENST00000533209 FHOD3Q2V2M9 1422 aa19.51■□□□□ 0.71
SSBP3-214ENST00000533209 PLB1Q6P1J6 1458 aa19.51■□□□□ 0.71
SSBP3-214ENST00000533209 ABCC2Q92887 1545 aa19.51■□□□□ 0.71
SSBP3-214ENST00000533209 NPM1P06748 294 aaKnown RBP eCLIP19.49■□□□□ 0.71
SSBP3-214ENST00000533209 ABCA8O94911 1581 aa19.49■□□□□ 0.71
SSBP3-214ENST00000533209 ARHGAP35Q9NRY4 1499 aa19.48■□□□□ 0.71
SSBP3-214ENST00000533209 LOC105371045A0A1W2PR82 267 aa19.47■□□□□ 0.71
SSBP3-214ENST00000533209 KDM5BQ9UGL1 1544 aa19.45■□□□□ 0.7
SSBP3-214ENST00000533209 MAPKBP1O60336 1514 aa19.42■□□□□ 0.7
SSBP3-214ENST00000533209 TRHP20396 242 aaPredicted RBP19.42■□□□□ 0.7
SSBP3-214ENST00000533209 CLIP1P30622 1438 aa19.41■□□□□ 0.7
SSBP3-214ENST00000533209 RAPGEF6Q8TEU7 1601 aa19.38■□□□□ 0.69
SSBP3-214ENST00000533209 ZCCHC11Q5TAX3 1644 aaKnown RBP19.36■□□□□ 0.69
SSBP3-214ENST00000533209 FMN1Q68DA7 1419 aa19.36■□□□□ 0.69
SSBP3-214ENST00000533209 ASXL2Q76L83 1435 aa19.36■□□□□ 0.69
SSBP3-214ENST00000533209 CEP162Q5TB80 1403 aa19.35■□□□□ 0.69
SSBP3-214ENST00000533209 NUP153P49790 1475 aaKnown RBP19.35■□□□□ 0.69
SSBP3-214ENST00000533209 ATP10BO94823 1461 aa19.34■□□□□ 0.69
SSBP3-214ENST00000533209 ABCC10Q5T3U5 1492 aa19.34■□□□□ 0.69
SSBP3-214ENST00000533209 ARID3CA6NKF2 412 aa19.33■□□□□ 0.68
SSBP3-214ENST00000533209 FAM69CQ0P6D2 419 aa19.29■□□□□ 0.68
SSBP3-214ENST00000533209 DIP2BQ9P265 1576 aa19.28■□□□□ 0.68
SSBP3-214ENST00000533209 WDR7Q9Y4E6 1490 aa19.27■□□□□ 0.67
SSBP3-214ENST00000533209 KIF13AQ9H1H9 1805 aa19.25■□□□□ 0.67
SSBP3-214ENST00000533209 EPRSP07814 1512 aaKnown RBP19.25■□□□□ 0.67
SSBP3-214ENST00000533209 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.24■□□□□ 0.67
SSBP3-214ENST00000533209 HNRNPUL2Q1KMD3 747 aaKnown RBP19.24■□□□□ 0.67
SSBP3-214ENST00000533209 ATP1B4Q9UN42 357 aaPredicted RBP19.24■□□□□ 0.67
SSBP3-214ENST00000533209 CASKIN1Q8WXD9 1431 aa19.24■□□□□ 0.67
SSBP3-214ENST00000533209 HECW1Q76N89 1606 aa19.23■□□□□ 0.67
SSBP3-214ENST00000533209 PCF11O94913 1555 aaKnown RBP19.22■□□□□ 0.67
SSBP3-214ENST00000533209 CDK13Q14004 1512 aaKnown RBP19.21■□□□□ 0.67
SSBP3-214ENST00000533209 GLI2P10070 1586 aa19.21■□□□□ 0.67
SSBP3-214ENST00000533209 KCNH8Q96L42 1107 aa19.19■□□□□ 0.66
SSBP3-214ENST00000533209 FYCO1Q9BQS8 1478 aa19.19■□□□□ 0.66
SSBP3-214ENST00000533209 PLEKHD1A6NEE1 506 aa19.16■□□□□ 0.66
SSBP3-214ENST00000533209 CCDC18Q5T9S5 1454 aa19.13■□□□□ 0.65
SSBP3-214ENST00000533209 LRRIQ1Q96JM4 1722 aa19.13■□□□□ 0.65
SSBP3-214ENST00000533209 MAP3K4Q9Y6R4 1608 aa19.11■□□□□ 0.65
SSBP3-214ENST00000533209 VPS8Q8N3P4 1428 aa19.1■□□□□ 0.65
SSBP3-214ENST00000533209 CDK11AQ9UQ88 783 aaPredicted RBP19.1■□□□□ 0.65
SSBP3-214ENST00000533209 CD109Q6YHK3 1445 aa19.08■□□□□ 0.65
SSBP3-214ENST00000533209 PPRC1Q5VV67 1664 aaKnown RBP19.07■□□□□ 0.64
SSBP3-214ENST00000533209 TROQ12816 1431 aaPredicted RBP19.07■□□□□ 0.64
SSBP3-214ENST00000533209 ABCA9Q8IUA7 1624 aa19.07■□□□□ 0.64
SSBP3-214ENST00000533209 TSPOAP1O95153 1857 aa19.05■□□□□ 0.64
SSBP3-214ENST00000533209 CFAP43Q8NDM7 1665 aa19.05■□□□□ 0.64
SSBP3-214ENST00000533209 MAGI3Q5TCQ9 1506 aa19.04■□□□□ 0.64
SSBP3-214ENST00000533209 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.03■□□□□ 0.64
SSBP3-214ENST00000533209 TEX14Q8IWB6 1497 aa19.02■□□□□ 0.63
SSBP3-214ENST00000533209 TTC37Q6PGP7 1564 aa18.99■□□□□ 0.63
SSBP3-214ENST00000533209 KIF14Q15058 1648 aa18.99■□□□□ 0.63
SSBP3-214ENST00000533209 MTUS2Q5JR59 1369 aa18.95■□□□□ 0.62
SSBP3-214ENST00000533209 TIAM1Q13009 1591 aa18.94■□□□□ 0.62
SSBP3-214ENST00000533209 COL17A1Q9UMD9 1497 aaPredicted RBP18.94■□□□□ 0.62
SSBP3-214ENST00000533209 PLCH2O75038 1416 aa18.93■□□□□ 0.62
SSBP3-214ENST00000533209 KDM6BO15054 1643 aa18.92■□□□□ 0.62
SSBP3-214ENST00000533209 MAP3K1Q13233 1512 aa18.92■□□□□ 0.62
SSBP3-214ENST00000533209 NEO1Q92859 1461 aa18.91■□□□□ 0.62
SSBP3-214ENST00000533209 PHLDB1Q86UU1 1377 aa18.91■□□□□ 0.62
SSBP3-214ENST00000533209 EHBP1L1Q8N3D4 1523 aa18.9■□□□□ 0.62
SSBP3-214ENST00000533209 FANCAO15360 1455 aa18.9■□□□□ 0.62
SSBP3-214ENST00000533209 ARAP3Q8WWN8 1544 aa18.89■□□□□ 0.61
SSBP3-214ENST00000533209 KANK4Q5T7N3 995 aaPredicted RBP18.87■□□□□ 0.61
SSBP3-214ENST00000533209 LRRC9Q6ZRR7 1453 aa18.87■□□□□ 0.61
SSBP3-214ENST00000533209 AKNAQ7Z591 1439 aa18.86■□□□□ 0.61
SSBP3-214ENST00000533209 EFCAB2Q5VUJ9 269 aa18.86■□□□□ 0.61
SSBP3-214ENST00000533209 MYO5CQ9NQX4 1742 aa18.86■□□□□ 0.61
SSBP3-214ENST00000533209 APLP2Q06481 763 aa18.85■□□□□ 0.61
SSBP3-214ENST00000533209 GPATCH8Q9UKJ3 1502 aaKnown RBP18.84■□□□□ 0.61
SSBP3-214ENST00000533209 CFAP74Q9C0B2 1584 aa18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms