RNA–Protein interactions for RNA: ENST00000530893.6

BRCA2-204, Transcript of BRCA2, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA2, Length 2,011 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA2-204ENST00000530893 URB2Q14146 1524 aaKnown RBP25.59■■□□□ 1.69
BRCA2-204ENST00000530893 CTTNBP2Q8WZ74 1663 aa25.55■■□□□ 1.68
BRCA2-204ENST00000530893 CFAP43Q8NDM7 1665 aa25.53■■□□□ 1.68
BRCA2-204ENST00000530893 LRRC9Q6ZRR7 1453 aa25.51■■□□□ 1.68
BRCA2-204ENST00000530893 ABCA5Q8WWZ7 1642 aa25.51■■□□□ 1.67
BRCA2-204ENST00000530893 DHX57Q6P158 1386 aaKnown RBP25.5■■□□□ 1.67
BRCA2-204ENST00000530893 AQRO60306 1485 aaKnown RBP eCLIP25.48■■□□□ 1.67
BRCA2-204ENST00000530893 PCF11O94913 1555 aaKnown RBP25.47■■□□□ 1.67
BRCA2-204ENST00000530893 FYCO1Q9BQS8 1478 aa25.47■■□□□ 1.67
BRCA2-204ENST00000530893 CASKIN1Q8WXD9 1431 aa25.42■■□□□ 1.66
BRCA2-204ENST00000530893 KIF21AQ7Z4S6 1674 aa25.42■■□□□ 1.66
BRCA2-204ENST00000530893 GAPVD1Q14C86 1478 aa25.41■■□□□ 1.66
BRCA2-204ENST00000530893 FHOD3Q2V2M9 1422 aa25.38■■□□□ 1.65
BRCA2-204ENST00000530893 FMN1Q68DA7 1419 aa25.38■■□□□ 1.65
BRCA2-204ENST00000530893 TDRD9Q8NDG6 1382 aaKnown RBP25.34■■□□□ 1.65
BRCA2-204ENST00000530893 TARBP1Q13395 1621 aaKnown RBP25.34■■□□□ 1.65
BRCA2-204ENST00000530893 SAMD9Q5K651 1589 aa25.33■■□□□ 1.65
BRCA2-204ENST00000530893 PHLDB1Q86UU1 1377 aa25.32■■□□□ 1.64
BRCA2-204ENST00000530893 P3H3Q8IVL6 736 aa25.3■■□□□ 1.64
BRCA2-204ENST00000530893 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.29■■□□□ 1.64
BRCA2-204ENST00000530893 SNAPC4Q5SXM2 1469 aa25.26■■□□□ 1.63
BRCA2-204ENST00000530893 CENPBP07199 599 aaPredicted RBP25.25■■□□□ 1.63
BRCA2-204ENST00000530893 RAB3GAP2Q9H2M9 1393 aa25.25■■□□□ 1.63
BRCA2-204ENST00000530893 ACIN1Q9UKV3 1341 aaKnown RBP25.24■■□□□ 1.63
BRCA2-204ENST00000530893 THOC2Q8NI27 1593 aaKnown RBP25.24■■□□□ 1.63
BRCA2-204ENST00000530893 SETD5Q9C0A6 1442 aa25.23■■□□□ 1.63
BRCA2-204ENST00000530893 SCAF1Q9H7N4 1312 aaKnown RBP25.23■■□□□ 1.63
BRCA2-204ENST00000530893 ITGAEP38570 1179 aa25.2■■□□□ 1.63
BRCA2-204ENST00000530893 PBRM1Q86U86 1689 aa25.2■■□□□ 1.62
BRCA2-204ENST00000530893 ATP1B4Q9UN42 357 aaPredicted RBP25.19■■□□□ 1.62
BRCA2-204ENST00000530893 MRC2Q9UBG0 1479 aa25.19■■□□□ 1.62
BRCA2-204ENST00000530893 GRIN2BQ13224 1484 aa25.14■■□□□ 1.62
BRCA2-204ENST00000530893 FAM50AQ14320 339 aaKnown RBP25.13■■□□□ 1.61
BRCA2-204ENST00000530893 MAPKBP1O60336 1514 aa25.13■■□□□ 1.61
BRCA2-204ENST00000530893 NEUROD1Q13562 356 aa25.12■■□□□ 1.61
BRCA2-204ENST00000530893 ADAMTS12P58397 1594 aa25.1■■□□□ 1.61
BRCA2-204ENST00000530893 MTUS2Q5JR59 1369 aa25.09■■□□□ 1.61
BRCA2-204ENST00000530893 LRRIQ1Q96JM4 1722 aa25.09■■□□□ 1.61
BRCA2-204ENST00000530893 FGD6Q6ZV73 1430 aa25.09■■□□□ 1.61
BRCA2-204ENST00000530893 EHBP1L1Q8N3D4 1523 aa25.06■■□□□ 1.6
BRCA2-204ENST00000530893 CCDC18Q5T9S5 1454 aa25.05■■□□□ 1.6
BRCA2-204ENST00000530893 IQGAP2Q13576 1575 aa25.05■■□□□ 1.6
BRCA2-204ENST00000530893 IFT140Q96RY7 1462 aa25.05■■□□□ 1.6
BRCA2-204ENST00000530893 SUPT6HQ7KZ85 1726 aaKnown RBP25.04■■□□□ 1.6
BRCA2-204ENST00000530893 MIER1Q8N108 512 aa25.04■■□□□ 1.6
BRCA2-204ENST00000530893 WDR62O43379 1518 aa25.03■■□□□ 1.6
BRCA2-204ENST00000530893 NCOA2Q15596 1464 aa25■■□□□ 1.59
BRCA2-204ENST00000530893 HECW1Q76N89 1606 aa24.99■■□□□ 1.59
BRCA2-204ENST00000530893 MYOM3Q5VTT5 1437 aa24.99■■□□□ 1.59
BRCA2-204ENST00000530893 TIMELESSQ9UNS1 1208 aa24.98■■□□□ 1.59
BRCA2-204ENST00000530893 ARHGEF11O15085 1522 aa24.96■■□□□ 1.59
BRCA2-204ENST00000530893 UGGT2Q9NYU1 1516 aa24.95■■□□□ 1.58
BRCA2-204ENST00000530893 HFM1A2PYH4 1435 aa24.92■■□□□ 1.58
BRCA2-204ENST00000530893 PTPN23Q9H3S7 1636 aa24.87■■□□□ 1.57
BRCA2-204ENST00000530893 EPRSP07814 1512 aaKnown RBP24.87■■□□□ 1.57
BRCA2-204ENST00000530893 MAGI3Q5TCQ9 1506 aa24.86■■□□□ 1.57
BRCA2-204ENST00000530893 ZNF608Q9ULD9 1512 aaPredicted RBP24.86■■□□□ 1.57
BRCA2-204ENST00000530893 KIAA0586Q9BVV6 1533 aa24.86■■□□□ 1.57
BRCA2-204ENST00000530893 TCOF1Q13428 1488 aaKnown RBP24.85■■□□□ 1.57
BRCA2-204ENST00000530893 GTF3C3Q9Y5Q9 886 aa24.85■■□□□ 1.57
BRCA2-204ENST00000530893 PTPRKQ15262 1439 aa24.83■■□□□ 1.56
BRCA2-204ENST00000530893 UACAQ9BZF9 1416 aa24.83■■□□□ 1.56
BRCA2-204ENST00000530893 EIF4G3O43432 1585 aaKnown RBP24.81■■□□□ 1.56
BRCA2-204ENST00000530893 NAIPQ13075 1403 aa24.8■■□□□ 1.56
BRCA2-204ENST00000530893 YTHDC1Q96MU7 727 aaKnown RBP24.79■■□□□ 1.56
BRCA2-204ENST00000530893 MIA2Q96PC5 1412 aa24.79■■□□□ 1.56
BRCA2-204ENST00000530893 KIAA0556O60303 1618 aa24.78■■□□□ 1.56
BRCA2-204ENST00000530893 GRIN2AQ12879 1464 aa24.78■■□□□ 1.56
BRCA2-204ENST00000530893 SIN3AQ96ST3 1273 aa24.77■■□□□ 1.56
BRCA2-204ENST00000530893 AKNAQ7Z591 1439 aa24.76■■□□□ 1.55
BRCA2-204ENST00000530893 MAGI1Q96QZ7 1491 aaPredicted RBP24.75■■□□□ 1.55
BRCA2-204ENST00000530893 DISP1Q96F81 1524 aa24.74■■□□□ 1.55
BRCA2-204ENST00000530893 ERCC6Q03468 1493 aa24.74■■□□□ 1.55
BRCA2-204ENST00000530893 GCC2Q8IWJ2 1684 aa24.73■■□□□ 1.55
BRCA2-204ENST00000530893 CDK13Q14004 1512 aaKnown RBP24.72■■□□□ 1.55
BRCA2-204ENST00000530893 PPP1R15AO75807 674 aaPredicted RBP24.69■■□□□ 1.54
BRCA2-204ENST00000530893 PELP1Q8IZL8 1130 aaKnown RBP24.68■■□□□ 1.54
BRCA2-204ENST00000530893 RAPGEF6Q8TEU7 1601 aa24.67■■□□□ 1.54
BRCA2-204ENST00000530893 SYNJ2O15056 1496 aa24.65■■□□□ 1.54
BRCA2-204ENST00000530893 TONSLQ96HA7 1378 aa24.63■■□□□ 1.53
BRCA2-204ENST00000530893 NUP153P49790 1475 aaKnown RBP24.63■■□□□ 1.53
BRCA2-204ENST00000530893 CDK11AQ9UQ88 783 aaPredicted RBP24.6■■□□□ 1.53
BRCA2-204ENST00000530893 CEP170Q5SW79 1584 aa24.58■■□□□ 1.53
BRCA2-204ENST00000530893 ROCK1Q13464 1354 aa24.56■■□□□ 1.52
BRCA2-204ENST00000530893 CHMP7Q8WUX9 453 aaPredicted RBP24.56■■□□□ 1.52
BRCA2-204ENST00000530893 NUP160Q12769 1436 aa24.54■■□□□ 1.52
BRCA2-204ENST00000530893 DNMT1P26358 1616 aaKnown RBP24.53■■□□□ 1.52
BRCA2-204ENST00000530893 RRP7BPQ9NSQ0 103 aa24.52■■□□□ 1.52
BRCA2-204ENST00000530893 CARMIL2Q6F5E8 1435 aa24.52■■□□□ 1.52
BRCA2-204ENST00000530893 DAPK1P53355 1430 aa24.51■■□□□ 1.51
BRCA2-204ENST00000530893 TROQ12816 1431 aaPredicted RBP24.49■■□□□ 1.51
BRCA2-204ENST00000530893 CHIC2Q9UKJ5 165 aa24.49■■□□□ 1.51
BRCA2-204ENST00000530893 ITSN2Q9NZM3 1697 aa24.48■■□□□ 1.51
BRCA2-204ENST00000530893 ADCY10Q96PN6 1610 aa24.47■■□□□ 1.51
BRCA2-204ENST00000530893 DENND4BO75064 1496 aaPredicted RBP24.46■■□□□ 1.51
BRCA2-204ENST00000530893 KDM6BO15054 1643 aa24.46■■□□□ 1.51
BRCA2-204ENST00000530893 KDM5BQ9UGL1 1544 aa24.46■■□□□ 1.51
BRCA2-204ENST00000530893 ARID3CA6NKF2 412 aa24.45■■□□□ 1.51
BRCA2-204ENST00000530893 ABCC5O15440 1437 aa24.44■■□□□ 1.5
BRCA2-204ENST00000530893 DDX10Q13206 875 aaKnown RBP24.43■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms