RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 GOLGA3Q08378 1498 aa34.13■■■■□ 3.05
VPS28-212ENST00000530836 EHMT2Q96KQ7 1210 aa34.02■■■■□ 3.04
VPS28-212ENST00000530836 KIAA0586Q9BVV6 1533 aa34■■■■□ 3.03
VPS28-212ENST00000530836 TNIKQ9UKE5 1360 aa34■■■■□ 3.03
VPS28-212ENST00000530836 JPH4Q96JJ6 628 aa33.96■■■■□ 3.03
VPS28-212ENST00000530836 UBTFP17480 764 aaKnown RBP33.93■■■■□ 3.02
VPS28-212ENST00000530836 ARHGEF11O15085 1522 aa33.91■■■■□ 3.02
VPS28-212ENST00000530836 SHROOM2Q13796 1616 aa33.85■■■■□ 3.01
VPS28-212ENST00000530836 RIMBP3CA6NJZ7 1639 aa33.83■■■■□ 3.01
VPS28-212ENST00000530836 RIMBP3BA6NNM3 1639 aa33.83■■■■□ 3.01
VPS28-212ENST00000530836 RIMBP3Q9UFD9 1639 aa33.83■■■■□ 3.01
VPS28-212ENST00000530836 PRG4Q92954 1404 aaPredicted RBP33.8■■■■□ 3
VPS28-212ENST00000530836 IQGAP2Q13576 1575 aa33.8■■■■□ 3
VPS28-212ENST00000530836 CEP162Q5TB80 1403 aa33.73■■■□□ 2.99
VPS28-212ENST00000530836 ERCC6L2Q5T890 1561 aa33.73■■■□□ 2.99
VPS28-212ENST00000530836 CTTNBP2Q8WZ74 1663 aa33.68■■■□□ 2.98
VPS28-212ENST00000530836 CYB5RLQ6IPT4 315 aa33.68■■■□□ 2.98
VPS28-212ENST00000530836 ARAP1Q96P48 1450 aa33.68■■■□□ 2.98
VPS28-212ENST00000530836 UGGT2Q9NYU1 1516 aa33.66■■■□□ 2.98
VPS28-212ENST00000530836 CARMIL2Q6F5E8 1435 aa33.63■■■□□ 2.97
VPS28-212ENST00000530836 DISP1Q96F81 1524 aa33.58■■■□□ 2.97
VPS28-212ENST00000530836 CLIP1P30622 1438 aa33.55■■■□□ 2.96
VPS28-212ENST00000530836 RANGAP1P46060 587 aaPredicted RBP33.49■■■□□ 2.95
VPS28-212ENST00000530836 PTPRGP23470 1445 aa33.47■■■□□ 2.95
VPS28-212ENST00000530836 KIAA0556O60303 1618 aa33.46■■■□□ 2.95
VPS28-212ENST00000530836 TTBK1Q5TCY1 1321 aaPredicted RBP33.42■■■□□ 2.94
VPS28-212ENST00000530836 P3H3Q8IVL6 736 aa33.4■■■□□ 2.94
VPS28-212ENST00000530836 SAMD9Q5K651 1589 aa33.36■■■□□ 2.93
VPS28-212ENST00000530836 EFCAB5A4FU69 1503 aa33.3■■■□□ 2.92
VPS28-212ENST00000530836 VPS8Q8N3P4 1428 aa33.25■■■□□ 2.91
VPS28-212ENST00000530836 FHOD3Q2V2M9 1422 aa33.24■■■□□ 2.91
VPS28-212ENST00000530836 UACAQ9BZF9 1416 aa33.24■■■□□ 2.91
VPS28-212ENST00000530836 ARHGAP35Q9NRY4 1499 aa33.23■■■□□ 2.91
VPS28-212ENST00000530836 UHRF1BP1LA0JNW5 1464 aa33.17■■■□□ 2.9
VPS28-212ENST00000530836 ADCY10Q96PN6 1610 aa33.16■■■□□ 2.9
VPS28-212ENST00000530836 PLB1Q6P1J6 1458 aa33.16■■■□□ 2.9
VPS28-212ENST00000530836 NPM1P06748 294 aaKnown RBP eCLIP33.15■■■□□ 2.9
VPS28-212ENST00000530836 ABCC2Q92887 1545 aa33.12■■■□□ 2.89
VPS28-212ENST00000530836 ABCA8O94911 1581 aa33.1■■■□□ 2.89
VPS28-212ENST00000530836 FMN1Q68DA7 1419 aa33.04■■■□□ 2.88
VPS28-212ENST00000530836 KDM5BQ9UGL1 1544 aa33.01■■■□□ 2.87
VPS28-212ENST00000530836 APLP2Q06481 763 aa32.96■■■□□ 2.87
VPS28-212ENST00000530836 RAPGEF6Q8TEU7 1601 aa32.96■■■□□ 2.87
VPS28-212ENST00000530836 MAPKBP1O60336 1514 aa32.92■■■□□ 2.86
VPS28-212ENST00000530836 NUP153P49790 1475 aaKnown RBP32.91■■■□□ 2.86
VPS28-212ENST00000530836 ARID3CA6NKF2 412 aa32.91■■■□□ 2.86
VPS28-212ENST00000530836 ATP10BO94823 1461 aa32.89■■■□□ 2.86
VPS28-212ENST00000530836 TRIM26Q12899 539 aaPredicted RBP32.89■■■□□ 2.86
VPS28-212ENST00000530836 ZCCHC11Q5TAX3 1644 aaKnown RBP32.86■■■□□ 2.85
VPS28-212ENST00000530836 TRHP20396 242 aaPredicted RBP32.86■■■□□ 2.85
VPS28-212ENST00000530836 ATP1B4Q9UN42 357 aaPredicted RBP32.86■■■□□ 2.85
VPS28-212ENST00000530836 ASXL2Q76L83 1435 aa32.85■■■□□ 2.85
VPS28-212ENST00000530836 CASKIN1Q8WXD9 1431 aa32.83■■■□□ 2.85
VPS28-212ENST00000530836 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.8■■■□□ 2.84
VPS28-212ENST00000530836 HNRNPUL2Q1KMD3 747 aaKnown RBP32.8■■■□□ 2.84
VPS28-212ENST00000530836 FYCO1Q9BQS8 1478 aa32.78■■■□□ 2.84
VPS28-212ENST00000530836 MAP3K1Q13233 1512 aa32.77■■■□□ 2.84
VPS28-212ENST00000530836 ABCC10Q5T3U5 1492 aa32.75■■■□□ 2.83
VPS28-212ENST00000530836 HECW1Q76N89 1606 aa32.75■■■□□ 2.83
VPS28-212ENST00000530836 PPARGC1BQ86YN6 1023 aaKnown RBP32.74■■■□□ 2.83
VPS28-212ENST00000530836 EPRSP07814 1512 aaKnown RBP32.73■■■□□ 2.83
VPS28-212ENST00000530836 FAM69CQ0P6D2 419 aa32.73■■■□□ 2.83
VPS28-212ENST00000530836 PCF11O94913 1555 aaKnown RBP32.72■■■□□ 2.83
VPS28-212ENST00000530836 WDR7Q9Y4E6 1490 aa32.72■■■□□ 2.83
VPS28-212ENST00000530836 PCGF6Q9BYE7 350 aa32.7■■■□□ 2.83
VPS28-212ENST00000530836 PLEKHD1A6NEE1 506 aa32.69■■■□□ 2.82
VPS28-212ENST00000530836 CDK13Q14004 1512 aaKnown RBP32.68■■■□□ 2.82
VPS28-212ENST00000530836 KCNH8Q96L42 1107 aa32.66■■■□□ 2.82
VPS28-212ENST00000530836 DIP2BQ9P265 1576 aa32.64■■■□□ 2.82
VPS28-212ENST00000530836 CDK11AQ9UQ88 783 aaPredicted RBP32.63■■■□□ 2.81
VPS28-212ENST00000530836 TIAM1Q13009 1591 aa32.63■■■□□ 2.81
VPS28-212ENST00000530836 CCDC18Q5T9S5 1454 aa32.62■■■□□ 2.81
VPS28-212ENST00000530836 GLI2P10070 1586 aa32.57■■■□□ 2.8
VPS28-212ENST00000530836 CFAP43Q8NDM7 1665 aa32.56■■■□□ 2.8
VPS28-212ENST00000530836 KIF13AQ9H1H9 1805 aa32.56■■■□□ 2.8
VPS28-212ENST00000530836 LRRIQ1Q96JM4 1722 aa32.55■■■□□ 2.8
VPS28-212ENST00000530836 KANK4Q5T7N3 995 aaPredicted RBP32.52■■■□□ 2.8
VPS28-212ENST00000530836 LRRC9Q6ZRR7 1453 aa32.49■■■□□ 2.79
VPS28-212ENST00000530836 TROQ12816 1431 aaPredicted RBP32.48■■■□□ 2.79
VPS28-212ENST00000530836 CD109Q6YHK3 1445 aa32.42■■■□□ 2.78
VPS28-212ENST00000530836 MAGI3Q5TCQ9 1506 aa32.4■■■□□ 2.78
VPS28-212ENST00000530836 MAP3K4Q9Y6R4 1608 aa32.39■■■□□ 2.78
VPS28-212ENST00000530836 ABCA9Q8IUA7 1624 aa32.37■■■□□ 2.77
VPS28-212ENST00000530836 MTUS2Q5JR59 1369 aa32.36■■■□□ 2.77
VPS28-212ENST00000530836 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP32.35■■■□□ 2.777e-7■■□□□ 14.3
VPS28-212ENST00000530836 KIF14Q15058 1648 aa32.3■■■□□ 2.76
VPS28-212ENST00000530836 TSPOAP1O95153 1857 aa32.28■■■□□ 2.76
VPS28-212ENST00000530836 EHBP1L1Q8N3D4 1523 aa32.28■■■□□ 2.76
VPS28-212ENST00000530836 TEX14Q8IWB6 1497 aa32.27■■■□□ 2.76
VPS28-212ENST00000530836 PPRC1Q5VV67 1664 aaKnown RBP32.26■■■□□ 2.76
VPS28-212ENST00000530836 TTC37Q6PGP7 1564 aa32.26■■■□□ 2.75
VPS28-212ENST00000530836 RRBP1Q9P2E9 1410 aaKnown RBP32.23■■■□□ 2.75
VPS28-212ENST00000530836 PLCH2O75038 1416 aa32.22■■■□□ 2.75
VPS28-212ENST00000530836 SUPT6HQ7KZ85 1726 aaKnown RBP32.16■■■□□ 2.74
VPS28-212ENST00000530836 PHLDB1Q86UU1 1377 aa32.14■■■□□ 2.74
VPS28-212ENST00000530836 CCNB3Q8WWL7 1395 aa32.14■■■□□ 2.73
VPS28-212ENST00000530836 EFCAB2Q5VUJ9 269 aa32.13■■■□□ 2.73
VPS28-212ENST00000530836 NEO1Q92859 1461 aa32.12■■■□□ 2.73
VPS28-212ENST00000530836 FANCAO15360 1455 aa32.11■■■□□ 2.73
VPS28-212ENST00000530836 ARAP3Q8WWN8 1544 aa32.11■■■□□ 2.73
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms