RNA–Protein interactions for RNA: ENST00000530700.1

USH1C-209, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 403 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-209ENST00000530700 LOC105371045A0A1W2PR82 267 aa22.01■■□□□ 1.11
USH1C-209ENST00000530700 KIAA0586Q9BVV6 1533 aa21.99■■□□□ 1.11
USH1C-209ENST00000530700 JPH4Q96JJ6 628 aa21.97■■□□□ 1.11
USH1C-209ENST00000530700 TNIKQ9UKE5 1360 aa21.96■■□□□ 1.11
USH1C-209ENST00000530700 CHD1O14646 1710 aa21.93■■□□□ 1.1
USH1C-209ENST00000530700 CEP170Q5SW79 1584 aa21.9■■□□□ 1.1
USH1C-209ENST00000530700 RANGAP1P46060 587 aaPredicted RBP21.83■■□□□ 1.09
USH1C-209ENST00000530700 CLASP1Q7Z460 1538 aa21.82■■□□□ 1.08
USH1C-209ENST00000530700 IQGAP2Q13576 1575 aa21.82■■□□□ 1.08
USH1C-209ENST00000530700 CARMIL2Q6F5E8 1435 aa21.81■■□□□ 1.08
USH1C-209ENST00000530700 PRG4Q92954 1404 aaPredicted RBP21.79■■□□□ 1.08
USH1C-209ENST00000530700 UGGT2Q9NYU1 1516 aa21.75■■□□□ 1.07
USH1C-209ENST00000530700 CTTNBP2Q8WZ74 1663 aa21.72■■□□□ 1.07
USH1C-209ENST00000530700 CLIP1P30622 1438 aa21.72■■□□□ 1.07
USH1C-209ENST00000530700 P3H3Q8IVL6 736 aa21.71■■□□□ 1.07
USH1C-209ENST00000530700 CEP162Q5TB80 1403 aa21.69■■□□□ 1.06
USH1C-209ENST00000530700 SHROOM2Q13796 1616 aa21.68■■□□□ 1.06
USH1C-209ENST00000530700 EFCAB5A4FU69 1503 aa21.66■■□□□ 1.06
USH1C-209ENST00000530700 DISP1Q96F81 1524 aa21.65■■□□□ 1.06
USH1C-209ENST00000530700 PTPRGP23470 1445 aa21.65■■□□□ 1.06
USH1C-209ENST00000530700 ARHGAP35Q9NRY4 1499 aa21.61■■□□□ 1.05
USH1C-209ENST00000530700 TTBK1Q5TCY1 1321 aaPredicted RBP21.6■■□□□ 1.05
USH1C-209ENST00000530700 ARHGEF11O15085 1522 aa21.59■■□□□ 1.05
USH1C-209ENST00000530700 FMN1Q68DA7 1419 aa21.57■■□□□ 1.04
USH1C-209ENST00000530700 KIAA0556O60303 1618 aa21.57■■□□□ 1.04
USH1C-209ENST00000530700 SAMD9Q5K651 1589 aa21.57■■□□□ 1.04
USH1C-209ENST00000530700 FHOD3Q2V2M9 1422 aa21.56■■□□□ 1.04
USH1C-209ENST00000530700 CYB5RLQ6IPT4 315 aa21.55■■□□□ 1.04
USH1C-209ENST00000530700 ERCC6L2Q5T890 1561 aa21.52■■□□□ 1.04
USH1C-209ENST00000530700 ARAP1Q96P48 1450 aa21.5■■□□□ 1.03
USH1C-209ENST00000530700 UACAQ9BZF9 1416 aa21.47■■□□□ 1.03
USH1C-209ENST00000530700 NPM1P06748 294 aaKnown RBP eCLIP21.47■■□□□ 1.03
USH1C-209ENST00000530700 ATP1B4Q9UN42 357 aaPredicted RBP21.47■■□□□ 1.03
USH1C-209ENST00000530700 RIMBP3CA6NJZ7 1639 aa21.47■■□□□ 1.03
USH1C-209ENST00000530700 RIMBP3BA6NNM3 1639 aa21.47■■□□□ 1.03
USH1C-209ENST00000530700 RIMBP3Q9UFD9 1639 aa21.47■■□□□ 1.03
USH1C-209ENST00000530700 VPS8Q8N3P4 1428 aa21.43■■□□□ 1.02
USH1C-209ENST00000530700 APLP2Q06481 763 aa21.42■■□□□ 1.02
USH1C-209ENST00000530700 UHRF1BP1LA0JNW5 1464 aa21.39■■□□□ 1.02
USH1C-209ENST00000530700 CASKIN1Q8WXD9 1431 aa21.39■■□□□ 1.02
USH1C-209ENST00000530700 PLB1Q6P1J6 1458 aa21.39■■□□□ 1.01
USH1C-209ENST00000530700 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.37■■□□□ 1.01
USH1C-209ENST00000530700 HNRNPUL2Q1KMD3 747 aaKnown RBP21.37■■□□□ 1.01
USH1C-209ENST00000530700 CDK11AQ9UQ88 783 aaPredicted RBP21.37■■□□□ 1.01
USH1C-209ENST00000530700 ABCA8O94911 1581 aa21.33■■□□□ 1.01
USH1C-209ENST00000530700 ABCC2Q92887 1545 aa21.33■■□□□ 1
USH1C-209ENST00000530700 FYCO1Q9BQS8 1478 aa21.32■■□□□ 1
USH1C-209ENST00000530700 PLEKHD1A6NEE1 506 aa21.31■■□□□ 1
USH1C-209ENST00000530700 RAPGEF6Q8TEU7 1601 aa21.29■■□□□ 1
USH1C-209ENST00000530700 ARID3CA6NKF2 412 aa21.28■■□□□ 1
USH1C-209ENST00000530700 NUP153P49790 1475 aaKnown RBP21.27■■□□□ 1
USH1C-209ENST00000530700 KDM5BQ9UGL1 1544 aa21.26■□□□□ 0.99
USH1C-209ENST00000530700 ATP10BO94823 1461 aa21.26■□□□□ 0.99
USH1C-209ENST00000530700 CCDC18Q5T9S5 1454 aa21.26■□□□□ 0.99
USH1C-209ENST00000530700 HECW1Q76N89 1606 aa21.25■□□□□ 0.99
USH1C-209ENST00000530700 EPRSP07814 1512 aaKnown RBP21.24■□□□□ 0.99
USH1C-209ENST00000530700 ADCY10Q96PN6 1610 aa21.21■□□□□ 0.99
USH1C-209ENST00000530700 PCF11O94913 1555 aaKnown RBP21.19■□□□□ 0.98
USH1C-209ENST00000530700 MAP3K1Q13233 1512 aa21.19■□□□□ 0.98
USH1C-209ENST00000530700 MTUS2Q5JR59 1369 aa21.15■□□□□ 0.98
USH1C-209ENST00000530700 KCNH8Q96L42 1107 aa21.14■□□□□ 0.97
USH1C-209ENST00000530700 ASXL2Q76L83 1435 aa21.12■□□□□ 0.97
USH1C-209ENST00000530700 CDK13Q14004 1512 aaKnown RBP21.12■□□□□ 0.97
USH1C-209ENST00000530700 KANK4Q5T7N3 995 aaPredicted RBP21.1■□□□□ 0.97
USH1C-209ENST00000530700 SENP3Q9H4L4 574 aaPredicted RBP21.1■□□□□ 0.97
USH1C-209ENST00000530700 TROQ12816 1431 aaPredicted RBP21.09■□□□□ 0.97
USH1C-209ENST00000530700 MAPKBP1O60336 1514 aa21.09■□□□□ 0.97
USH1C-209ENST00000530700 WDR7Q9Y4E6 1490 aa21.08■□□□□ 0.97
USH1C-209ENST00000530700 ZCCHC11Q5TAX3 1644 aaKnown RBP21.08■□□□□ 0.97
USH1C-209ENST00000530700 TIAM1Q13009 1591 aa21.06■□□□□ 0.96
USH1C-209ENST00000530700 LRRC9Q6ZRR7 1453 aa21.06■□□□□ 0.96
USH1C-209ENST00000530700 FAM69CQ0P6D2 419 aa21.04■□□□□ 0.96
USH1C-209ENST00000530700 TRHP20396 242 aaPredicted RBP21■□□□□ 0.95
USH1C-209ENST00000530700 EHBP1L1Q8N3D4 1523 aa20.99■□□□□ 0.95
USH1C-209ENST00000530700 PPARGC1BQ86YN6 1023 aaKnown RBP20.98■□□□□ 0.95
USH1C-209ENST00000530700 ABCC10Q5T3U5 1492 aa20.98■□□□□ 0.95
USH1C-209ENST00000530700 CFAP43Q8NDM7 1665 aa20.95■□□□□ 0.94
USH1C-209ENST00000530700 CCNB3Q8WWL7 1395 aa20.95■□□□□ 0.94
USH1C-209ENST00000530700 LRRIQ1Q96JM4 1722 aa20.94■□□□□ 0.94
USH1C-209ENST00000530700 MAGI3Q5TCQ9 1506 aa20.94■□□□□ 0.94
USH1C-209ENST00000530700 EFCAB2Q5VUJ9 269 aa20.91■□□□□ 0.94
USH1C-209ENST00000530700 CD109Q6YHK3 1445 aa20.91■□□□□ 0.94
USH1C-209ENST00000530700 CFDP1Q9UEE9 299 aaPredicted RBP20.91■□□□□ 0.94
USH1C-209ENST00000530700 NCOA2Q15596 1464 aa20.9■□□□□ 0.94
USH1C-209ENST00000530700 KIF14Q15058 1648 aa20.89■□□□□ 0.94
USH1C-209ENST00000530700 GLI2P10070 1586 aa20.89■□□□□ 0.94
USH1C-209ENST00000530700 PLCH2O75038 1416 aa20.87■□□□□ 0.93
USH1C-209ENST00000530700 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.86■□□□□ 0.93
USH1C-209ENST00000530700 SUPT6HQ7KZ85 1726 aaKnown RBP20.86■□□□□ 0.93
USH1C-209ENST00000530700 GPATCH8Q9UKJ3 1502 aaKnown RBP20.83■□□□□ 0.93
USH1C-209ENST00000530700 PHLDB1Q86UU1 1377 aa20.83■□□□□ 0.92
USH1C-209ENST00000530700 DIP2BQ9P265 1576 aa20.82■□□□□ 0.92
USH1C-209ENST00000530700 MYOM3Q5VTT5 1437 aa20.82■□□□□ 0.92
USH1C-209ENST00000530700 MIA2Q96PC5 1412 aa20.82■□□□□ 0.92
USH1C-209ENST00000530700 ZNF777Q9ULD5 760 aaPredicted RBP20.81■□□□□ 0.92
USH1C-209ENST00000530700 ABCA9Q8IUA7 1624 aa20.81■□□□□ 0.92
USH1C-209ENST00000530700 RSPH4AQ5TD94 716 aa20.79■□□□□ 0.92
USH1C-209ENST00000530700 ARAP3Q8WWN8 1544 aa20.78■□□□□ 0.92
USH1C-209ENST00000530700 TEX14Q8IWB6 1497 aa20.77■□□□□ 0.92
USH1C-209ENST00000530700 PHF23Q9BUL5 403 aaPredicted RBP20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms