RNA–Protein interactions for RNA: ENST00000530567.1

CAPN1-220, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 1,415 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-220ENST00000530567 SHROOM2Q13796 1616 aa35.3■■■■□ 3.24
CAPN1-220ENST00000530567 ARHGEF11O15085 1522 aa35.26■■■■□ 3.23
CAPN1-220ENST00000530567 CTTNBP2Q8WZ74 1663 aa35.22■■■■□ 3.23
CAPN1-220ENST00000530567 IQGAP2Q13576 1575 aa35.22■■■■□ 3.23
CAPN1-220ENST00000530567 RIMBP3CA6NJZ7 1639 aa35.22■■■■□ 3.23
CAPN1-220ENST00000530567 RIMBP3BA6NNM3 1639 aa35.22■■■■□ 3.23
CAPN1-220ENST00000530567 RIMBP3Q9UFD9 1639 aa35.22■■■■□ 3.23
CAPN1-220ENST00000530567 JPH4Q96JJ6 628 aa35.17■■■■□ 3.22
CAPN1-220ENST00000530567 GOLGA3Q08378 1498 aa35.15■■■■□ 3.22
CAPN1-220ENST00000530567 ERCC6L2Q5T890 1561 aa35.15■■■■□ 3.22
CAPN1-220ENST00000530567 PRG4Q92954 1404 aaPredicted RBP35.1■■■■□ 3.21
CAPN1-220ENST00000530567 UGGT2Q9NYU1 1516 aa35.06■■■■□ 3.2
CAPN1-220ENST00000530567 EHMT2Q96KQ7 1210 aa35.04■■■■□ 3.2
CAPN1-220ENST00000530567 ARAP1Q96P48 1450 aa35.03■■■■□ 3.2
CAPN1-220ENST00000530567 DISP1Q96F81 1524 aa34.98■■■■□ 3.19
CAPN1-220ENST00000530567 UBTFP17480 764 aaKnown RBP34.93■■■■□ 3.18
CAPN1-220ENST00000530567 KIAA0556O60303 1618 aa34.9■■■■□ 3.18
CAPN1-220ENST00000530567 CARMIL2Q6F5E8 1435 aa34.89■■■■□ 3.18
CAPN1-220ENST00000530567 SAMD9Q5K651 1589 aa34.83■■■■□ 3.17
CAPN1-220ENST00000530567 CYB5RLQ6IPT4 315 aa34.82■■■■□ 3.17
CAPN1-220ENST00000530567 TNIKQ9UKE5 1360 aa34.78■■■■□ 3.16
CAPN1-220ENST00000530567 RANGAP1P46060 587 aaPredicted RBP34.72■■■■□ 3.15
CAPN1-220ENST00000530567 EFCAB5A4FU69 1503 aa34.72■■■■□ 3.15
CAPN1-220ENST00000530567 LOC105371045A0A1W2PR82 267 aa34.72■■■■□ 3.15
CAPN1-220ENST00000530567 PTPRGP23470 1445 aa34.71■■■■□ 3.15
CAPN1-220ENST00000530567 P3H3Q8IVL6 736 aa34.64■■■■□ 3.14
CAPN1-220ENST00000530567 ARHGAP35Q9NRY4 1499 aa34.64■■■■□ 3.14
CAPN1-220ENST00000530567 TTBK1Q5TCY1 1321 aaPredicted RBP34.61■■■■□ 3.13
CAPN1-220ENST00000530567 FHOD3Q2V2M9 1422 aa34.61■■■■□ 3.13
CAPN1-220ENST00000530567 ADCY10Q96PN6 1610 aa34.57■■■■□ 3.13
CAPN1-220ENST00000530567 CLIP1P30622 1438 aa34.53■■■■□ 3.12
CAPN1-220ENST00000530567 UACAQ9BZF9 1416 aa34.52■■■■□ 3.12
CAPN1-220ENST00000530567 PLB1Q6P1J6 1458 aa34.51■■■■□ 3.11
CAPN1-220ENST00000530567 ABCA8O94911 1581 aa34.51■■■■□ 3.11
CAPN1-220ENST00000530567 CEP162Q5TB80 1403 aa34.5■■■■□ 3.11
CAPN1-220ENST00000530567 UHRF1BP1LA0JNW5 1464 aa34.49■■■■□ 3.11
CAPN1-220ENST00000530567 ABCC2Q92887 1545 aa34.49■■■■□ 3.11
CAPN1-220ENST00000530567 RAPGEF6Q8TEU7 1601 aa34.37■■■■□ 3.09
CAPN1-220ENST00000530567 FMN1Q68DA7 1419 aa34.34■■■■□ 3.09
CAPN1-220ENST00000530567 KDM5BQ9UGL1 1544 aa34.33■■■■□ 3.09
CAPN1-220ENST00000530567 NUP153P49790 1475 aaKnown RBP34.28■■■■□ 3.08
CAPN1-220ENST00000530567 ZCCHC11Q5TAX3 1644 aaKnown RBP34.27■■■■□ 3.08
CAPN1-220ENST00000530567 MAPKBP1O60336 1514 aa34.25■■■■□ 3.07
CAPN1-220ENST00000530567 NPM1P06748 294 aaKnown RBP eCLIP34.22■■■■□ 3.07
CAPN1-220ENST00000530567 PCF11O94913 1555 aaKnown RBP34.21■■■■□ 3.07
CAPN1-220ENST00000530567 ATP10BO94823 1461 aa34.19■■■■□ 3.06
CAPN1-220ENST00000530567 HECW1Q76N89 1606 aa34.17■■■■□ 3.06
CAPN1-220ENST00000530567 CASKIN1Q8WXD9 1431 aa34.16■■■■□ 3.06
CAPN1-220ENST00000530567 ARID3CA6NKF2 412 aa34.14■■■■□ 3.06
CAPN1-220ENST00000530567 ASXL2Q76L83 1435 aa34.13■■■■□ 3.05
CAPN1-220ENST00000530567 FYCO1Q9BQS8 1478 aa34.11■■■■□ 3.05
CAPN1-220ENST00000530567 LRRIQ1Q96JM4 1722 aa34.09■■■■□ 3.05
CAPN1-220ENST00000530567 EPRSP07814 1512 aaKnown RBP34.08■■■■□ 3.05
CAPN1-220ENST00000530567 CDK13Q14004 1512 aaKnown RBP34.08■■■■□ 3.05
CAPN1-220ENST00000530567 VPS8Q8N3P4 1428 aa34.06■■■■□ 3.04
CAPN1-220ENST00000530567 WDR7Q9Y4E6 1490 aa34.03■■■■□ 3.04
CAPN1-220ENST00000530567 ATP1B4Q9UN42 357 aaPredicted RBP34.02■■■■□ 3.04
CAPN1-220ENST00000530567 ABCC10Q5T3U5 1492 aa34.01■■■■□ 3.04
CAPN1-220ENST00000530567 DIP2BQ9P265 1576 aa34.01■■■■□ 3.03
CAPN1-220ENST00000530567 KIF13AQ9H1H9 1805 aa33.97■■■■□ 3.03
CAPN1-220ENST00000530567 CCDC18Q5T9S5 1454 aa33.96■■■■□ 3.03
CAPN1-220ENST00000530567 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.95■■■■□ 3.02
CAPN1-220ENST00000530567 HNRNPUL2Q1KMD3 747 aaKnown RBP33.95■■■■□ 3.02
CAPN1-220ENST00000530567 TRHP20396 242 aaPredicted RBP33.92■■■■□ 3.02
CAPN1-220ENST00000530567 GLI2P10070 1586 aa33.88■■■■□ 3.01
CAPN1-220ENST00000530567 FAM69CQ0P6D2 419 aa33.86■■■■□ 3.01
CAPN1-220ENST00000530567 PLEKHD1A6NEE1 506 aa33.84■■■■□ 3.01
CAPN1-220ENST00000530567 MAGI3Q5TCQ9 1506 aa33.83■■■■□ 3.01
CAPN1-220ENST00000530567 KCNH8Q96L42 1107 aa33.8■■■■□ 3
CAPN1-220ENST00000530567 CFAP43Q8NDM7 1665 aa33.79■■■■□ 3
CAPN1-220ENST00000530567 TROQ12816 1431 aaPredicted RBP33.78■■■■□ 3
CAPN1-220ENST00000530567 CDK11AQ9UQ88 783 aaPredicted RBP33.77■■■■□ 3
CAPN1-220ENST00000530567 MAP3K4Q9Y6R4 1608 aa33.77■■■■□ 3
CAPN1-220ENST00000530567 TIAM1Q13009 1591 aa33.75■■■□□ 2.99
CAPN1-220ENST00000530567 ABCA9Q8IUA7 1624 aa33.74■■■□□ 2.99
CAPN1-220ENST00000530567 KIF14Q15058 1648 aa33.71■■■□□ 2.99
CAPN1-220ENST00000530567 MAP3K1Q13233 1512 aa33.71■■■□□ 2.99
CAPN1-220ENST00000530567 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.69■■■□□ 2.984e-8■■■■□ 20.7
CAPN1-220ENST00000530567 PPRC1Q5VV67 1664 aaKnown RBP33.68■■■□□ 2.98
CAPN1-220ENST00000530567 TTC37Q6PGP7 1564 aa33.67■■■□□ 2.98
CAPN1-220ENST00000530567 TSPOAP1O95153 1857 aa33.65■■■□□ 2.98
CAPN1-220ENST00000530567 EHBP1L1Q8N3D4 1523 aa33.64■■■□□ 2.98
CAPN1-220ENST00000530567 CD109Q6YHK3 1445 aa33.63■■■□□ 2.97
CAPN1-220ENST00000530567 MTUS2Q5JR59 1369 aa33.62■■■□□ 2.97
CAPN1-220ENST00000530567 LRRC9Q6ZRR7 1453 aa33.59■■■□□ 2.97
CAPN1-220ENST00000530567 KANK4Q5T7N3 995 aaPredicted RBP33.53■■■□□ 2.96
CAPN1-220ENST00000530567 TEX14Q8IWB6 1497 aa33.5■■■□□ 2.95
CAPN1-220ENST00000530567 APLP2Q06481 763 aa33.49■■■□□ 2.95
CAPN1-220ENST00000530567 MYO5CQ9NQX4 1742 aa33.48■■■□□ 2.95
CAPN1-220ENST00000530567 PLCH2O75038 1416 aa33.46■■■□□ 2.95
CAPN1-220ENST00000530567 SUPT6HQ7KZ85 1726 aaKnown RBP33.46■■■□□ 2.95
CAPN1-220ENST00000530567 ARAP3Q8WWN8 1544 aa33.44■■■□□ 2.94
CAPN1-220ENST00000530567 CDC42BPAQ5VT25 1732 aa33.44■■■□□ 2.94
CAPN1-220ENST00000530567 NCOA2Q15596 1464 aa33.43■■■□□ 2.94
CAPN1-220ENST00000530567 PREX2Q70Z35 1606 aa33.43■■■□□ 2.94
CAPN1-220ENST00000530567 GPATCH8Q9UKJ3 1502 aaKnown RBP33.4■■■□□ 2.94
CAPN1-220ENST00000530567 CDC42BPBQ9Y5S2 1711 aa33.4■■■□□ 2.94
CAPN1-220ENST00000530567 FANCAO15360 1455 aa33.38■■■□□ 2.93
CAPN1-220ENST00000530567 NEO1Q92859 1461 aa33.38■■■□□ 2.93
CAPN1-220ENST00000530567 CFAP74Q9C0B2 1584 aa33.35■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms