RNA–Protein interactions for RNA: ENST00000530277.5

SCN3B-206, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 3,984 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-206ENST00000530277 CARMIL1Q5VZK9 1371 aa17.11■□□□□ 0.33
SCN3B-206ENST00000530277 SENP3Q9H4L4 574 aaPredicted RBP17.1■□□□□ 0.33
SCN3B-206ENST00000530277 SMARCA4P51532 1647 aa17.1■□□□□ 0.33
SCN3B-206ENST00000530277 CDK11AQ9UQ88 783 aaPredicted RBP17.08■□□□□ 0.32
SCN3B-206ENST00000530277 MRS2Q9HD23 443 aa17.06■□□□□ 0.32
SCN3B-206ENST00000530277 ATAD2BQ9ULI0 1458 aa17.05■□□□□ 0.32
SCN3B-206ENST00000530277 SUPT16HQ9Y5B9 1047 aaKnown RBP17.04■□□□□ 0.32
SCN3B-206ENST00000530277 TDRD9Q8NDG6 1382 aaKnown RBP17.04■□□□□ 0.32
SCN3B-206ENST00000530277 SMARCA2P51531 1590 aa17.03■□□□□ 0.32
SCN3B-206ENST00000530277 RAB3GAP2Q9H2M9 1393 aa17.02■□□□□ 0.32
SCN3B-206ENST00000530277 CHMP7Q8WUX9 453 aaPredicted RBP17.01■□□□□ 0.31
SCN3B-206ENST00000530277 RGL3Q3MIN7 710 aa16.99■□□□□ 0.31
SCN3B-206ENST00000530277 BCL11AQ9H165 835 aa16.99■□□□□ 0.31
SCN3B-206ENST00000530277 NPM2Q86SE8 214 aaKnown RBP16.99■□□□□ 0.31
SCN3B-206ENST00000530277 EIF4G2P78344 907 aaKnown RBP eCLIP16.96■□□□□ 0.31
SCN3B-206ENST00000530277 CLSPNQ9HAW4 1339 aa16.95■□□□□ 0.3
SCN3B-206ENST00000530277 DHX57Q6P158 1386 aaKnown RBP16.94■□□□□ 0.3
SCN3B-206ENST00000530277 FHOD3Q2V2M9 1422 aa16.93■□□□□ 0.3
SCN3B-206ENST00000530277 DAXXQ9UER7 740 aaPredicted RBP16.92■□□□□ 0.3
SCN3B-206ENST00000530277 TMC1Q8TDI8 760 aa16.91■□□□□ 0.3
SCN3B-206ENST00000530277 CHGAP10645 457 aaKnown RBP16.9■□□□□ 0.3
SCN3B-206ENST00000530277 CFDP1Q9UEE9 299 aaPredicted RBP16.88■□□□□ 0.29
SCN3B-206ENST00000530277 SETD5Q9C0A6 1442 aa16.88■□□□□ 0.29
SCN3B-206ENST00000530277 EIF4G1Q04637 1599 aaKnown RBP16.87■□□□□ 0.29
SCN3B-206ENST00000530277 TSPY4P0CV99 314 aa16.87■□□□□ 0.29
SCN3B-206ENST00000530277 TSPY10P0CW01 314 aa16.87■□□□□ 0.29
SCN3B-206ENST00000530277 SYNJ1O43426 1573 aa16.82■□□□□ 0.28
SCN3B-206ENST00000530277 NBR1Q14596 966 aa16.82■□□□□ 0.28
SCN3B-206ENST00000530277 HSPA5P11021 654 aaKnown RBP16.81■□□□□ 0.28
SCN3B-206ENST00000530277 RTL5Q5HYW3 569 aaPredicted RBP16.81■□□□□ 0.28
SCN3B-206ENST00000530277 CCDC136Q96JN2 1154 aa16.81■□□□□ 0.28
SCN3B-206ENST00000530277 PPP1R15AO75807 674 aaPredicted RBP16.8■□□□□ 0.28
SCN3B-206ENST00000530277 B4GALNT3Q6L9W6 998 aa16.8■□□□□ 0.28
SCN3B-206ENST00000530277 FHAD1B1AJZ9 1412 aa16.79■□□□□ 0.28
SCN3B-206ENST00000530277 CADPSQ9ULU8 1353 aa16.79■□□□□ 0.28
SCN3B-206ENST00000530277 PLEKHD1A6NEE1 506 aa16.77■□□□□ 0.27
SCN3B-206ENST00000530277 IGF1RP08069 1367 aa16.76■□□□□ 0.27
SCN3B-206ENST00000530277 KIF21BO75037 1637 aa16.76■□□□□ 0.27
SCN3B-206ENST00000530277 ARAP1Q96P48 1450 aa16.74■□□□□ 0.27
SCN3B-206ENST00000530277 ARHGAP35Q9NRY4 1499 aa16.74■□□□□ 0.27
SCN3B-206ENST00000530277 CARD11Q9BXL7 1154 aa16.74■□□□□ 0.27
SCN3B-206ENST00000530277 ANP32EQ9BTT0 268 aa16.73■□□□□ 0.27
SCN3B-206ENST00000530277 RAD54L2Q9Y4B4 1467 aa16.73■□□□□ 0.27
SCN3B-206ENST00000530277 L3MBTL2Q969R5 705 aa16.72■□□□□ 0.27
SCN3B-206ENST00000530277 PHLDB1Q86UU1 1377 aa16.71■□□□□ 0.27
SCN3B-206ENST00000530277 MPHOSPH9Q99550 1183 aa16.7■□□□□ 0.26
SCN3B-206ENST00000530277 CANXP27824 592 aaKnown RBP16.7■□□□□ 0.26
SCN3B-206ENST00000530277 PLPPR3Q6T4P5 718 aa16.7■□□□□ 0.26
SCN3B-206ENST00000530277 DNAJC5BQ9UF47 199 aa16.7■□□□□ 0.26
SCN3B-206ENST00000530277 DCAF11Q8TEB1 546 aa16.69■□□□□ 0.26
SCN3B-206ENST00000530277 TSHZ2Q9NRE2 1034 aa16.68■□□□□ 0.26
SCN3B-206ENST00000530277 PKD2Q13563 968 aa16.67■□□□□ 0.26
SCN3B-206ENST00000530277 ANP32AP39687 249 aaKnown RBP16.66■□□□□ 0.26
SCN3B-206ENST00000530277 CC2D1BQ5T0F9 858 aaKnown RBP16.66■□□□□ 0.26
SCN3B-206ENST00000530277 ZNF644Q9H582 1327 aaPredicted RBP16.64■□□□□ 0.25
SCN3B-206ENST00000530277 FGD5Q6ZNL6 1462 aa16.64■□□□□ 0.25
SCN3B-206ENST00000530277 RBM19Q9Y4C8 960 aaKnown RBP16.62■□□□□ 0.25
SCN3B-206ENST00000530277 FANCD2Q9BXW9 1451 aa16.61■□□□□ 0.25
SCN3B-206ENST00000530277 TNNT2P45379 298 aaPredicted RBP16.59■□□□□ 0.25
SCN3B-206ENST00000530277 NEUROD2Q15784 382 aa16.57■□□□□ 0.24
SCN3B-206ENST00000530277 NESP48681 1621 aa16.56■□□□□ 0.24
SCN3B-206ENST00000530277 HNRNPMP52272 730 aaKnown RBP eCLIP16.56■□□□□ 0.24
SCN3B-206ENST00000530277 FMN1Q68DA7 1419 aa16.55■□□□□ 0.24
SCN3B-206ENST00000530277 ERCC6Q03468 1493 aa16.55■□□□□ 0.24
SCN3B-206ENST00000530277 WDR43Q15061 677 aaKnown RBP eCLIP16.55■□□□□ 0.24
SCN3B-206ENST00000530277 CCER2I3L3R5 266 aa16.54■□□□□ 0.24
SCN3B-206ENST00000530277 SLC24A1O60721 1099 aa16.54■□□□□ 0.24
SCN3B-206ENST00000530277 TIMELESSQ9UNS1 1208 aa16.53■□□□□ 0.24
SCN3B-206ENST00000530277 CUX1P39880 1505 aa16.51■□□□□ 0.23
SCN3B-206ENST00000530277 ARXQ96QS3 562 aa16.51■□□□□ 0.23
SCN3B-206ENST00000530277 PRXQ9BXM0 1461 aa16.51■□□□□ 0.23
SCN3B-206ENST00000530277 ZBTB47Q9UFB7 747 aaPredicted RBP16.5■□□□□ 0.23
SCN3B-206ENST00000530277 PPP4R2Q9NY27 417 aa16.49■□□□□ 0.23
SCN3B-206ENST00000530277 NUP155O75694 1391 aa16.49■□□□□ 0.23
SCN3B-206ENST00000530277 BICRAQ9NZM4 1560 aa16.49■□□□□ 0.23
SCN3B-206ENST00000530277 NCAPD3P42695 1498 aa16.48■□□□□ 0.23
SCN3B-206ENST00000530277 PDS5BQ9NTI5 1447 aa16.48■□□□□ 0.23
SCN3B-206ENST00000530277 LRRC9Q6ZRR7 1453 aa16.47■□□□□ 0.23
SCN3B-206ENST00000530277 CCDC18Q5T9S5 1454 aa16.46■□□□□ 0.23
SCN3B-206ENST00000530277 STAG3Q9UJ98 1225 aa16.46■□□□□ 0.23
SCN3B-206ENST00000530277 CCDC184Q52MB2 194 aa16.45■□□□□ 0.22
SCN3B-206ENST00000530277 AQRO60306 1485 aaKnown RBP eCLIP16.45■□□□□ 0.22
SCN3B-206ENST00000530277 PLEKHG5O94827 1062 aa16.45■□□□□ 0.22
SCN3B-206ENST00000530277 NPM1P06748 294 aaKnown RBP eCLIP16.44■□□□□ 0.22
SCN3B-206ENST00000530277 RTN4Q9NQC3 1192 aaKnown RBP16.44■□□□□ 0.22
SCN3B-206ENST00000530277 ST20-MTHFSA0A0A6YYL1 179 aa16.44■□□□□ 0.22
SCN3B-206ENST00000530277 SAFB2Q14151 953 aaKnown RBP eCLIP16.44■□□□□ 0.22
SCN3B-206ENST00000530277 LAS1LQ9Y4W2 734 aaKnown RBP16.44■□□□□ 0.22
SCN3B-206ENST00000530277 JPH4Q96JJ6 628 aa16.43■□□□□ 0.22
SCN3B-206ENST00000530277 KNSTRNQ9Y448 316 aa16.43■□□□□ 0.22
SCN3B-206ENST00000530277 CFTRP13569 1480 aa16.42■□□□□ 0.22
SCN3B-206ENST00000530277 RGS3P49796 1198 aa16.42■□□□□ 0.22
SCN3B-206ENST00000530277 FGD6Q6ZV73 1430 aa16.41■□□□□ 0.22
SCN3B-206ENST00000530277 PRKRIP1Q9H875 184 aaPredicted RBP16.41■□□□□ 0.22
SCN3B-206ENST00000530277 EIF5BO60841 1220 aaKnown RBP16.4■□□□□ 0.22
SCN3B-206ENST00000530277 RRBP1Q9P2E9 1410 aaKnown RBP16.4■□□□□ 0.22
SCN3B-206ENST00000530277 WASHC2AQ641Q2 1341 aa16.4■□□□□ 0.22
SCN3B-206ENST00000530277 TOP2BQ02880 1626 aa16.38■□□□□ 0.21
SCN3B-206ENST00000530277 PPM1GO15355 546 aaPredicted RBP16.38■□□□□ 0.21
SCN3B-206ENST00000530277 GAPVD1Q14C86 1478 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms