RNA–Protein interactions for RNA: ENST00000528930.5

SSBP3-212, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best)

Gene SSBP3, Length 862 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-212ENST00000528930 HECW2Q9P2P5 1572 aa16.32■□□□□ 0.2
SSBP3-212ENST00000528930 DNMBPQ6XZF7 1577 aa16.31■□□□□ 0.2
SSBP3-212ENST00000528930 ABCC8Q09428 1581 aa16.3■□□□□ 0.2
SSBP3-212ENST00000528930 SNAPC4Q5SXM2 1469 aa16.26■□□□□ 0.19
SSBP3-212ENST00000528930 WDR97A6NE52 1622 aa16.25■□□□□ 0.19
SSBP3-212ENST00000528930 FBXO41Q8TF61 875 aa16.24■□□□□ 0.19
SSBP3-212ENST00000528930 KDM6BO15054 1643 aa16.23■□□□□ 0.19
SSBP3-212ENST00000528930 ABCB7O75027 752 aa16.23■□□□□ 0.19
SSBP3-212ENST00000528930 MAGI1Q96QZ7 1491 aaPredicted RBP16.21■□□□□ 0.19
SSBP3-212ENST00000528930 POTEHQ6S545 545 aa16.2■□□□□ 0.18
SSBP3-212ENST00000528930 POLA1P09884 1462 aaPredicted RBP16.19■□□□□ 0.18
SSBP3-212ENST00000528930 LMTK3Q96Q04 1460 aa16.19■□□□□ 0.18
SSBP3-212ENST00000528930 TOP2AP11388 1531 aaKnown RBP16.18■□□□□ 0.18
SSBP3-212ENST00000528930 SYNJ2O15056 1496 aa16.16■□□□□ 0.18
SSBP3-212ENST00000528930 DIP2BQ9P265 1576 aa16.12■□□□□ 0.17
SSBP3-212ENST00000528930 ADGRL1O94910 1474 aa16.11■□□□□ 0.17
SSBP3-212ENST00000528930 ABCC10Q5T3U5 1492 aa16.1■□□□□ 0.17
SSBP3-212ENST00000528930 CHMP7Q8WUX9 453 aaPredicted RBP16.1■□□□□ 0.17
SSBP3-212ENST00000528930 ZNF219Q9P2Y4 722 aaPredicted RBP16.09■□□□□ 0.17
SSBP3-212ENST00000528930 RAD54L2Q9Y4B4 1467 aa16.09■□□□□ 0.17
SSBP3-212ENST00000528930 TDRD9Q8NDG6 1382 aaKnown RBP16.08■□□□□ 0.16
SSBP3-212ENST00000528930 PBRM1Q86U86 1689 aa16.08■□□□□ 0.16
SSBP3-212ENST00000528930 SOCS7O14512 581 aa16.07■□□□□ 0.16
SSBP3-212ENST00000528930 APLP2Q06481 763 aa16.07■□□□□ 0.16
SSBP3-212ENST00000528930 CEP170Q5SW79 1584 aa16.06■□□□□ 0.16
SSBP3-212ENST00000528930 SHROOM2Q13796 1616 aa16.05■□□□□ 0.16
SSBP3-212ENST00000528930 GRIN2BQ13224 1484 aa16.05■□□□□ 0.16
SSBP3-212ENST00000528930 TSPOAP1O95153 1857 aa16.05■□□□□ 0.16
SSBP3-212ENST00000528930 MAPKBP1O60336 1514 aa16.04■□□□□ 0.16
SSBP3-212ENST00000528930 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.02■□□□□ 0.16
SSBP3-212ENST00000528930 HNRNPUL2Q1KMD3 747 aaKnown RBP16.02■□□□□ 0.16
SSBP3-212ENST00000528930 SOGA1O94964 1423 aa16■□□□□ 0.15
SSBP3-212ENST00000528930 FAM69CQ0P6D2 419 aa15.97■□□□□ 0.15
SSBP3-212ENST00000528930 SAMD1Q6SPF0 538 aaPredicted RBP15.95■□□□□ 0.14
SSBP3-212ENST00000528930 ILDR2Q71H61 639 aa15.95■□□□□ 0.14
SSBP3-212ENST00000528930 CCDC88BA6NC98 1476 aa15.91■□□□□ 0.14
SSBP3-212ENST00000528930 FGD5Q6ZNL6 1462 aa15.91■□□□□ 0.14
SSBP3-212ENST00000528930 PPRC1Q5VV67 1664 aaKnown RBP15.89■□□□□ 0.13
SSBP3-212ENST00000528930 NUP160Q12769 1436 aa15.88■□□□□ 0.13
SSBP3-212ENST00000528930 ABCA5Q8WWZ7 1642 aa15.87■□□□□ 0.13
SSBP3-212ENST00000528930 GRIN2AQ12879 1464 aa15.87■□□□□ 0.13
SSBP3-212ENST00000528930 ADCY10Q96PN6 1610 aa15.85■□□□□ 0.13
SSBP3-212ENST00000528930 TOP2BQ02880 1626 aa15.8■□□□□ 0.12
SSBP3-212ENST00000528930 ADAMTS12P58397 1594 aa15.8■□□□□ 0.12
SSBP3-212ENST00000528930 DISP3Q9P2K9 1392 aa15.79■□□□□ 0.12
SSBP3-212ENST00000528930 MYCNP04198 464 aaPredicted RBP15.76■□□□□ 0.11
SSBP3-212ENST00000528930 CUX1P39880 1505 aa15.75■□□□□ 0.11
SSBP3-212ENST00000528930 POLA2Q14181 598 aa15.75■□□□□ 0.11
SSBP3-212ENST00000528930 SPATA31D1Q6ZQQ2 1576 aa15.74■□□□□ 0.11
SSBP3-212ENST00000528930 PRG4Q92954 1404 aaPredicted RBP15.72■□□□□ 0.11
SSBP3-212ENST00000528930 NPM1P06748 294 aaKnown RBP eCLIP15.7■□□□□ 0.1
SSBP3-212ENST00000528930 COL17A1Q9UMD9 1497 aaPredicted RBP15.7■□□□□ 0.1
SSBP3-212ENST00000528930 GLI2P10070 1586 aa15.7■□□□□ 0.1
SSBP3-212ENST00000528930 ABCA10Q8WWZ4 1543 aa15.69■□□□□ 0.1
SSBP3-212ENST00000528930 RBM42Q9BTD8 480 aaKnown RBP15.66■□□□□ 0.1
SSBP3-212ENST00000528930 RUSC2Q8N2Y8 1516 aa15.63■□□□□ 0.09
SSBP3-212ENST00000528930 MAP3K4Q9Y6R4 1608 aa15.61■□□□□ 0.09
SSBP3-212ENST00000528930 FHAD1B1AJZ9 1412 aa15.59■□□□□ 0.09
SSBP3-212ENST00000528930 PCF11O94913 1555 aaKnown RBP15.58■□□□□ 0.08
SSBP3-212ENST00000528930 ATF5Q9Y2D1 282 aaPredicted RBP15.57■□□□□ 0.08
SSBP3-212ENST00000528930 SLC4A1APQ9BWU0 796 aaKnown RBP15.56■□□□□ 0.08
SSBP3-212ENST00000528930 KIF21BO75037 1637 aa15.56■□□□□ 0.08
SSBP3-212ENST00000528930 JPH4Q96JJ6 628 aa15.54■□□□□ 0.08
SSBP3-212ENST00000528930 ADAMTSL3P82987 1691 aa15.53■□□□□ 0.08
SSBP3-212ENST00000528930 TEX14Q8IWB6 1497 aa15.52■□□□□ 0.07
SSBP3-212ENST00000528930 CUL7Q14999 1698 aa15.51■□□□□ 0.07
SSBP3-212ENST00000528930 CHRDL2Q6WN34 429 aa15.5■□□□□ 0.07
SSBP3-212ENST00000528930 PLB1Q6P1J6 1458 aa15.5■□□□□ 0.07
SSBP3-212ENST00000528930 ERICH3Q5RHP9 1530 aa15.49■□□□□ 0.07
SSBP3-212ENST00000528930 PTPRMP28827 1452 aa15.49■□□□□ 0.07
SSBP3-212ENST00000528930 CERKQ8TCT0 537 aa15.49■□□□□ 0.07
SSBP3-212ENST00000528930 ASXL2Q76L83 1435 aa15.48■□□□□ 0.07
SSBP3-212ENST00000528930 FOXD4L1Q9NU39 408 aa15.47■□□□□ 0.07
SSBP3-212ENST00000528930 ABCC2Q92887 1545 aa15.47■□□□□ 0.07
SSBP3-212ENST00000528930 KIAA0586Q9BVV6 1533 aa15.45■□□□□ 0.06
SSBP3-212ENST00000528930 EPRSP07814 1512 aaKnown RBP15.42■□□□□ 0.06
SSBP3-212ENST00000528930 BCORL1Q5H9F3 1711 aa15.37■□□□□ 0.05
SSBP3-212ENST00000528930 MADDQ8WXG6 1647 aa15.35■□□□□ 0.05
SSBP3-212ENST00000528930 UHRF1BP1LA0JNW5 1464 aa15.33■□□□□ 0.05
SSBP3-212ENST00000528930 WRNQ14191 1432 aaPredicted RBP eCLIP15.31■□□□□ 0.04
SSBP3-212ENST00000528930 CFAP43Q8NDM7 1665 aa15.31■□□□□ 0.04
SSBP3-212ENST00000528930 BIVM-ERCC5R4GMW8 1640 aa15.3■□□□□ 0.04
SSBP3-212ENST00000528930 ZCCHC11Q5TAX3 1644 aaKnown RBP15.29■□□□□ 0.04
SSBP3-212ENST00000528930 PTPRGP23470 1445 aa15.29■□□□□ 0.04
SSBP3-212ENST00000528930 MAGI3Q5TCQ9 1506 aa15.28■□□□□ 0.04
SSBP3-212ENST00000528930 RIMS1Q86UR5 1692 aaKnown RBP15.28■□□□□ 0.04
SSBP3-212ENST00000528930 KDM5BQ9UGL1 1544 aa15.27■□□□□ 0.04
SSBP3-212ENST00000528930 AKT1S1Q96B36 256 aa15.27■□□□□ 0.04
SSBP3-212ENST00000528930 ZBTB22O15209 634 aa15.26■□□□□ 0.03
SSBP3-212ENST00000528930 ZBTB12Q9Y330 459 aaPredicted RBP15.25■□□□□ 0.03
SSBP3-212ENST00000528930 HSPA2P54652 639 aa15.23■□□□□ 0.03
SSBP3-212ENST00000528930 SUPT5HO00267 1087 aaKnown RBP15.21■□□□□ 0.03
SSBP3-212ENST00000528930 REM2Q8IYK8 340 aaPredicted RBP15.2■□□□□ 0.02
SSBP3-212ENST00000528930 ARAP3Q8WWN8 1544 aa15.2■□□□□ 0.02
SSBP3-212ENST00000528930 STRCQ7RTU9 1775 aa15.2■□□□□ 0.02
SSBP3-212ENST00000528930 TNIKQ9UKE5 1360 aa15.2■□□□□ 0.02
SSBP3-212ENST00000528930 UACAQ9BZF9 1416 aa15.18■□□□□ 0.02
SSBP3-212ENST00000528930 WDR7Q9Y4E6 1490 aa15.18■□□□□ 0.02
SSBP3-212ENST00000528930 IQSEC2Q5JU85 1478 aa15.15■□□□□ 0.02
SSBP3-212ENST00000528930 CD109Q6YHK3 1445 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 480.9 ms