RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, human

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS28-208	ENST00000527797	CTTNBP2	Q8WZ74	1663 aa		33.22	■■■□□ 2.91
VPS28-208	ENST00000527797	FBLN2	P98095	1184 aa		33.18	■■■□□ 2.9
VPS28-208	ENST00000527797	ARHGAP35	Q9NRY4	1499 aa		33.14	■■■□□ 2.9
VPS28-208	ENST00000527797	ARAP1	Q96P48	1450 aa		33.08	■■■□□ 2.89
VPS28-208	ENST00000527797	VPS8	Q8N3P4	1428 aa		33.07	■■■□□ 2.88
VPS28-208	ENST00000527797	KIAA0586	Q9BVV6	1533 aa		33.06	■■■□□ 2.88
VPS28-208	ENST00000527797	IQGAP2	Q13576	1575 aa		33.03	■■■□□ 2.88
VPS28-208	ENST00000527797	EFCAB5	A4FU69	1503 aa		33.03	■■■□□ 2.88
VPS28-208	ENST00000527797	NUP160	Q12769	1436 aa		33.01	■■■□□ 2.87
VPS28-208	ENST00000527797	CEP170	Q5SW79	1584 aa		32.98	■■■□□ 2.87
VPS28-208	ENST00000527797	P3H3	Q8IVL6	736 aa		32.96	■■■□□ 2.87
VPS28-208	ENST00000527797	SAMD9	Q5K651	1589 aa		32.91	■■■□□ 2.86
VPS28-208	ENST00000527797	UGGT2	Q9NYU1	1516 aa		32.89	■■■□□ 2.86
VPS28-208	ENST00000527797	FHOD3	Q2V2M9	1422 aa		32.89	■■■□□ 2.86
VPS28-208	ENST00000527797	CHD1	O14646	1710 aa		32.89	■■■□□ 2.86
VPS28-208	ENST00000527797	APLP2	Q06481	763 aa		32.82	■■■□□ 2.84
VPS28-208	ENST00000527797	JPH4	Q96JJ6	628 aa		32.79	■■■□□ 2.84
VPS28-208	ENST00000527797	FMN1	Q68DA7	1419 aa		32.77	■■■□□ 2.84
VPS28-208	ENST00000527797	PPARGC1B	Q86YN6	1023 aa	Known RBP	32.76	■■■□□ 2.83
VPS28-208	ENST00000527797	DISP1	Q96F81	1524 aa		32.73	■■■□□ 2.83
VPS28-208	ENST00000527797	KIAA0556	O60303	1618 aa		32.7	■■■□□ 2.82
VPS28-208	ENST00000527797	CARMIL2	Q6F5E8	1435 aa		32.68	■■■□□ 2.82
VPS28-208	ENST00000527797	CASKIN1	Q8WXD9	1431 aa		32.65	■■■□□ 2.82
VPS28-208	ENST00000527797	PCF11	O94913	1555 aa	Known RBP	32.63	■■■□□ 2.81
VPS28-208	ENST00000527797	FYCO1	Q9BQS8	1478 aa		32.62	■■■□□ 2.81
VPS28-208	ENST00000527797	TRIM26	Q12899	539 aa	Predicted RBP	32.6	■■■□□ 2.81
VPS28-208	ENST00000527797	ATP1B4	Q9UN42	357 aa	Predicted RBP	32.6	■■■□□ 2.81
VPS28-208	ENST00000527797	PRG4	Q92954	1404 aa	Predicted RBP	32.58	■■■□□ 2.81
VPS28-208	ENST00000527797	CLASP1	Q7Z460	1538 aa		32.58	■■■□□ 2.81
VPS28-208	ENST00000527797	TTBK1	Q5TCY1	1321 aa	Predicted RBP	32.56	■■■□□ 2.8
VPS28-208	ENST00000527797	MAP3K1	Q13233	1512 aa		32.54	■■■□□ 2.8
VPS28-208	ENST00000527797	SHROOM2	Q13796	1616 aa		32.54	■■■□□ 2.8
VPS28-208	ENST00000527797	OSCAR	Q8IYS5	282 aa		32.49	■■■□□ 2.79
VPS28-208	ENST00000527797	TIAM1	Q13009	1591 aa		32.48	■■■□□ 2.79
VPS28-208	ENST00000527797	KANK4	Q5T7N3	995 aa	Predicted RBP	32.48	■■■□□ 2.79
VPS28-208	ENST00000527797	PCGF6	Q9BYE7	350 aa		32.48	■■■□□ 2.79
VPS28-208	ENST00000527797	HECW1	Q76N89	1606 aa		32.41	■■■□□ 2.78
VPS28-208	ENST00000527797	CFAP43	Q8NDM7	1665 aa		32.39	■■■□□ 2.78
VPS28-208	ENST00000527797	PTPRG	P23470	1445 aa		32.37	■■■□□ 2.77
VPS28-208	ENST00000527797	CCDC18	Q5T9S5	1454 aa		32.36	■■■□□ 2.77
VPS28-208	ENST00000527797	LRRC9	Q6ZRR7	1453 aa		32.36	■■■□□ 2.77
VPS28-208	ENST00000527797	RAPGEF6	Q8TEU7	1601 aa		32.34	■■■□□ 2.77
VPS28-208	ENST00000527797	PLB1	Q6P1J6	1458 aa		32.32	■■■□□ 2.76
VPS28-208	ENST00000527797	ERCC6L2	Q5T890	1561 aa		32.31	■■■□□ 2.76
VPS28-208	ENST00000527797	EPRS	P07814	1512 aa	Known RBP	32.31	■■■□□ 2.76
VPS28-208	ENST00000527797	NUP153	P49790	1475 aa	Known RBP	32.28	■■■□□ 2.76
VPS28-208	ENST00000527797	LRRIQ1	Q96JM4	1722 aa		32.27	■■■□□ 2.76
VPS28-208	ENST00000527797	ABCA8	O94911	1581 aa		32.25	■■■□□ 2.75
VPS28-208	ENST00000527797	MTUS2	Q5JR59	1369 aa		32.23	■■■□□ 2.75
VPS28-208	ENST00000527797	ARID3C	A6NKF2	412 aa		32.22	■■■□□ 2.75
VPS28-208	ENST00000527797	CDK13	Q14004	1512 aa	Known RBP	32.2	■■■□□ 2.75
VPS28-208	ENST00000527797	UACA	Q9BZF9	1416 aa		32.17	■■■□□ 2.74
VPS28-208	ENST00000527797	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	32.17	■■■□□ 2.74
VPS28-208	ENST00000527797	HNRNPUL2	Q1KMD3	747 aa	Known RBP	32.17	■■■□□ 2.74
VPS28-208	ENST00000527797	CDK11A	Q9UQ88	783 aa	Predicted RBP	32.14	■■■□□ 2.74
VPS28-208	ENST00000527797	EHBP1L1	Q8N3D4	1523 aa		32.14	■■■□□ 2.74
VPS28-208	ENST00000527797	MAGI3	Q5TCQ9	1506 aa		32.09	■■■□□ 2.73
VPS28-208	ENST00000527797	ATP10B	O94823	1461 aa		32.06	■■■□□ 2.72
VPS28-208	ENST00000527797	PHLDB1	Q86UU1	1377 aa		32.05	■■■□□ 2.72
VPS28-208	ENST00000527797	ABCC2	Q92887	1545 aa		32.05	■■■□□ 2.72
VPS28-208	ENST00000527797	RRBP1	Q9P2E9	1410 aa	Known RBP	32.03	■■■□□ 2.72
VPS28-208	ENST00000527797	UHRF1BP1L	A0JNW5	1464 aa		32.01	■■■□□ 2.72
VPS28-208	ENST00000527797	SUPT6H	Q7KZ85	1726 aa	Known RBP	32.01	■■■□□ 2.71
VPS28-208	ENST00000527797	NCOA2	Q15596	1464 aa		32.01	■■■□□ 2.71
VPS28-208	ENST00000527797	PLEKHD1	A6NEE1	506 aa		31.98	■■■□□ 2.71
VPS28-208	ENST00000527797	TRO	Q12816	1431 aa	Predicted RBP	31.97	■■■□□ 2.71
VPS28-208	ENST00000527797	CCNB3	Q8WWL7	1395 aa		31.97	■■■□□ 2.71
VPS28-208	ENST00000527797	ARHGEF11	O15085	1522 aa		31.93	■■■□□ 2.7
VPS28-208	ENST00000527797	MYOM3	Q5VTT5	1437 aa		31.88	■■■□□ 2.69
VPS28-208	ENST00000527797	KDM5B	Q9UGL1	1544 aa		31.86	■■■□□ 2.69
VPS28-208	ENST00000527797	FGD6	Q6ZV73	1430 aa		31.84	■■■□□ 2.69
VPS28-208	ENST00000527797	ADCY10	Q96PN6	1610 aa		31.82	■■■□□ 2.68
VPS28-208	ENST00000527797	FAM50A	Q14320	339 aa	Known RBP	31.81	■■■□□ 2.68
VPS28-208	ENST00000527797	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	31.79	■■■□□ 2.68	3e-6	■■□□□ 12.6
VPS28-208	ENST00000527797	ZCCHC11	Q5TAX3	1644 aa	Known RBP	31.78	■■■□□ 2.68
VPS28-208	ENST00000527797	KIF14	Q15058	1648 aa		31.75	■■■□□ 2.67
VPS28-208	ENST00000527797	MIA2	Q96PC5	1412 aa		31.75	■■■□□ 2.67
VPS28-208	ENST00000527797	RIMBP3C	A6NJZ7	1639 aa		31.69	■■■□□ 2.66
VPS28-208	ENST00000527797	RIMBP3B	A6NNM3	1639 aa		31.69	■■■□□ 2.66
VPS28-208	ENST00000527797	RIMBP3	Q9UFD9	1639 aa		31.69	■■■□□ 2.66
VPS28-208	ENST00000527797	NPM1	P06748	294 aa	Known RBP eCLIP	31.69	■■■□□ 2.66
VPS28-208	ENST00000527797	ITGAE	P38570	1179 aa		31.69	■■■□□ 2.66
VPS28-208	ENST00000527797	ABCC10	Q5T3U5	1492 aa		31.68	■■■□□ 2.66
VPS28-208	ENST00000527797	PTPN23	Q9H3S7	1636 aa		31.67	■■■□□ 2.66
VPS28-208	ENST00000527797	GPATCH8	Q9UKJ3	1502 aa	Known RBP	31.66	■■■□□ 2.66
VPS28-208	ENST00000527797	TCOF1	Q13428	1488 aa	Known RBP	31.65	■■■□□ 2.66
VPS28-208	ENST00000527797	CYB5RL	Q6IPT4	315 aa		31.63	■■■□□ 2.65
VPS28-208	ENST00000527797	KCNH8	Q96L42	1107 aa		31.63	■■■□□ 2.65
VPS28-208	ENST00000527797	CFDP1	Q9UEE9	299 aa	Predicted RBP	31.63	■■■□□ 2.65
VPS28-208	ENST00000527797	ITSN2	Q9NZM3	1697 aa		31.61	■■■□□ 2.65
VPS28-208	ENST00000527797	WDR7	Q9Y4E6	1490 aa		31.58	■■■□□ 2.65
VPS28-208	ENST00000527797	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	31.55	■■■□□ 2.64	7e-7	■■□□□ 14.3
VPS28-208	ENST00000527797	ASXL2	Q76L83	1435 aa		31.54	■■■□□ 2.64
VPS28-208	ENST00000527797	CDC42BPA	Q5VT25	1732 aa		31.51	■■■□□ 2.63
VPS28-208	ENST00000527797	ZNF644	Q9H582	1327 aa	Predicted RBP	31.51	■■■□□ 2.63
VPS28-208	ENST00000527797	ZNF777	Q9ULD5	760 aa	Predicted RBP	31.5	■■■□□ 2.63
VPS28-208	ENST00000527797	TTC37	Q6PGP7	1564 aa		31.49	■■■□□ 2.63
VPS28-208	ENST00000527797	CAMSAP2	Q08AD1	1489 aa		31.47	■■■□□ 2.63
VPS28-208	ENST00000527797	PTPRK	Q15262	1439 aa		31.44	■■■□□ 2.62
VPS28-208	ENST00000527797	PREX2	Q70Z35	1606 aa		31.43	■■■□□ 2.62

Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms