RNA–Protein interactions for RNA: ENST00000526280.1

SMPD1-202, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 1,344 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-202ENST00000526280 RIMBP3CA6NJZ7 1639 aa21.43■■□□□ 1.02
SMPD1-202ENST00000526280 RIMBP3BA6NNM3 1639 aa21.43■■□□□ 1.02
SMPD1-202ENST00000526280 RIMBP3Q9UFD9 1639 aa21.43■■□□□ 1.02
SMPD1-202ENST00000526280 JPH4Q96JJ6 628 aa21.41■■□□□ 1.02
SMPD1-202ENST00000526280 SHROOM2Q13796 1616 aa21.39■■□□□ 1.01
SMPD1-202ENST00000526280 KIF21BO75037 1637 aa21.34■■□□□ 1.01
SMPD1-202ENST00000526280 IQGAP2Q13576 1575 aa21.32■■□□□ 1
SMPD1-202ENST00000526280 PRG4Q92954 1404 aaPredicted RBP21.32■■□□□ 1
SMPD1-202ENST00000526280 CYB5RLQ6IPT4 315 aa21.31■■□□□ 1
SMPD1-202ENST00000526280 ERCC6L2Q5T890 1561 aa21.31■■□□□ 1
SMPD1-202ENST00000526280 CTTNBP2Q8WZ74 1663 aa21.29■■□□□ 1
SMPD1-202ENST00000526280 ARAP1Q96P48 1450 aa21.28■■□□□ 1
SMPD1-202ENST00000526280 GOLGA3Q08378 1498 aa21.24■□□□□ 0.99
SMPD1-202ENST00000526280 UGGT2Q9NYU1 1516 aa21.23■□□□□ 0.99
SMPD1-202ENST00000526280 EHMT2Q96KQ7 1210 aa21.22■□□□□ 0.99
SMPD1-202ENST00000526280 CARMIL2Q6F5E8 1435 aa21.2■□□□□ 0.98
SMPD1-202ENST00000526280 UBTFP17480 764 aaKnown RBP21.19■□□□□ 0.98
SMPD1-202ENST00000526280 DISP1Q96F81 1524 aa21.18■□□□□ 0.98
SMPD1-202ENST00000526280 TNIKQ9UKE5 1360 aa21.13■□□□□ 0.97
SMPD1-202ENST00000526280 KIAA0556O60303 1618 aa21.11■□□□□ 0.97
SMPD1-202ENST00000526280 PTPRGP23470 1445 aa21.1■□□□□ 0.97
SMPD1-202ENST00000526280 RANGAP1P46060 587 aaPredicted RBP21.06■□□□□ 0.96
SMPD1-202ENST00000526280 TTBK1Q5TCY1 1321 aaPredicted RBP21.05■□□□□ 0.96
SMPD1-202ENST00000526280 SAMD9Q5K651 1589 aa21.04■□□□□ 0.96
SMPD1-202ENST00000526280 P3H3Q8IVL6 736 aa21.04■□□□□ 0.96
SMPD1-202ENST00000526280 EFCAB5A4FU69 1503 aa20.99■□□□□ 0.95
SMPD1-202ENST00000526280 LOC105371045A0A1W2PR82 267 aa20.99■□□□□ 0.95
SMPD1-202ENST00000526280 UACAQ9BZF9 1416 aa20.96■□□□□ 0.95
SMPD1-202ENST00000526280 ADCY10Q96PN6 1610 aa20.95■□□□□ 0.94
SMPD1-202ENST00000526280 TRHP20396 242 aaPredicted RBP20.95■□□□□ 0.94
SMPD1-202ENST00000526280 FHOD3Q2V2M9 1422 aa20.94■□□□□ 0.94
SMPD1-202ENST00000526280 UHRF1BP1LA0JNW5 1464 aa20.94■□□□□ 0.94
SMPD1-202ENST00000526280 ARHGAP35Q9NRY4 1499 aa20.93■□□□□ 0.94
SMPD1-202ENST00000526280 PLB1Q6P1J6 1458 aa20.91■□□□□ 0.94
SMPD1-202ENST00000526280 ABCC2Q92887 1545 aa20.9■□□□□ 0.94
SMPD1-202ENST00000526280 NPM1P06748 294 aaKnown RBP eCLIP20.9■□□□□ 0.94
SMPD1-202ENST00000526280 ABCA8O94911 1581 aa20.88■□□□□ 0.93
SMPD1-202ENST00000526280 CLIP1P30622 1438 aa20.87■□□□□ 0.93
SMPD1-202ENST00000526280 KDM5BQ9UGL1 1544 aa20.83■□□□□ 0.92
SMPD1-202ENST00000526280 CEP162Q5TB80 1403 aa20.82■□□□□ 0.92
SMPD1-202ENST00000526280 FMN1Q68DA7 1419 aa20.81■□□□□ 0.92
SMPD1-202ENST00000526280 RAPGEF6Q8TEU7 1601 aa20.8■□□□□ 0.92
SMPD1-202ENST00000526280 MAPKBP1O60336 1514 aa20.79■□□□□ 0.92
SMPD1-202ENST00000526280 ZCCHC11Q5TAX3 1644 aaKnown RBP20.76■□□□□ 0.91
SMPD1-202ENST00000526280 ATP10BO94823 1461 aa20.74■□□□□ 0.91
SMPD1-202ENST00000526280 NUP153P49790 1475 aaKnown RBP20.74■□□□□ 0.91
SMPD1-202ENST00000526280 ARID3CA6NKF2 412 aa20.73■□□□□ 0.91
SMPD1-202ENST00000526280 ASXL2Q76L83 1435 aa20.72■□□□□ 0.91
SMPD1-202ENST00000526280 ATP1B4Q9UN42 357 aaPredicted RBP20.68■□□□□ 0.9
SMPD1-202ENST00000526280 ABCC10Q5T3U5 1492 aa20.68■□□□□ 0.9
SMPD1-202ENST00000526280 CASKIN1Q8WXD9 1431 aa20.67■□□□□ 0.9
SMPD1-202ENST00000526280 HECW1Q76N89 1606 aa20.66■□□□□ 0.9
SMPD1-202ENST00000526280 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.65■□□□□ 0.9
SMPD1-202ENST00000526280 HNRNPUL2Q1KMD3 747 aaKnown RBP20.65■□□□□ 0.9
SMPD1-202ENST00000526280 WDR7Q9Y4E6 1490 aa20.65■□□□□ 0.9
SMPD1-202ENST00000526280 FAM69CQ0P6D2 419 aa20.64■□□□□ 0.89
SMPD1-202ENST00000526280 PCF11O94913 1555 aaKnown RBP20.64■□□□□ 0.89
SMPD1-202ENST00000526280 EPRSP07814 1512 aaKnown RBP20.63■□□□□ 0.89
SMPD1-202ENST00000526280 DIP2BQ9P265 1576 aa20.63■□□□□ 0.89
SMPD1-202ENST00000526280 FYCO1Q9BQS8 1478 aa20.62■□□□□ 0.89
SMPD1-202ENST00000526280 KIF13AQ9H1H9 1805 aa20.62■□□□□ 0.89
SMPD1-202ENST00000526280 CDK13Q14004 1512 aaKnown RBP20.6■□□□□ 0.89
SMPD1-202ENST00000526280 PLEKHD1A6NEE1 506 aa20.59■□□□□ 0.89
SMPD1-202ENST00000526280 KCNH8Q96L42 1107 aa20.58■□□□□ 0.89
SMPD1-202ENST00000526280 GLI2P10070 1586 aa20.57■□□□□ 0.88
SMPD1-202ENST00000526280 LRRIQ1Q96JM4 1722 aa20.57■□□□□ 0.88
SMPD1-202ENST00000526280 VPS8Q8N3P4 1428 aa20.56■□□□□ 0.88
SMPD1-202ENST00000526280 CCDC18Q5T9S5 1454 aa20.55■□□□□ 0.88
SMPD1-202ENST00000526280 CDK11AQ9UQ88 783 aaPredicted RBP20.54■□□□□ 0.88
SMPD1-202ENST00000526280 MAP3K4Q9Y6R4 1608 aa20.48■□□□□ 0.87
SMPD1-202ENST00000526280 TROQ12816 1431 aaPredicted RBP20.47■□□□□ 0.87
SMPD1-202ENST00000526280 CD109Q6YHK3 1445 aa20.45■□□□□ 0.86
SMPD1-202ENST00000526280 CFAP43Q8NDM7 1665 aa20.44■□□□□ 0.86
SMPD1-202ENST00000526280 TSPOAP1O95153 1857 aa20.44■□□□□ 0.86
SMPD1-202ENST00000526280 ABCA9Q8IUA7 1624 aa20.44■□□□□ 0.86
SMPD1-202ENST00000526280 MAGI3Q5TCQ9 1506 aa20.43■□□□□ 0.86
SMPD1-202ENST00000526280 PPRC1Q5VV67 1664 aaKnown RBP20.41■□□□□ 0.86
SMPD1-202ENST00000526280 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.4■□□□□ 0.86
SMPD1-202ENST00000526280 MTUS2Q5JR59 1369 aa20.37■□□□□ 0.85
SMPD1-202ENST00000526280 TEX14Q8IWB6 1497 aa20.37■□□□□ 0.85
SMPD1-202ENST00000526280 MAP3K1Q13233 1512 aa20.37■□□□□ 0.85
SMPD1-202ENST00000526280 TIAM1Q13009 1591 aa20.37■□□□□ 0.85
SMPD1-202ENST00000526280 KIF14Q15058 1648 aa20.37■□□□□ 0.85
SMPD1-202ENST00000526280 TTC37Q6PGP7 1564 aa20.36■□□□□ 0.85
SMPD1-202ENST00000526280 APLP2Q06481 763 aa20.32■□□□□ 0.84
SMPD1-202ENST00000526280 EHBP1L1Q8N3D4 1523 aa20.31■□□□□ 0.84
SMPD1-202ENST00000526280 PLCH2O75038 1416 aa20.31■□□□□ 0.84
SMPD1-202ENST00000526280 LRRC9Q6ZRR7 1453 aa20.3■□□□□ 0.84
SMPD1-202ENST00000526280 KANK4Q5T7N3 995 aaPredicted RBP20.29■□□□□ 0.84
SMPD1-202ENST00000526280 PHLDB1Q86UU1 1377 aa20.27■□□□□ 0.84
SMPD1-202ENST00000526280 NEO1Q92859 1461 aa20.27■□□□□ 0.84
SMPD1-202ENST00000526280 MYO5CQ9NQX4 1742 aa20.26■□□□□ 0.83
SMPD1-202ENST00000526280 ARAP3Q8WWN8 1544 aa20.26■□□□□ 0.83
SMPD1-202ENST00000526280 FANCAO15360 1455 aa20.25■□□□□ 0.83
SMPD1-202ENST00000526280 KDM6BO15054 1643 aa20.24■□□□□ 0.83
SMPD1-202ENST00000526280 COL17A1Q9UMD9 1497 aaPredicted RBP20.24■□□□□ 0.83
SMPD1-202ENST00000526280 EFCAB2Q5VUJ9 269 aa20.24■□□□□ 0.83
SMPD1-202ENST00000526280 GPATCH8Q9UKJ3 1502 aaKnown RBP20.23■□□□□ 0.83
SMPD1-202ENST00000526280 SUPT6HQ7KZ85 1726 aaKnown RBP20.22■□□□□ 0.83
SMPD1-202ENST00000526280 CCNB3Q8WWL7 1395 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms