RNA–Protein interactions for RNA: ENST00000523867.5

HDAC9-227, Transcript of histone deacetylase 9, humanhuman

TSL 1 (best)

Gene HDAC9, Length 2,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-227ENST00000523867 RUSC2Q8N2Y8 1516 aa10.75□□□□□ -0.69
HDAC9-227ENST00000523867 YTHDC1Q96MU7 727 aaKnown RBP10.74□□□□□ -0.69
HDAC9-227ENST00000523867 GOLGA3Q08378 1498 aa10.74□□□□□ -0.69
HDAC9-227ENST00000523867 PPP6R1Q9UPN7 881 aa10.74□□□□□ -0.69
HDAC9-227ENST00000523867 PDS5BQ9NTI5 1447 aa10.72□□□□□ -0.69
HDAC9-227ENST00000523867 ZNF316A6NFI3 1004 aaPredicted RBP10.71□□□□□ -0.7
HDAC9-227ENST00000523867 PDIA4P13667 645 aaKnown RBP10.7□□□□□ -0.7
HDAC9-227ENST00000523867 SLC4A1APQ9BWU0 796 aaKnown RBP10.7□□□□□ -0.7
HDAC9-227ENST00000523867 NESP48681 1621 aa10.69□□□□□ -0.7
HDAC9-227ENST00000523867 TSHZ2Q9NRE2 1034 aa10.68□□□□□ -0.7
HDAC9-227ENST00000523867 CEP164Q9UPV0 1460 aa10.66□□□□□ -0.7
HDAC9-227ENST00000523867 HNRNPUL2Q1KMD3 747 aaKnown RBP10.65□□□□□ -0.71
HDAC9-227ENST00000523867 FBXO3Q9UK99 471 aa10.63□□□□□ -0.71
HDAC9-227ENST00000523867 CLIP1P30622 1438 aa10.63□□□□□ -0.71
HDAC9-227ENST00000523867 KIF21AQ7Z4S6 1674 aa10.63□□□□□ -0.71
HDAC9-227ENST00000523867 KIF21BO75037 1637 aa10.62□□□□□ -0.71
HDAC9-227ENST00000523867 WDR62O43379 1518 aa10.62□□□□□ -0.71
HDAC9-227ENST00000523867 MRC2Q9UBG0 1479 aa10.62□□□□□ -0.71
HDAC9-227ENST00000523867 SYNJ1O43426 1573 aa10.61□□□□□ -0.71
HDAC9-227ENST00000523867 CADPSQ9ULU8 1353 aa10.61□□□□□ -0.71
HDAC9-227ENST00000523867 CHMP4AQ9BY43 222 aa10.6□□□□□ -0.71
HDAC9-227ENST00000523867 MYT1LQ9UL68 1186 aa10.6□□□□□ -0.71
HDAC9-227ENST00000523867 VPS8Q8N3P4 1428 aa10.6□□□□□ -0.71
HDAC9-227ENST00000523867 SUPT16HQ9Y5B9 1047 aaKnown RBP10.59□□□□□ -0.71
HDAC9-227ENST00000523867 UBE2Q2Q8WVN8 375 aa10.57□□□□□ -0.72
HDAC9-227ENST00000523867 MIER1Q8N108 512 aa10.56□□□□□ -0.72
HDAC9-227ENST00000523867 RAPGEF2Q9Y4G8 1499 aa10.55□□□□□ -0.72
HDAC9-227ENST00000523867 ZBTB22O15209 634 aa10.53□□□□□ -0.72
HDAC9-227ENST00000523867 DHX37Q8IY37 1157 aaKnown RBP10.53□□□□□ -0.72
HDAC9-227ENST00000523867 SAMD1Q6SPF0 538 aaPredicted RBP10.51□□□□□ -0.73
HDAC9-227ENST00000523867 KDM2AQ9Y2K7 1162 aa10.51□□□□□ -0.73
HDAC9-227ENST00000523867 PDE4CQ08493 712 aa10.5□□□□□ -0.73
HDAC9-227ENST00000523867 ERICH6BQ5W0A0 696 aa10.49□□□□□ -0.73
HDAC9-227ENST00000523867 TOP2BQ02880 1626 aa10.47□□□□□ -0.73
HDAC9-227ENST00000523867 CFTRP13569 1480 aa10.47□□□□□ -0.73
HDAC9-227ENST00000523867 FANCD2Q9BXW9 1451 aa10.46□□□□□ -0.73
HDAC9-227ENST00000523867 FBLN2P98095 1184 aa10.44□□□□□ -0.74
HDAC9-227ENST00000523867 OSCARQ8IYS5 282 aa10.43□□□□□ -0.74
HDAC9-227ENST00000523867 ERICH3Q5RHP9 1530 aa10.43□□□□□ -0.74
HDAC9-227ENST00000523867 DHX57Q6P158 1386 aaKnown RBP10.43□□□□□ -0.74
HDAC9-227ENST00000523867 PRXQ9BXM0 1461 aa10.43□□□□□ -0.74
HDAC9-227ENST00000523867 BIVM-ERCC5R4GMW8 1640 aa10.42□□□□□ -0.74
HDAC9-227ENST00000523867 ARAP1Q96P48 1450 aa10.41□□□□□ -0.74
HDAC9-227ENST00000523867 KANK4Q5T7N3 995 aaPredicted RBP10.41□□□□□ -0.74
HDAC9-227ENST00000523867 ANO8Q9HCE9 1232 aaPredicted RBP10.41□□□□□ -0.74
HDAC9-227ENST00000523867 PRDM2Q13029 1718 aa10.41□□□□□ -0.74
HDAC9-227ENST00000523867 VSIG10Q8N0Z9 540 aa10.38□□□□□ -0.75
HDAC9-227ENST00000523867 RBM19Q9Y4C8 960 aaKnown RBP10.38□□□□□ -0.75
HDAC9-227ENST00000523867 IGSF3O75054 1194 aa10.37□□□□□ -0.75
HDAC9-227ENST00000523867 KIF27Q86VH2 1401 aa10.37□□□□□ -0.75
HDAC9-227ENST00000523867 RRBP1Q9P2E9 1410 aaKnown RBP10.36□□□□□ -0.75
HDAC9-227ENST00000523867 URB2Q14146 1524 aaKnown RBP10.36□□□□□ -0.75
HDAC9-227ENST00000523867 IFT140Q96RY7 1462 aa10.36□□□□□ -0.75
HDAC9-227ENST00000523867 FANCIQ9NVI1 1328 aa10.35□□□□□ -0.75
HDAC9-227ENST00000523867 PKNOX2Q96KN3 472 aa10.35□□□□□ -0.75
HDAC9-227ENST00000523867 CUX1P39880 1505 aa10.34□□□□□ -0.75
HDAC9-227ENST00000523867 CNKSR2Q8WXI2 1034 aa10.34□□□□□ -0.75
HDAC9-227ENST00000523867 CCNB3Q8WWL7 1395 aa10.33□□□□□ -0.76
HDAC9-227ENST00000523867 CDK11BP21127 795 aaKnown RBP10.33□□□□□ -0.76
HDAC9-227ENST00000523867 CDK11AQ9UQ88 783 aaPredicted RBP10.33□□□□□ -0.76
HDAC9-227ENST00000523867 BRD2P25440 801 aaKnown RBP10.32□□□□□ -0.76
HDAC9-227ENST00000523867 ITGAEP38570 1179 aa10.32□□□□□ -0.76
HDAC9-227ENST00000523867 BCL11BQ9C0K0 894 aaPredicted RBP10.32□□□□□ -0.76
HDAC9-227ENST00000523867 RIMBP3CA6NJZ7 1639 aa10.32□□□□□ -0.76
HDAC9-227ENST00000523867 RIMBP3BA6NNM3 1639 aa10.32□□□□□ -0.76
HDAC9-227ENST00000523867 RIMBP3Q9UFD9 1639 aa10.32□□□□□ -0.76
HDAC9-227ENST00000523867 DEKP35659 375 aaKnown RBP10.31□□□□□ -0.76
HDAC9-227ENST00000523867 ARHGAP35Q9NRY4 1499 aa10.3□□□□□ -0.76
HDAC9-227ENST00000523867 MSH5O43196 834 aa10.3□□□□□ -0.76
HDAC9-227ENST00000523867 TAF7LQ5H9L4 462 aa10.29□□□□□ -0.76
HDAC9-227ENST00000523867 NEFLP07196 543 aa10.29□□□□□ -0.76
HDAC9-227ENST00000523867 PPP4R3CPQ6ZMV5 832 aa10.27□□□□□ -0.77
HDAC9-227ENST00000523867 WDR97A6NE52 1622 aa10.27□□□□□ -0.77
HDAC9-227ENST00000523867 ARHGEF11O15085 1522 aa10.27□□□□□ -0.77
HDAC9-227ENST00000523867 CFAP44Q96MT7 982 aa10.26□□□□□ -0.77
HDAC9-227ENST00000523867 RAB3GAP2Q9H2M9 1393 aa10.26□□□□□ -0.77
HDAC9-227ENST00000523867 FKBP8Q14318 412 aa10.25□□□□□ -0.77
HDAC9-227ENST00000523867 SALL2Q9Y467 1007 aaPredicted RBP10.25□□□□□ -0.77
HDAC9-227ENST00000523867 DNMBPQ6XZF7 1577 aa10.25□□□□□ -0.77
HDAC9-227ENST00000523867 TOPBP1Q92547 1522 aa10.25□□□□□ -0.77
HDAC9-227ENST00000523867 IGF1RP08069 1367 aa10.23□□□□□ -0.77
HDAC9-227ENST00000523867 EIF4G3O43432 1585 aaKnown RBP10.23□□□□□ -0.77
HDAC9-227ENST00000523867 MAP3K1Q13233 1512 aa10.22□□□□□ -0.77
HDAC9-227ENST00000523867 TIAM1Q13009 1591 aa10.22□□□□□ -0.77
HDAC9-227ENST00000523867 SETD5Q9C0A6 1442 aa10.21□□□□□ -0.77
HDAC9-227ENST00000523867 NPM3O75607 178 aaKnown RBP10.21□□□□□ -0.78
HDAC9-227ENST00000523867 FOXD1Q16676 465 aa10.21□□□□□ -0.78
HDAC9-227ENST00000523867 MAPKBP1O60336 1514 aa10.21□□□□□ -0.78
HDAC9-227ENST00000523867 ZNF608Q9ULD9 1512 aaPredicted RBP10.21□□□□□ -0.78
HDAC9-227ENST00000523867 CARMIL1Q5VZK9 1371 aa10.2□□□□□ -0.78
HDAC9-227ENST00000523867 TARBP1Q13395 1621 aaKnown RBP10.19□□□□□ -0.78
HDAC9-227ENST00000523867 FAM50AQ14320 339 aaKnown RBP10.19□□□□□ -0.78
HDAC9-227ENST00000523867 LRRC9Q6ZRR7 1453 aa10.19□□□□□ -0.78
HDAC9-227ENST00000523867 KCNH8Q96L42 1107 aa10.18□□□□□ -0.78
HDAC9-227ENST00000523867 PHLDB1Q86UU1 1377 aa10.17□□□□□ -0.78
HDAC9-227ENST00000523867 FHAD1B1AJZ9 1412 aa10.17□□□□□ -0.78
HDAC9-227ENST00000523867 SIN3AQ96ST3 1273 aa10.17□□□□□ -0.78
HDAC9-227ENST00000523867 DDX10Q13206 875 aaKnown RBP10.16□□□□□ -0.78
HDAC9-227ENST00000523867 CHD1O14646 1710 aa10.16□□□□□ -0.78
HDAC9-227ENST00000523867 ATP1B4Q9UN42 357 aaPredicted RBP10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms