RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 LOC105371045A0A1W2PR82 267 aa21.2■□□□□ 0.98
CPNE3-205ENST00000522240 TNIKQ9UKE5 1360 aa21.2■□□□□ 0.98
CPNE3-205ENST00000522240 GRIN2AQ12879 1464 aa21.18■□□□□ 0.98
CPNE3-205ENST00000522240 CTTNBP2Q8WZ74 1663 aa21.16■□□□□ 0.98
CPNE3-205ENST00000522240 UBTFP17480 764 aaKnown RBP21.11■□□□□ 0.97
CPNE3-205ENST00000522240 EHMT2Q96KQ7 1210 aa21.11■□□□□ 0.97
CPNE3-205ENST00000522240 CHD1O14646 1710 aa21.11■□□□□ 0.97
CPNE3-205ENST00000522240 RIMBP3CA6NJZ7 1639 aa21.07■□□□□ 0.96
CPNE3-205ENST00000522240 RIMBP3BA6NNM3 1639 aa21.07■□□□□ 0.96
CPNE3-205ENST00000522240 RIMBP3Q9UFD9 1639 aa21.07■□□□□ 0.96
CPNE3-205ENST00000522240 NUP160Q12769 1436 aa21.06■□□□□ 0.96
CPNE3-205ENST00000522240 CHMP7Q8WUX9 453 aaPredicted RBP21.05■□□□□ 0.96
CPNE3-205ENST00000522240 CEP170Q5SW79 1584 aa21.05■□□□□ 0.96
CPNE3-205ENST00000522240 CEP162Q5TB80 1403 aa21.04■□□□□ 0.96
CPNE3-205ENST00000522240 ARHGEF11O15085 1522 aa21.03■□□□□ 0.96
CPNE3-205ENST00000522240 IQGAP2Q13576 1575 aa21.02■□□□□ 0.96
CPNE3-205ENST00000522240 KIAA0586Q9BVV6 1533 aa21.01■□□□□ 0.95
CPNE3-205ENST00000522240 CLIP1P30622 1438 aa20.96■□□□□ 0.95
CPNE3-205ENST00000522240 EFCAB5A4FU69 1503 aa20.96■□□□□ 0.95
CPNE3-205ENST00000522240 FBLN2P98095 1184 aa20.96■□□□□ 0.95
CPNE3-205ENST00000522240 UGGT2Q9NYU1 1516 aa20.94■□□□□ 0.94
CPNE3-205ENST00000522240 SAMD9Q5K651 1589 aa20.92■□□□□ 0.94
CPNE3-205ENST00000522240 CLASP1Q7Z460 1538 aa20.91■□□□□ 0.94
CPNE3-205ENST00000522240 ARHGAP35Q9NRY4 1499 aa20.89■□□□□ 0.94
CPNE3-205ENST00000522240 CYB5RLQ6IPT4 315 aa20.88■□□□□ 0.93
CPNE3-205ENST00000522240 SHROOM2Q13796 1616 aa20.86■□□□□ 0.93
CPNE3-205ENST00000522240 ARAP1Q96P48 1450 aa20.84■□□□□ 0.93
CPNE3-205ENST00000522240 KIAA0556O60303 1618 aa20.82■□□□□ 0.92
CPNE3-205ENST00000522240 DISP1Q96F81 1524 aa20.79■□□□□ 0.92
CPNE3-205ENST00000522240 KCNA4P22459 653 aa20.78■□□□□ 0.92
CPNE3-205ENST00000522240 PIAS4Q8N2W9 510 aaPredicted RBP20.78■□□□□ 0.92
CPNE3-205ENST00000522240 VPS8Q8N3P4 1428 aa20.77■□□□□ 0.91
CPNE3-205ENST00000522240 RANGAP1P46060 587 aaPredicted RBP20.76■□□□□ 0.91
CPNE3-205ENST00000522240 CARMIL2Q6F5E8 1435 aa20.75■□□□□ 0.91
CPNE3-205ENST00000522240 FHOD3Q2V2M9 1422 aa20.74■□□□□ 0.91
CPNE3-205ENST00000522240 JPH4Q96JJ6 628 aa20.74■□□□□ 0.91
CPNE3-205ENST00000522240 FMN1Q68DA7 1419 aa20.7■□□□□ 0.9
CPNE3-205ENST00000522240 PRG4Q92954 1404 aaPredicted RBP20.7■□□□□ 0.9
CPNE3-205ENST00000522240 TRHP20396 242 aaPredicted RBP20.69■□□□□ 0.9
CPNE3-205ENST00000522240 PCF11O94913 1555 aaKnown RBP20.65■□□□□ 0.9
CPNE3-205ENST00000522240 FYCO1Q9BQS8 1478 aa20.63■□□□□ 0.89
CPNE3-205ENST00000522240 P3H3Q8IVL6 736 aa20.62■□□□□ 0.89
CPNE3-205ENST00000522240 ERCC6L2Q5T890 1561 aa20.61■□□□□ 0.89
CPNE3-205ENST00000522240 CASKIN1Q8WXD9 1431 aa20.61■□□□□ 0.89
CPNE3-205ENST00000522240 HECW1Q76N89 1606 aa20.58■□□□□ 0.89
CPNE3-205ENST00000522240 RAPGEF6Q8TEU7 1601 aa20.56■□□□□ 0.88
CPNE3-205ENST00000522240 ABCA8O94911 1581 aa20.54■□□□□ 0.88
CPNE3-205ENST00000522240 CFAP43Q8NDM7 1665 aa20.54■□□□□ 0.88
CPNE3-205ENST00000522240 MAP3K1Q13233 1512 aa20.53■□□□□ 0.88
CPNE3-205ENST00000522240 PTPRGP23470 1445 aa20.52■□□□□ 0.87
CPNE3-205ENST00000522240 TIAM1Q13009 1591 aa20.5■□□□□ 0.87
CPNE3-205ENST00000522240 CCDC18Q5T9S5 1454 aa20.5■□□□□ 0.87
CPNE3-205ENST00000522240 PLB1Q6P1J6 1458 aa20.48■□□□□ 0.87
CPNE3-205ENST00000522240 LRRIQ1Q96JM4 1722 aa20.47■□□□□ 0.87
CPNE3-205ENST00000522240 NUP153P49790 1475 aaKnown RBP20.46■□□□□ 0.87
CPNE3-205ENST00000522240 PPP4R3CPQ6ZMV5 832 aa20.45■□□□□ 0.86
CPNE3-205ENST00000522240 ABCC2Q92887 1545 aa20.44■□□□□ 0.86
CPNE3-205ENST00000522240 UACAQ9BZF9 1416 aa20.44■□□□□ 0.86
CPNE3-205ENST00000522240 UHRF1BP1LA0JNW5 1464 aa20.43■□□□□ 0.86
CPNE3-205ENST00000522240 EPRSP07814 1512 aaKnown RBP20.43■□□□□ 0.86
CPNE3-205ENST00000522240 APLP2Q06481 763 aa20.42■□□□□ 0.86
CPNE3-205ENST00000522240 TTBK1Q5TCY1 1321 aaPredicted RBP20.38■□□□□ 0.85
CPNE3-205ENST00000522240 CDK13Q14004 1512 aaKnown RBP20.37■□□□□ 0.85
CPNE3-205ENST00000522240 LRRC9Q6ZRR7 1453 aa20.36■□□□□ 0.85
CPNE3-205ENST00000522240 ADCY10Q96PN6 1610 aa20.35■□□□□ 0.85
CPNE3-205ENST00000522240 ATP1B4Q9UN42 357 aaPredicted RBP20.35■□□□□ 0.85
CPNE3-205ENST00000522240 EHBP1L1Q8N3D4 1523 aa20.35■□□□□ 0.85
CPNE3-205ENST00000522240 KDM5BQ9UGL1 1544 aa20.32■□□□□ 0.84
CPNE3-205ENST00000522240 ATP10BO94823 1461 aa20.31■□□□□ 0.84
CPNE3-205ENST00000522240 ZCCHC11Q5TAX3 1644 aaKnown RBP20.3■□□□□ 0.84
CPNE3-205ENST00000522240 MAGI3Q5TCQ9 1506 aa20.28■□□□□ 0.84
CPNE3-205ENST00000522240 MTUS2Q5JR59 1369 aa20.26■□□□□ 0.83
CPNE3-205ENST00000522240 SUPT6HQ7KZ85 1726 aaKnown RBP20.25■□□□□ 0.83
CPNE3-205ENST00000522240 KANK4Q5T7N3 995 aaPredicted RBP20.25■□□□□ 0.83
CPNE3-205ENST00000522240 CDK11AQ9UQ88 783 aaPredicted RBP20.24■□□□□ 0.83
CPNE3-205ENST00000522240 TROQ12816 1431 aaPredicted RBP20.24■□□□□ 0.83
CPNE3-205ENST00000522240 ARID3CA6NKF2 412 aa20.19■□□□□ 0.82
CPNE3-205ENST00000522240 KIF14Q15058 1648 aa20.19■□□□□ 0.82
CPNE3-205ENST00000522240 PPARGC1BQ86YN6 1023 aaKnown RBP20.18■□□□□ 0.82
CPNE3-205ENST00000522240 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.17■□□□□ 0.82
CPNE3-205ENST00000522240 HNRNPUL2Q1KMD3 747 aaKnown RBP20.17■□□□□ 0.82
CPNE3-205ENST00000522240 NCBP3Q53F19 620 aaKnown RBP20.17■□□□□ 0.82
CPNE3-205ENST00000522240 NCOA2Q15596 1464 aa20.17■□□□□ 0.82
CPNE3-205ENST00000522240 PLEKHD1A6NEE1 506 aa20.14■□□□□ 0.81
CPNE3-205ENST00000522240 WDR7Q9Y4E6 1490 aa20.13■□□□□ 0.81
CPNE3-205ENST00000522240 MAPKBP1O60336 1514 aa20.12■□□□□ 0.81
CPNE3-205ENST00000522240 PHLDB1Q86UU1 1377 aa20.1■□□□□ 0.81
CPNE3-205ENST00000522240 ITSN2Q9NZM3 1697 aa20.1■□□□□ 0.81
CPNE3-205ENST00000522240 ASXL2Q76L83 1435 aa20.09■□□□□ 0.81
CPNE3-205ENST00000522240 RRBP1Q9P2E9 1410 aaKnown RBP20.09■□□□□ 0.81
CPNE3-205ENST00000522240 ABCC10Q5T3U5 1492 aa20.08■□□□□ 0.81
CPNE3-205ENST00000522240 NPM1P06748 294 aaKnown RBP eCLIP20.08■□□□□ 0.81
CPNE3-205ENST00000522240 MYOM3Q5VTT5 1437 aa20.08■□□□□ 0.8
CPNE3-205ENST00000522240 TRIM26Q12899 539 aaPredicted RBP20.06■□□□□ 0.8
CPNE3-205ENST00000522240 TTC37Q6PGP7 1564 aa20.04■□□□□ 0.8
CPNE3-205ENST00000522240 KIF13AQ9H1H9 1805 aa20.04■□□□□ 0.8
CPNE3-205ENST00000522240 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.04■□□□□ 0.8
CPNE3-205ENST00000522240 FGD6Q6ZV73 1430 aa20.03■□□□□ 0.8
CPNE3-205ENST00000522240 CDC42BPAQ5VT25 1732 aa20.03■□□□□ 0.8
CPNE3-205ENST00000522240 MIA2Q96PC5 1412 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms