RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 RIMBP3CA6NJZ7 1639 aa23.66■■□□□ 1.38
NUP54-216ENST00000514901 RIMBP3BA6NNM3 1639 aa23.66■■□□□ 1.38
NUP54-216ENST00000514901 RIMBP3Q9UFD9 1639 aa23.66■■□□□ 1.38
NUP54-216ENST00000514901 FAM9AQ8IZU1 332 aaPredicted RBP23.66■■□□□ 1.38
NUP54-216ENST00000514901 SHROOM2Q13796 1616 aa23.6■■□□□ 1.37
NUP54-216ENST00000514901 PRG4Q92954 1404 aaPredicted RBP23.56■■□□□ 1.36
NUP54-216ENST00000514901 CYB5RLQ6IPT4 315 aa23.55■■□□□ 1.36
NUP54-216ENST00000514901 ARAP1Q96P48 1450 aa23.52■■□□□ 1.36
NUP54-216ENST00000514901 IQGAP2Q13576 1575 aa23.52■■□□□ 1.36
NUP54-216ENST00000514901 KIF21BO75037 1637 aa23.48■■□□□ 1.35
NUP54-216ENST00000514901 ERCC6L2Q5T890 1561 aa23.47■■□□□ 1.35
NUP54-216ENST00000514901 CARMIL2Q6F5E8 1435 aa23.45■■□□□ 1.34
NUP54-216ENST00000514901 CTTNBP2Q8WZ74 1663 aa23.43■■□□□ 1.34
NUP54-216ENST00000514901 UGGT2Q9NYU1 1516 aa23.42■■□□□ 1.34
NUP54-216ENST00000514901 GOLGA3Q08378 1498 aa23.38■■□□□ 1.33
NUP54-216ENST00000514901 UBTFP17480 764 aaKnown RBP23.37■■□□□ 1.33
NUP54-216ENST00000514901 TNIKQ9UKE5 1360 aa23.35■■□□□ 1.33
NUP54-216ENST00000514901 PTPRGP23470 1445 aa23.33■■□□□ 1.33
NUP54-216ENST00000514901 DISP1Q96F81 1524 aa23.33■■□□□ 1.33
NUP54-216ENST00000514901 EHMT2Q96KQ7 1210 aa23.3■■□□□ 1.32
NUP54-216ENST00000514901 KIAA0556O60303 1618 aa23.27■■□□□ 1.32
NUP54-216ENST00000514901 TTBK1Q5TCY1 1321 aaPredicted RBP23.23■■□□□ 1.31
NUP54-216ENST00000514901 NPM1P06748 294 aaKnown RBP eCLIP23.19■■□□□ 1.3
NUP54-216ENST00000514901 RANGAP1P46060 587 aaPredicted RBP23.19■■□□□ 1.3
NUP54-216ENST00000514901 P3H3Q8IVL6 736 aa23.17■■□□□ 1.3
NUP54-216ENST00000514901 SAMD9Q5K651 1589 aa23.17■■□□□ 1.3
NUP54-216ENST00000514901 UACAQ9BZF9 1416 aa23.16■■□□□ 1.3
NUP54-216ENST00000514901 EFCAB5A4FU69 1503 aa23.14■■□□□ 1.3
NUP54-216ENST00000514901 UHRF1BP1LA0JNW5 1464 aa23.13■■□□□ 1.29
NUP54-216ENST00000514901 ADCY10Q96PN6 1610 aa23.11■■□□□ 1.29
NUP54-216ENST00000514901 ABCC2Q92887 1545 aa23.08■■□□□ 1.28
NUP54-216ENST00000514901 FHOD3Q2V2M9 1422 aa23.06■■□□□ 1.28
NUP54-216ENST00000514901 PLB1Q6P1J6 1458 aa23.05■■□□□ 1.28
NUP54-216ENST00000514901 ABCA8O94911 1581 aa23.03■■□□□ 1.28
NUP54-216ENST00000514901 ARHGAP35Q9NRY4 1499 aa23.03■■□□□ 1.28
NUP54-216ENST00000514901 LOC105371045A0A1W2PR82 267 aa23.02■■□□□ 1.28
NUP54-216ENST00000514901 TRHP20396 242 aaPredicted RBP23.02■■□□□ 1.28
NUP54-216ENST00000514901 KDM5BQ9UGL1 1544 aa23■■□□□ 1.27
NUP54-216ENST00000514901 MAPKBP1O60336 1514 aa22.99■■□□□ 1.27
NUP54-216ENST00000514901 FMN1Q68DA7 1419 aa22.98■■□□□ 1.27
NUP54-216ENST00000514901 CLIP1P30622 1438 aa22.97■■□□□ 1.27
NUP54-216ENST00000514901 RAPGEF6Q8TEU7 1601 aa22.93■■□□□ 1.26
NUP54-216ENST00000514901 ASXL2Q76L83 1435 aa22.9■■□□□ 1.26
NUP54-216ENST00000514901 ZCCHC11Q5TAX3 1644 aaKnown RBP22.9■■□□□ 1.26
NUP54-216ENST00000514901 CEP162Q5TB80 1403 aa22.89■■□□□ 1.25
NUP54-216ENST00000514901 ATP10BO94823 1461 aa22.88■■□□□ 1.25
NUP54-216ENST00000514901 ABCC10Q5T3U5 1492 aa22.88■■□□□ 1.25
NUP54-216ENST00000514901 FAM69CQ0P6D2 419 aa22.86■■□□□ 1.25
NUP54-216ENST00000514901 NUP153P49790 1475 aaKnown RBP22.85■■□□□ 1.25
NUP54-216ENST00000514901 ARID3CA6NKF2 412 aa22.84■■□□□ 1.25
NUP54-216ENST00000514901 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.84■■□□□ 1.25
NUP54-216ENST00000514901 HNRNPUL2Q1KMD3 747 aaKnown RBP22.84■■□□□ 1.25
NUP54-216ENST00000514901 ATP1B4Q9UN42 357 aaPredicted RBP22.82■■□□□ 1.24
NUP54-216ENST00000514901 WDR7Q9Y4E6 1490 aa22.8■■□□□ 1.24
NUP54-216ENST00000514901 CASKIN1Q8WXD9 1431 aa22.79■■□□□ 1.24
NUP54-216ENST00000514901 DIP2BQ9P265 1576 aa22.78■■□□□ 1.24
NUP54-216ENST00000514901 PLEKHD1A6NEE1 506 aa22.77■■□□□ 1.24
NUP54-216ENST00000514901 HECW1Q76N89 1606 aa22.77■■□□□ 1.24
NUP54-216ENST00000514901 KIF13AQ9H1H9 1805 aa22.77■■□□□ 1.24
NUP54-216ENST00000514901 EPRSP07814 1512 aaKnown RBP22.76■■□□□ 1.23
NUP54-216ENST00000514901 KCNH8Q96L42 1107 aa22.75■■□□□ 1.23
NUP54-216ENST00000514901 CDK11AQ9UQ88 783 aaPredicted RBP22.75■■□□□ 1.23
NUP54-216ENST00000514901 GLI2P10070 1586 aa22.75■■□□□ 1.23
NUP54-216ENST00000514901 FYCO1Q9BQS8 1478 aa22.72■■□□□ 1.23
NUP54-216ENST00000514901 PCF11O94913 1555 aaKnown RBP22.68■■□□□ 1.22
NUP54-216ENST00000514901 CCDC18Q5T9S5 1454 aa22.68■■□□□ 1.22
NUP54-216ENST00000514901 CDK13Q14004 1512 aaKnown RBP22.67■■□□□ 1.22
NUP54-216ENST00000514901 VPS8Q8N3P4 1428 aa22.62■■□□□ 1.21
NUP54-216ENST00000514901 CD109Q6YHK3 1445 aa22.61■■□□□ 1.21
NUP54-216ENST00000514901 MAP3K4Q9Y6R4 1608 aa22.6■■□□□ 1.21
NUP54-216ENST00000514901 TSPOAP1O95153 1857 aa22.58■■□□□ 1.21
NUP54-216ENST00000514901 CFAP43Q8NDM7 1665 aa22.58■■□□□ 1.2
NUP54-216ENST00000514901 TROQ12816 1431 aaPredicted RBP22.57■■□□□ 1.2
NUP54-216ENST00000514901 LRRIQ1Q96JM4 1722 aa22.57■■□□□ 1.2
NUP54-216ENST00000514901 TEX14Q8IWB6 1497 aa22.56■■□□□ 1.2
NUP54-216ENST00000514901 ABCA9Q8IUA7 1624 aa22.56■■□□□ 1.2
NUP54-216ENST00000514901 MAGI3Q5TCQ9 1506 aa22.55■■□□□ 1.2
NUP54-216ENST00000514901 PPRC1Q5VV67 1664 aaKnown RBP22.5■■□□□ 1.19
NUP54-216ENST00000514901 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.49■■□□□ 1.195e-6■□□□□ 11
NUP54-216ENST00000514901 MTUS2Q5JR59 1369 aa22.48■■□□□ 1.19
NUP54-216ENST00000514901 PHLDB1Q86UU1 1377 aa22.48■■□□□ 1.19
NUP54-216ENST00000514901 KIF14Q15058 1648 aa22.46■■□□□ 1.19
NUP54-216ENST00000514901 APLP2Q06481 763 aa22.46■■□□□ 1.19
NUP54-216ENST00000514901 MAP3K1Q13233 1512 aa22.44■■□□□ 1.18
NUP54-216ENST00000514901 PLCH2O75038 1416 aa22.43■■□□□ 1.18
NUP54-216ENST00000514901 TTC37Q6PGP7 1564 aa22.42■■□□□ 1.18
NUP54-216ENST00000514901 NEO1Q92859 1461 aa22.41■■□□□ 1.18
NUP54-216ENST00000514901 TIAM1Q13009 1591 aa22.4■■□□□ 1.18
NUP54-216ENST00000514901 KDM6BO15054 1643 aa22.39■■□□□ 1.18
NUP54-216ENST00000514901 EFCAB2Q5VUJ9 269 aa22.39■■□□□ 1.17
NUP54-216ENST00000514901 EHBP1L1Q8N3D4 1523 aa22.38■■□□□ 1.17
NUP54-216ENST00000514901 ARAP3Q8WWN8 1544 aa22.37■■□□□ 1.17
NUP54-216ENST00000514901 FANCAO15360 1455 aa22.36■■□□□ 1.17
NUP54-216ENST00000514901 MYO5CQ9NQX4 1742 aa22.34■■□□□ 1.17
NUP54-216ENST00000514901 LRRC9Q6ZRR7 1453 aa22.34■■□□□ 1.17
NUP54-216ENST00000514901 CFAP74Q9C0B2 1584 aa22.33■■□□□ 1.17
NUP54-216ENST00000514901 AKNAQ7Z591 1439 aa22.33■■□□□ 1.17
NUP54-216ENST00000514901 COL17A1Q9UMD9 1497 aaPredicted RBP22.33■■□□□ 1.16
NUP54-216ENST00000514901 CCNB3Q8WWL7 1395 aa22.32■■□□□ 1.16
NUP54-216ENST00000514901 KANK4Q5T7N3 995 aaPredicted RBP22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms