RNA–Protein interactions for RNA: ENST00000514421.1

CCL28-204, Transcript of C-C motif chemokine ligand 28, humanhuman

TSL 3

Gene CCL28, Length 577 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-204ENST00000514421 ARHGEF11O15085 1522 aa13.8□□□□□ -0.2
CCL28-204ENST00000514421 FAM9AQ8IZU1 332 aaPredicted RBP13.8□□□□□ -0.2
CCL28-204ENST00000514421 RAPGEF2Q9Y4G8 1499 aa13.79□□□□□ -0.2
CCL28-204ENST00000514421 CUL7Q14999 1698 aa13.78□□□□□ -0.2
CCL28-204ENST00000514421 EEA1Q15075 1411 aa13.77□□□□□ -0.21
CCL28-204ENST00000514421 CEP170Q5SW79 1584 aa13.77□□□□□ -0.21
CCL28-204ENST00000514421 KIAA0586Q9BVV6 1533 aa13.76□□□□□ -0.21
CCL28-204ENST00000514421 RIMBP3CA6NJZ7 1639 aa13.75□□□□□ -0.21
CCL28-204ENST00000514421 RIMBP3BA6NNM3 1639 aa13.75□□□□□ -0.21
CCL28-204ENST00000514421 RIMBP3Q9UFD9 1639 aa13.75□□□□□ -0.21
CCL28-204ENST00000514421 PRXQ9BXM0 1461 aa13.74□□□□□ -0.21
CCL28-204ENST00000514421 PRG4Q92954 1404 aaPredicted RBP13.73□□□□□ -0.21
CCL28-204ENST00000514421 ARAP1Q96P48 1450 aa13.7□□□□□ -0.22
CCL28-204ENST00000514421 SHROOM2Q13796 1616 aa13.65□□□□□ -0.22
CCL28-204ENST00000514421 ERCC6L2Q5T890 1561 aa13.64□□□□□ -0.23
CCL28-204ENST00000514421 CARMIL2Q6F5E8 1435 aa13.64□□□□□ -0.23
CCL28-204ENST00000514421 UBTFP17480 764 aaKnown RBP13.61□□□□□ -0.23
CCL28-204ENST00000514421 PIAS4Q8N2W9 510 aaPredicted RBP13.61□□□□□ -0.23
CCL28-204ENST00000514421 PTPRGP23470 1445 aa13.61□□□□□ -0.23
CCL28-204ENST00000514421 TTBK1Q5TCY1 1321 aaPredicted RBP13.61□□□□□ -0.23
CCL28-204ENST00000514421 TNIKQ9UKE5 1360 aa13.6□□□□□ -0.23
CCL28-204ENST00000514421 IQGAP2Q13576 1575 aa13.6□□□□□ -0.23
CCL28-204ENST00000514421 NPM1P06748 294 aaKnown RBP eCLIP13.59□□□□□ -0.23
CCL28-204ENST00000514421 EHMT2Q96KQ7 1210 aa13.59□□□□□ -0.23
CCL28-204ENST00000514421 UGGT2Q9NYU1 1516 aa13.57□□□□□ -0.24
CCL28-204ENST00000514421 RANGAP1P46060 587 aaPredicted RBP13.55□□□□□ -0.24
CCL28-204ENST00000514421 P3H3Q8IVL6 736 aa13.55□□□□□ -0.24
CCL28-204ENST00000514421 DISP1Q96F81 1524 aa13.54□□□□□ -0.24
CCL28-204ENST00000514421 TRHP20396 242 aaPredicted RBP13.54□□□□□ -0.24
CCL28-204ENST00000514421 GOLGA3Q08378 1498 aa13.54□□□□□ -0.24
CCL28-204ENST00000514421 KIF21BO75037 1637 aa13.51□□□□□ -0.25
CCL28-204ENST00000514421 UACAQ9BZF9 1416 aa13.48□□□□□ -0.25
CCL28-204ENST00000514421 CTTNBP2Q8WZ74 1663 aa13.46□□□□□ -0.26
CCL28-204ENST00000514421 KIAA0556O60303 1618 aa13.46□□□□□ -0.26
CCL28-204ENST00000514421 UHRF1BP1LA0JNW5 1464 aa13.44□□□□□ -0.26
CCL28-204ENST00000514421 ABCC2Q92887 1545 aa13.4□□□□□ -0.26
CCL28-204ENST00000514421 LOC105371045A0A1W2PR82 267 aa13.4□□□□□ -0.26
CCL28-204ENST00000514421 FAM69CQ0P6D2 419 aa13.4□□□□□ -0.26
CCL28-204ENST00000514421 PLB1Q6P1J6 1458 aa13.39□□□□□ -0.27
CCL28-204ENST00000514421 ADCY10Q96PN6 1610 aa13.39□□□□□ -0.27
CCL28-204ENST00000514421 FHOD3Q2V2M9 1422 aa13.39□□□□□ -0.27
CCL28-204ENST00000514421 SAMD9Q5K651 1589 aa13.37□□□□□ -0.27
CCL28-204ENST00000514421 KDM5BQ9UGL1 1544 aa13.36□□□□□ -0.27
CCL28-204ENST00000514421 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.36□□□□□ -0.27
CCL28-204ENST00000514421 HNRNPUL2Q1KMD3 747 aaKnown RBP13.36□□□□□ -0.27
CCL28-204ENST00000514421 EFCAB5A4FU69 1503 aa13.35□□□□□ -0.27
CCL28-204ENST00000514421 ARID3CA6NKF2 412 aa13.35□□□□□ -0.27
CCL28-204ENST00000514421 MAPKBP1O60336 1514 aa13.34□□□□□ -0.27
CCL28-204ENST00000514421 ARHGAP35Q9NRY4 1499 aa13.34□□□□□ -0.27
CCL28-204ENST00000514421 ABCA8O94911 1581 aa13.33□□□□□ -0.28
CCL28-204ENST00000514421 ASXL2Q76L83 1435 aa13.33□□□□□ -0.28
CCL28-204ENST00000514421 KCNH8Q96L42 1107 aa13.33□□□□□ -0.28
CCL28-204ENST00000514421 ATP1B4Q9UN42 357 aaPredicted RBP13.33□□□□□ -0.28
CCL28-204ENST00000514421 ABCC10Q5T3U5 1492 aa13.33□□□□□ -0.28
CCL28-204ENST00000514421 FMN1Q68DA7 1419 aa13.31□□□□□ -0.28
CCL28-204ENST00000514421 ATP10BO94823 1461 aa13.31□□□□□ -0.28
CCL28-204ENST00000514421 PLEKHD1A6NEE1 506 aa13.31□□□□□ -0.28
CCL28-204ENST00000514421 CLIP1P30622 1438 aa13.3□□□□□ -0.28
CCL28-204ENST00000514421 CDK11AQ9UQ88 783 aaPredicted RBP13.26□□□□□ -0.29
CCL28-204ENST00000514421 NUP153P49790 1475 aaKnown RBP13.25□□□□□ -0.29
CCL28-204ENST00000514421 RAPGEF6Q8TEU7 1601 aa13.24□□□□□ -0.29
CCL28-204ENST00000514421 WDR7Q9Y4E6 1490 aa13.24□□□□□ -0.29
CCL28-204ENST00000514421 ZCCHC11Q5TAX3 1644 aaKnown RBP13.24□□□□□ -0.29
CCL28-204ENST00000514421 EPRSP07814 1512 aaKnown RBP13.23□□□□□ -0.29
CCL28-204ENST00000514421 PLPPR3Q6T4P5 718 aa13.23□□□□□ -0.29
CCL28-204ENST00000514421 CEP162Q5TB80 1403 aa13.22□□□□□ -0.29
CCL28-204ENST00000514421 DIP2BQ9P265 1576 aa13.21□□□□□ -0.29
CCL28-204ENST00000514421 CASKIN1Q8WXD9 1431 aa13.21□□□□□ -0.3
CCL28-204ENST00000514421 GLI2P10070 1586 aa13.2□□□□□ -0.3
CCL28-204ENST00000514421 CD109Q6YHK3 1445 aa13.19□□□□□ -0.3
CCL28-204ENST00000514421 PPP6R1Q9UPN7 881 aa13.18□□□□□ -0.3
CCL28-204ENST00000514421 KIF13AQ9H1H9 1805 aa13.18□□□□□ -0.3
CCL28-204ENST00000514421 ADRA2BP18089 450 aa13.14□□□□□ -0.31
CCL28-204ENST00000514421 CDK13Q14004 1512 aaKnown RBP13.13□□□□□ -0.31
CCL28-204ENST00000514421 HECW1Q76N89 1606 aa13.13□□□□□ -0.31
CCL28-204ENST00000514421 CCDC18Q5T9S5 1454 aa13.11□□□□□ -0.31
CCL28-204ENST00000514421 TEX14Q8IWB6 1497 aa13.11□□□□□ -0.31
CCL28-204ENST00000514421 FYCO1Q9BQS8 1478 aa13.11□□□□□ -0.31
CCL28-204ENST00000514421 MAGI3Q5TCQ9 1506 aa13.11□□□□□ -0.31
CCL28-204ENST00000514421 PHLDB1Q86UU1 1377 aa13.1□□□□□ -0.31
CCL28-204ENST00000514421 TROQ12816 1431 aaPredicted RBP13.1□□□□□ -0.31
CCL28-204ENST00000514421 TSPOAP1O95153 1857 aa13.08□□□□□ -0.32
CCL28-204ENST00000514421 EFCAB2Q5VUJ9 269 aa13.08□□□□□ -0.32
CCL28-204ENST00000514421 MAP3K4Q9Y6R4 1608 aa13.08□□□□□ -0.32
CCL28-204ENST00000514421 VPS8Q8N3P4 1428 aa13.07□□□□□ -0.32
CCL28-204ENST00000514421 PCF11O94913 1555 aaKnown RBP13.07□□□□□ -0.32
CCL28-204ENST00000514421 APLP2Q06481 763 aa13.06□□□□□ -0.32
CCL28-204ENST00000514421 PLCH2O75038 1416 aa13.05□□□□□ -0.32
CCL28-204ENST00000514421 ABCA9Q8IUA7 1624 aa13.05□□□□□ -0.32
CCL28-204ENST00000514421 CFAP43Q8NDM7 1665 aa13.05□□□□□ -0.32
CCL28-204ENST00000514421 MTUS2Q5JR59 1369 aa13.05□□□□□ -0.32
CCL28-204ENST00000514421 COL17A1Q9UMD9 1497 aaPredicted RBP13.04□□□□□ -0.32
CCL28-204ENST00000514421 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.03□□□□□ -0.32
CCL28-204ENST00000514421 PPRC1Q5VV67 1664 aaKnown RBP13.02□□□□□ -0.32
CCL28-204ENST00000514421 RAPGEF3O95398 923 aa13.02□□□□□ -0.33
CCL28-204ENST00000514421 AKNAQ7Z591 1439 aa13.02□□□□□ -0.33
CCL28-204ENST00000514421 NEO1Q92859 1461 aa13.02□□□□□ -0.33
CCL28-204ENST00000514421 KDM6BO15054 1643 aa13□□□□□ -0.33
CCL28-204ENST00000514421 ARAP3Q8WWN8 1544 aa13□□□□□ -0.33
CCL28-204ENST00000514421 FANCAO15360 1455 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms