RNA–Protein interactions for RNA: ENST00000512055.5

CPNE4-209, Transcript of copine 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CPNE4, Length 5,431 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-209ENST00000512055 TNNT2P45379 298 aaPredicted RBP14.82□□□□□ -0.04
CPNE4-209ENST00000512055 NBR1Q14596 966 aa14.81□□□□□ -0.04
CPNE4-209ENST00000512055 SCAF1Q9H7N4 1312 aaKnown RBP14.8□□□□□ -0.04
CPNE4-209ENST00000512055 ARXQ96QS3 562 aa14.79□□□□□ -0.04
CPNE4-209ENST00000512055 BCL11AQ9H165 835 aa14.79□□□□□ -0.04
CPNE4-209ENST00000512055 RAPGEF2Q9Y4G8 1499 aa14.78□□□□□ -0.04
CPNE4-209ENST00000512055 CDK11BP21127 795 aaKnown RBP14.77□□□□□ -0.05
CPNE4-209ENST00000512055 AMER1Q5JTC6 1135 aaPredicted RBP14.76□□□□□ -0.05
CPNE4-209ENST00000512055 ZBTB47Q9UFB7 747 aaPredicted RBP14.75□□□□□ -0.05
CPNE4-209ENST00000512055 CCNB3Q8WWL7 1395 aa14.75□□□□□ -0.05
CPNE4-209ENST00000512055 SIN3AQ96ST3 1273 aa14.74□□□□□ -0.05
CPNE4-209ENST00000512055 CADPSQ9ULU8 1353 aa14.72□□□□□ -0.05
CPNE4-209ENST00000512055 TDRD9Q8NDG6 1382 aaKnown RBP14.71□□□□□ -0.06
CPNE4-209ENST00000512055 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.69□□□□□ -0.06
CPNE4-209ENST00000512055 FHAD1B1AJZ9 1412 aa14.68□□□□□ -0.06
CPNE4-209ENST00000512055 TSPY4P0CV99 314 aa14.67□□□□□ -0.06
CPNE4-209ENST00000512055 TSPY10P0CW01 314 aa14.67□□□□□ -0.06
CPNE4-209ENST00000512055 EIF4G1Q04637 1599 aaKnown RBP14.66□□□□□ -0.06
CPNE4-209ENST00000512055 HNRNPUQ00839 825 aaKnown RBP eCLIP14.65□□□□□ -0.06
CPNE4-209ENST00000512055 KDM2AQ9Y2K7 1162 aa14.65□□□□□ -0.06
CPNE4-209ENST00000512055 FKBP8Q14318 412 aa14.64□□□□□ -0.07
CPNE4-209ENST00000512055 FAM9BQ8IZU0 186 aa14.64□□□□□ -0.07
CPNE4-209ENST00000512055 PLEKHD1A6NEE1 506 aa14.62□□□□□ -0.07
CPNE4-209ENST00000512055 HSP90AA1P07900 732 aaKnown RBP14.62□□□□□ -0.07
CPNE4-209ENST00000512055 ERCC6Q03468 1493 aa14.62□□□□□ -0.07
CPNE4-209ENST00000512055 CFDP1Q9UEE9 299 aaPredicted RBP14.62□□□□□ -0.07
CPNE4-209ENST00000512055 KCNH8Q96L42 1107 aa14.61□□□□□ -0.07
CPNE4-209ENST00000512055 RTN4Q9NQC3 1192 aaKnown RBP14.59□□□□□ -0.07
CPNE4-209ENST00000512055 PDS5BQ9NTI5 1447 aa14.59□□□□□ -0.07
CPNE4-209ENST00000512055 EIF4G2P78344 907 aaKnown RBP eCLIP14.58□□□□□ -0.08
CPNE4-209ENST00000512055 FHOD3Q2V2M9 1422 aa14.56□□□□□ -0.08
CPNE4-209ENST00000512055 CHGAP10645 457 aaKnown RBP14.55□□□□□ -0.08
CPNE4-209ENST00000512055 CANXP27824 592 aaKnown RBP14.55□□□□□ -0.08
CPNE4-209ENST00000512055 SETD5Q9C0A6 1442 aa14.55□□□□□ -0.08
CPNE4-209ENST00000512055 RAB3GAP2Q9H2M9 1393 aa14.54□□□□□ -0.08
CPNE4-209ENST00000512055 FANCD2Q9BXW9 1451 aa14.54□□□□□ -0.08
CPNE4-209ENST00000512055 NCAPD3P42695 1498 aa14.53□□□□□ -0.08
CPNE4-209ENST00000512055 ARHGAP35Q9NRY4 1499 aa14.53□□□□□ -0.08
CPNE4-209ENST00000512055 MRS2Q9HD23 443 aa14.53□□□□□ -0.08
CPNE4-209ENST00000512055 SALL2Q9Y467 1007 aaPredicted RBP14.52□□□□□ -0.09
CPNE4-209ENST00000512055 NPM1P06748 294 aaKnown RBP eCLIP14.52□□□□□ -0.09
CPNE4-209ENST00000512055 SYNJ1O43426 1573 aa14.51□□□□□ -0.09
CPNE4-209ENST00000512055 NAP1L5Q96NT1 182 aaPredicted RBP14.51□□□□□ -0.09
CPNE4-209ENST00000512055 IGF1RP08069 1367 aa14.5□□□□□ -0.09
CPNE4-209ENST00000512055 RGL3Q3MIN7 710 aa14.5□□□□□ -0.09
CPNE4-209ENST00000512055 TRIM44Q96DX7 344 aaPredicted RBP14.49□□□□□ -0.09
CPNE4-209ENST00000512055 FMN1Q68DA7 1419 aa14.48□□□□□ -0.09
CPNE4-209ENST00000512055 FGD5Q6ZNL6 1462 aa14.48□□□□□ -0.09
CPNE4-209ENST00000512055 TMC1Q8TDI8 760 aa14.47□□□□□ -0.09
CPNE4-209ENST00000512055 IRX6P78412 446 aaPredicted RBP14.47□□□□□ -0.09
CPNE4-209ENST00000512055 FOXD1Q16676 465 aa14.47□□□□□ -0.09
CPNE4-209ENST00000512055 RAD54L2Q9Y4B4 1467 aa14.46□□□□□ -0.1
CPNE4-209ENST00000512055 SENP3-EIF4A1A0A087X0R7 540 aa14.46□□□□□ -0.1
CPNE4-209ENST00000512055 BICRAQ9NZM4 1560 aa14.44□□□□□ -0.1
CPNE4-209ENST00000512055 ANP32EQ9BTT0 268 aa14.43□□□□□ -0.1
CPNE4-209ENST00000512055 KIF21BO75037 1637 aa14.43□□□□□ -0.1
CPNE4-209ENST00000512055 UPF2Q9HAU5 1272 aaKnown RBP14.42□□□□□ -0.1
CPNE4-209ENST00000512055 ERICH6BQ5W0A0 696 aa14.42□□□□□ -0.1
CPNE4-209ENST00000512055 DHX57Q6P158 1386 aaKnown RBP14.42□□□□□ -0.1
CPNE4-209ENST00000512055 SENP3Q9H4L4 574 aaPredicted RBP14.39□□□□□ -0.11
CPNE4-209ENST00000512055 CFTRP13569 1480 aa14.39□□□□□ -0.11
CPNE4-209ENST00000512055 TIMELESSQ9UNS1 1208 aa14.38□□□□□ -0.11
CPNE4-209ENST00000512055 CARD11Q9BXL7 1154 aa14.38□□□□□ -0.11
CPNE4-209ENST00000512055 DNTTIP2Q5QJE6 756 aaKnown RBP14.36□□□□□ -0.11
CPNE4-209ENST00000512055 NEFMP07197 916 aa14.36□□□□□ -0.11
CPNE4-209ENST00000512055 NCLP19338 710 aaKnown RBP14.36□□□□□ -0.11
CPNE4-209ENST00000512055 SLC24A1O60721 1099 aa14.35□□□□□ -0.11
CPNE4-209ENST00000512055 MPHOSPH9Q99550 1183 aa14.34□□□□□ -0.11
CPNE4-209ENST00000512055 STAG3Q9UJ98 1225 aa14.34□□□□□ -0.11
CPNE4-209ENST00000512055 ARAP1Q96P48 1450 aa14.34□□□□□ -0.11
CPNE4-209ENST00000512055 PPP1R15AO75807 674 aaPredicted RBP14.34□□□□□ -0.11
CPNE4-209ENST00000512055 CUX1P39880 1505 aa14.33□□□□□ -0.12
CPNE4-209ENST00000512055 NESP48681 1621 aa14.33□□□□□ -0.12
CPNE4-209ENST00000512055 HSPA5P11021 654 aaKnown RBP14.33□□□□□ -0.12
CPNE4-209ENST00000512055 TOP2BQ02880 1626 aa14.32□□□□□ -0.12
CPNE4-209ENST00000512055 PKD2Q13563 968 aa14.31□□□□□ -0.12
CPNE4-209ENST00000512055 GAPVD1Q14C86 1478 aa14.31□□□□□ -0.12
CPNE4-209ENST00000512055 CARMIL2Q6F5E8 1435 aa14.31□□□□□ -0.12
CPNE4-209ENST00000512055 DCAF11Q8TEB1 546 aa14.31□□□□□ -0.12
CPNE4-209ENST00000512055 SUPT16HQ9Y5B9 1047 aaKnown RBP14.31□□□□□ -0.12
CPNE4-209ENST00000512055 PLPPR3Q6T4P5 718 aa14.3□□□□□ -0.12
CPNE4-209ENST00000512055 PRXQ9BXM0 1461 aa14.3□□□□□ -0.12
CPNE4-209ENST00000512055 ESF1Q9H501 851 aaKnown RBP14.29□□□□□ -0.12
CPNE4-209ENST00000512055 JPH4Q96JJ6 628 aa14.29□□□□□ -0.12
CPNE4-209ENST00000512055 ARID4BQ4LE39 1312 aaPredicted RBP14.28□□□□□ -0.12
CPNE4-209ENST00000512055 HMGXB3Q12766 1538 aa14.28□□□□□ -0.12
CPNE4-209ENST00000512055 PHLDB1Q86UU1 1377 aa14.28□□□□□ -0.12
CPNE4-209ENST00000512055 PTMAP06454 111 aaKnown RBP14.28□□□□□ -0.12
CPNE4-209ENST00000512055 CCDC136Q96JN2 1154 aa14.28□□□□□ -0.12
CPNE4-209ENST00000512055 UNC13AQ9UPW8 1703 aa14.27□□□□□ -0.12
CPNE4-209ENST00000512055 ERICH3Q5RHP9 1530 aa14.27□□□□□ -0.12
CPNE4-209ENST00000512055 WDR43Q15061 677 aaKnown RBP eCLIP14.26□□□□□ -0.13
CPNE4-209ENST00000512055 L3MBTL2Q969R5 705 aa14.26□□□□□ -0.13
CPNE4-209ENST00000512055 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.25□□□□□ -0.13
CPNE4-209ENST00000512055 CC2D2AQ9P2K1 1620 aa14.25□□□□□ -0.13
CPNE4-209ENST00000512055 AQRO60306 1485 aaKnown RBP eCLIP14.25□□□□□ -0.13
CPNE4-209ENST00000512055 HNRNPMP52272 730 aaKnown RBP eCLIP14.24□□□□□ -0.13
CPNE4-209ENST00000512055 TNNT3P45378 269 aaPredicted RBP14.23□□□□□ -0.13
CPNE4-209ENST00000512055 LRRC9Q6ZRR7 1453 aa14.22□□□□□ -0.13
CPNE4-209ENST00000512055 NUP155O75694 1391 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms