RNA–Protein interactions for RNA: ENST00000510335.5

PTPN20-224, Transcript of protein tyrosine phosphatase, non-receptor type 20, humanhuman

TSL 1 (best)

Gene PTPN20, Length 1,153 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN20-224ENST00000510335 FBLN2P98095 1184 aa12.63□□□□□ -0.39
PTPN20-224ENST00000510335 RUSC2Q8N2Y8 1516 aa12.62□□□□□ -0.39
PTPN20-224ENST00000510335 ERICH3Q5RHP9 1530 aa12.62□□□□□ -0.39
PTPN20-224ENST00000510335 MYT1Q01538 1121 aa12.61□□□□□ -0.39
PTPN20-224ENST00000510335 BIVM-ERCC5R4GMW8 1640 aa12.6□□□□□ -0.39
PTPN20-224ENST00000510335 TOP2BQ02880 1626 aa12.59□□□□□ -0.39
PTPN20-224ENST00000510335 NEUROD1Q13562 356 aa12.59□□□□□ -0.39
PTPN20-224ENST00000510335 CLIP1P30622 1438 aa12.59□□□□□ -0.39
PTPN20-224ENST00000510335 ATAD2BQ9ULI0 1458 aa12.59□□□□□ -0.39
PTPN20-224ENST00000510335 CLSPNQ9HAW4 1339 aa12.58□□□□□ -0.4
PTPN20-224ENST00000510335 ZNF316A6NFI3 1004 aaPredicted RBP12.57□□□□□ -0.4
PTPN20-224ENST00000510335 SPDYE4A6NLX3 237 aa12.56□□□□□ -0.4
PTPN20-224ENST00000510335 UBTFP17480 764 aaKnown RBP12.5□□□□□ -0.41
PTPN20-224ENST00000510335 ZBTB12Q9Y330 459 aaPredicted RBP12.5□□□□□ -0.41
PTPN20-224ENST00000510335 CUX2O14529 1486 aa12.5□□□□□ -0.41
PTPN20-224ENST00000510335 PRXQ9BXM0 1461 aa12.5□□□□□ -0.41
PTPN20-224ENST00000510335 HMGXB3Q12766 1538 aa12.5□□□□□ -0.41
PTPN20-224ENST00000510335 RAPGEF2Q9Y4G8 1499 aa12.48□□□□□ -0.41
PTPN20-224ENST00000510335 GTF3C3Q9Y5Q9 886 aa12.47□□□□□ -0.41
PTPN20-224ENST00000510335 RRBP1Q9P2E9 1410 aaKnown RBP12.44□□□□□ -0.42
PTPN20-224ENST00000510335 ARAP1Q96P48 1450 aa12.43□□□□□ -0.42
PTPN20-224ENST00000510335 MAP3K1Q13233 1512 aa12.41□□□□□ -0.42
PTPN20-224ENST00000510335 NCAPD3P42695 1498 aa12.39□□□□□ -0.43
PTPN20-224ENST00000510335 OSCARQ8IYS5 282 aa12.37□□□□□ -0.43
PTPN20-224ENST00000510335 PROM2Q8N271 834 aa12.37□□□□□ -0.43
PTPN20-224ENST00000510335 DHX57Q6P158 1386 aaKnown RBP12.36□□□□□ -0.43
PTPN20-224ENST00000510335 PRDM2Q13029 1718 aa12.35□□□□□ -0.43
PTPN20-224ENST00000510335 CUX1P39880 1505 aa12.33□□□□□ -0.44
PTPN20-224ENST00000510335 KIF27Q86VH2 1401 aa12.33□□□□□ -0.44
PTPN20-224ENST00000510335 CFTRP13569 1480 aa12.32□□□□□ -0.44
PTPN20-224ENST00000510335 ZNF692Q9BU19 519 aaPredicted RBP12.31□□□□□ -0.44
PTPN20-224ENST00000510335 MIER1Q8N108 512 aa12.28□□□□□ -0.44
PTPN20-224ENST00000510335 TTBK1Q5TCY1 1321 aaPredicted RBP12.28□□□□□ -0.44
PTPN20-224ENST00000510335 ARHGAP35Q9NRY4 1499 aa12.27□□□□□ -0.45
PTPN20-224ENST00000510335 PABPN1Q86U42 306 aaKnown RBP eCLIP12.26□□□□□ -0.45
PTPN20-224ENST00000510335 RTN4Q9NQC3 1192 aaKnown RBP12.26□□□□□ -0.45
PTPN20-224ENST00000510335 SPDYE2BA6NHP3 402 aa12.25□□□□□ -0.45
PTPN20-224ENST00000510335 SPDYE6P0CI01 402 aa12.25□□□□□ -0.45
PTPN20-224ENST00000510335 SPDYE2Q495Y8 402 aa12.25□□□□□ -0.45
PTPN20-224ENST00000510335 CCNB3Q8WWL7 1395 aa12.25□□□□□ -0.45
PTPN20-224ENST00000510335 TIAM1Q13009 1591 aa12.25□□□□□ -0.45
PTPN20-224ENST00000510335 FBXO3Q9UK99 471 aa12.24□□□□□ -0.45
PTPN20-224ENST00000510335 CFAP43Q8NDM7 1665 aa12.23□□□□□ -0.45
PTPN20-224ENST00000510335 SSUH2Q9Y2M2 353 aa12.21□□□□□ -0.45
PTPN20-224ENST00000510335 MAPKBP1O60336 1514 aa12.19□□□□□ -0.46
PTPN20-224ENST00000510335 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.18□□□□□ -0.46
PTPN20-224ENST00000510335 AMER1Q5JTC6 1135 aaPredicted RBP12.17□□□□□ -0.46
PTPN20-224ENST00000510335 EFCAB5A4FU69 1503 aa12.16□□□□□ -0.46
PTPN20-224ENST00000510335 AQRO60306 1485 aaKnown RBP eCLIP12.15□□□□□ -0.46
PTPN20-224ENST00000510335 FHAD1B1AJZ9 1412 aa12.15□□□□□ -0.46
PTPN20-224ENST00000510335 LRRC9Q6ZRR7 1453 aa12.14□□□□□ -0.47
PTPN20-224ENST00000510335 KANK4Q5T7N3 995 aaPredicted RBP12.14□□□□□ -0.47
PTPN20-224ENST00000510335 VASPP50552 380 aaPredicted RBP12.13□□□□□ -0.47
PTPN20-224ENST00000510335 YTHDC1Q96MU7 727 aaKnown RBP12.13□□□□□ -0.47
PTPN20-224ENST00000510335 TIMELESSQ9UNS1 1208 aa12.13□□□□□ -0.47
PTPN20-224ENST00000510335 FYCO1Q9BQS8 1478 aa12.11□□□□□ -0.47
PTPN20-224ENST00000510335 IGF1RP08069 1367 aa12.11□□□□□ -0.47
PTPN20-224ENST00000510335 SETD5Q9C0A6 1442 aa12.11□□□□□ -0.47
PTPN20-224ENST00000510335 CC2D2AQ9P2K1 1620 aa12.1□□□□□ -0.47
PTPN20-224ENST00000510335 RAB3GAP2Q9H2M9 1393 aa12.09□□□□□ -0.47
PTPN20-224ENST00000510335 PCF11O94913 1555 aaKnown RBP12.08□□□□□ -0.48
PTPN20-224ENST00000510335 CUL7Q14999 1698 aa12.07□□□□□ -0.48
PTPN20-224ENST00000510335 SUPT16HQ9Y5B9 1047 aaKnown RBP12.07□□□□□ -0.48
PTPN20-224ENST00000510335 FGD5Q6ZNL6 1462 aa12.07□□□□□ -0.48
PTPN20-224ENST00000510335 CADPSQ9ULU8 1353 aa12.05□□□□□ -0.48
PTPN20-224ENST00000510335 THOC2Q8NI27 1593 aaKnown RBP12.05□□□□□ -0.48
PTPN20-224ENST00000510335 CARMIL1Q5VZK9 1371 aa12.05□□□□□ -0.48
PTPN20-224ENST00000510335 CASKIN1Q8WXD9 1431 aa12.04□□□□□ -0.48
PTPN20-224ENST00000510335 IFNLR1Q8IU57 520 aaPredicted RBP12.04□□□□□ -0.48
PTPN20-224ENST00000510335 ABCA10Q8WWZ4 1543 aa12.04□□□□□ -0.48
PTPN20-224ENST00000510335 DNMBPQ6XZF7 1577 aa12.04□□□□□ -0.48
PTPN20-224ENST00000510335 PHLDB1Q86UU1 1377 aa12.02□□□□□ -0.49
PTPN20-224ENST00000510335 CTTNBP2Q8WZ74 1663 aa12□□□□□ -0.49
PTPN20-224ENST00000510335 KIF21AQ7Z4S6 1674 aa12□□□□□ -0.49
PTPN20-224ENST00000510335 WDR97A6NE52 1622 aa11.98□□□□□ -0.49
PTPN20-224ENST00000510335 STAG3Q9UJ98 1225 aa11.98□□□□□ -0.49
PTPN20-224ENST00000510335 SAMD9Q5K651 1589 aa11.97□□□□□ -0.49
PTPN20-224ENST00000510335 CCER2I3L3R5 266 aa11.97□□□□□ -0.49
PTPN20-224ENST00000510335 SNAPC4Q5SXM2 1469 aa11.96□□□□□ -0.49
PTPN20-224ENST00000510335 FMN1Q68DA7 1419 aa11.96□□□□□ -0.49
PTPN20-224ENST00000510335 HFM1A2PYH4 1435 aa11.95□□□□□ -0.5
PTPN20-224ENST00000510335 RBM42Q9BTD8 480 aaKnown RBP11.95□□□□□ -0.5
PTPN20-224ENST00000510335 FGD6Q6ZV73 1430 aa11.94□□□□□ -0.5
PTPN20-224ENST00000510335 FANCD2Q9BXW9 1451 aa11.93□□□□□ -0.5
PTPN20-224ENST00000510335 AKNAQ7Z591 1439 aa11.93□□□□□ -0.5
PTPN20-224ENST00000510335 UACAQ9BZF9 1416 aa11.93□□□□□ -0.5
PTPN20-224ENST00000510335 ARHGEF11O15085 1522 aa11.92□□□□□ -0.5
PTPN20-224ENST00000510335 PPP1R15AO75807 674 aaPredicted RBP11.92□□□□□ -0.5
PTPN20-224ENST00000510335 RANGAP1P46060 587 aaPredicted RBP11.92□□□□□ -0.5
PTPN20-224ENST00000510335 AKT1S1Q96B36 256 aa11.92□□□□□ -0.5
PTPN20-224ENST00000510335 PTPN23Q9H3S7 1636 aa11.92□□□□□ -0.5
PTPN20-224ENST00000510335 EHBP1L1Q8N3D4 1523 aa11.91□□□□□ -0.5
PTPN20-224ENST00000510335 TSHZ2Q9NRE2 1034 aa11.91□□□□□ -0.5
PTPN20-224ENST00000510335 TOPBP1Q92547 1522 aa11.91□□□□□ -0.5
PTPN20-224ENST00000510335 POLA1P09884 1462 aaPredicted RBP11.9□□□□□ -0.5
PTPN20-224ENST00000510335 ABCA5Q8WWZ7 1642 aa11.9□□□□□ -0.5
PTPN20-224ENST00000510335 CCDC18Q5T9S5 1454 aa11.89□□□□□ -0.51
PTPN20-224ENST00000510335 PLCD3Q8N3E9 789 aa11.89□□□□□ -0.51
PTPN20-224ENST00000510335 GRIN2BQ13224 1484 aa11.89□□□□□ -0.51
PTPN20-224ENST00000510335 GCC2Q8IWJ2 1684 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms