RNA–Protein interactions for RNA: ENST00000508474.5

UBE2D3-224, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 2

Gene UBE2D3, Length 4,819 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-224ENST00000508474 WDR43Q15061 677 aaKnown RBP eCLIP9.6□□□□□ -0.87
UBE2D3-224ENST00000508474 CLIP1P30622 1438 aa9.58□□□□□ -0.88
UBE2D3-224ENST00000508474 CEP162Q5TB80 1403 aa9.58□□□□□ -0.88
UBE2D3-224ENST00000508474 SALL2Q9Y467 1007 aaPredicted RBP9.58□□□□□ -0.88
UBE2D3-224ENST00000508474 PTMAP06454 111 aaKnown RBP9.57□□□□□ -0.88
UBE2D3-224ENST00000508474 RSPH6AQ9H0K4 717 aa9.57□□□□□ -0.88
UBE2D3-224ENST00000508474 DNTTIP2Q5QJE6 756 aaKnown RBP9.56□□□□□ -0.88
UBE2D3-224ENST00000508474 USP35Q9P2H5 1018 aa9.56□□□□□ -0.88
UBE2D3-224ENST00000508474 TIMELESSQ9UNS1 1208 aa9.55□□□□□ -0.88
UBE2D3-224ENST00000508474 GOLGA3Q08378 1498 aa9.55□□□□□ -0.88
UBE2D3-224ENST00000508474 B4GALNT3Q6L9W6 998 aa9.54□□□□□ -0.88
UBE2D3-224ENST00000508474 PNNQ9H307 717 aaKnown RBP9.54□□□□□ -0.88
UBE2D3-224ENST00000508474 TNIKQ9UKE5 1360 aa9.53□□□□□ -0.88
UBE2D3-224ENST00000508474 IPO9Q96P70 1041 aaKnown RBP9.53□□□□□ -0.88
UBE2D3-224ENST00000508474 MSNP26038 577 aaKnown RBP9.52□□□□□ -0.88
UBE2D3-224ENST00000508474 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.52□□□□□ -0.88
UBE2D3-224ENST00000508474 FANCIQ9NVI1 1328 aa9.52□□□□□ -0.89
UBE2D3-224ENST00000508474 MYH16Q9H6N6 1097 aa9.52□□□□□ -0.89
UBE2D3-224ENST00000508474 HIRIP3Q9BW71 556 aaPredicted RBP9.52□□□□□ -0.89
UBE2D3-224ENST00000508474 PTMSP20962 102 aa9.51□□□□□ -0.89
UBE2D3-224ENST00000508474 TCERG1O14776 1098 aaKnown RBP9.51□□□□□ -0.89
UBE2D3-224ENST00000508474 P3H3Q8IVL6 736 aa9.5□□□□□ -0.89
UBE2D3-224ENST00000508474 CHAF1AQ13111 956 aaPredicted RBP9.48□□□□□ -0.89
UBE2D3-224ENST00000508474 HSP90AA2PQ14568 343 aaPredicted RBP9.47□□□□□ -0.89
UBE2D3-224ENST00000508474 CASC1Q6TDU7 716 aa9.44□□□□□ -0.9
UBE2D3-224ENST00000508474 HSCBQ8IWL3 235 aa9.44□□□□□ -0.9
UBE2D3-224ENST00000508474 RGS3P49796 1198 aa9.43□□□□□ -0.9
UBE2D3-224ENST00000508474 HSP90AB1P08238 724 aaKnown RBP9.43□□□□□ -0.9
UBE2D3-224ENST00000508474 GOLGA6L3A6NEY3 463 aa9.43□□□□□ -0.9
UBE2D3-224ENST00000508474 MTUS2Q5JR59 1369 aa9.42□□□□□ -0.9
UBE2D3-224ENST00000508474 GOLGA6L6A8MZA4 724 aa9.42□□□□□ -0.9
UBE2D3-224ENST00000508474 SLC24A1O60721 1099 aa9.42□□□□□ -0.9
UBE2D3-224ENST00000508474 CEP164Q9UPV0 1460 aa9.42□□□□□ -0.9
UBE2D3-224ENST00000508474 MS4A1P11836 297 aa9.42□□□□□ -0.9
UBE2D3-224ENST00000508474 ZNF777Q9ULD5 760 aaPredicted RBP9.42□□□□□ -0.9
UBE2D3-224ENST00000508474 VSIG10Q8N0Z9 540 aa9.41□□□□□ -0.9
UBE2D3-224ENST00000508474 RSF1Q96T23 1441 aaPredicted RBP9.41□□□□□ -0.9
UBE2D3-224ENST00000508474 GBP4Q96PP9 640 aa9.41□□□□□ -0.9
UBE2D3-224ENST00000508474 CHMP4BQ9H444 224 aaKnown RBP9.41□□□□□ -0.9
UBE2D3-224ENST00000508474 GSE1Q14687 1217 aa9.4□□□□□ -0.9
UBE2D3-224ENST00000508474 NRDCO43847 1150 aa9.4□□□□□ -0.91
UBE2D3-224ENST00000508474 CFAP44Q96MT7 982 aa9.4□□□□□ -0.91
UBE2D3-224ENST00000508474 CHIC2Q9UKJ5 165 aa9.4□□□□□ -0.91
UBE2D3-224ENST00000508474 ZRSR1Q15695 479 aaKnown RBP9.39□□□□□ -0.91
UBE2D3-224ENST00000508474 CDCA8Q53HL2 280 aa9.38□□□□□ -0.91
UBE2D3-224ENST00000508474 FTSJ3Q8IY81 847 aaKnown RBP9.38□□□□□ -0.91
UBE2D3-224ENST00000508474 KIAA2012Q0VF49 1180 aa9.37□□□□□ -0.91
UBE2D3-224ENST00000508474 PRKCSHP14314 528 aaPredicted RBP9.36□□□□□ -0.91
UBE2D3-224ENST00000508474 CCNB3Q8WWL7 1395 aa9.36□□□□□ -0.91
UBE2D3-224ENST00000508474 SCRIBQ14160 1630 aa9.36□□□□□ -0.91
UBE2D3-224ENST00000508474 SIN3AQ96ST3 1273 aa9.36□□□□□ -0.91
UBE2D3-224ENST00000508474 KDM2AQ9Y2K7 1162 aa9.35□□□□□ -0.91
UBE2D3-224ENST00000508474 ARID4BQ4LE39 1312 aaPredicted RBP9.35□□□□□ -0.91
UBE2D3-224ENST00000508474 CFAP53Q96M91 514 aa9.35□□□□□ -0.91
UBE2D3-224ENST00000508474 NUDCQ9Y266 331 aa9.35□□□□□ -0.91
UBE2D3-224ENST00000508474 KNSTRNQ9Y448 316 aa9.35□□□□□ -0.91
UBE2D3-224ENST00000508474 PLCB2Q00722 1185 aa9.33□□□□□ -0.92
UBE2D3-224ENST00000508474 TNNT3P45378 269 aaPredicted RBP9.33□□□□□ -0.92
UBE2D3-224ENST00000508474 RCAN3Q9UKA8 241 aa9.33□□□□□ -0.92
UBE2D3-224ENST00000508474 SETD5Q9C0A6 1442 aa9.32□□□□□ -0.92
UBE2D3-224ENST00000508474 TSPY4P0CV99 314 aa9.32□□□□□ -0.92
UBE2D3-224ENST00000508474 TSPY10P0CW01 314 aa9.32□□□□□ -0.92
UBE2D3-224ENST00000508474 CARD11Q9BXL7 1154 aa9.32□□□□□ -0.92
UBE2D3-224ENST00000508474 RRP7BPQ9NSQ0 103 aa9.32□□□□□ -0.92
UBE2D3-224ENST00000508474 RB1CC1Q8TDY2 1594 aa9.32□□□□□ -0.92
UBE2D3-224ENST00000508474 ARID3CA6NKF2 412 aa9.31□□□□□ -0.92
UBE2D3-224ENST00000508474 PABPN1Q86U42 306 aaKnown RBP eCLIP9.31□□□□□ -0.92
UBE2D3-224ENST00000508474 PKNOX2Q96KN3 472 aa9.31□□□□□ -0.92
UBE2D3-224ENST00000508474 SYAP1Q96A49 352 aaPredicted RBP9.31□□□□□ -0.92
UBE2D3-224ENST00000508474 DDX11L8A8MPP1 907 aa9.3□□□□□ -0.92
UBE2D3-224ENST00000508474 PDE3BQ13370 1112 aa9.3□□□□□ -0.92
UBE2D3-224ENST00000508474 VPS8Q8N3P4 1428 aa9.29□□□□□ -0.92
UBE2D3-224ENST00000508474 GZF1Q9H116 711 aaPredicted RBP9.29□□□□□ -0.92
UBE2D3-224ENST00000508474 SLKQ9H2G2 1235 aaPredicted RBP9.29□□□□□ -0.92
UBE2D3-224ENST00000508474 ABCC9O60706 1549 aa9.29□□□□□ -0.92
UBE2D3-224ENST00000508474 FRAT1Q92837 279 aaPredicted RBP9.28□□□□□ -0.92
UBE2D3-224ENST00000508474 WRNQ14191 1432 aaPredicted RBP eCLIP9.28□□□□□ -0.92
UBE2D3-224ENST00000508474 HSPA5P11021 654 aaKnown RBP9.28□□□□□ -0.92
UBE2D3-224ENST00000508474 PDE4AP27815 886 aa9.28□□□□□ -0.92
UBE2D3-224ENST00000508474 AMER1Q5JTC6 1135 aaPredicted RBP9.28□□□□□ -0.92
UBE2D3-224ENST00000508474 SKOR2Q2VWA4 1001 aaPredicted RBP9.27□□□□□ -0.93
UBE2D3-224ENST00000508474 RALBP1Q15311 655 aa9.27□□□□□ -0.93
UBE2D3-224ENST00000508474 MCCP23508 829 aa9.27□□□□□ -0.93
UBE2D3-224ENST00000508474 MAP7D2Q96T17 732 aa9.27□□□□□ -0.93
UBE2D3-224ENST00000508474 GOLGA6L4A6NEF3 574 aa9.26□□□□□ -0.93
UBE2D3-224ENST00000508474 DRC7Q8IY82 874 aa9.26□□□□□ -0.93
UBE2D3-224ENST00000508474 SPRYD3Q8NCJ5 442 aa9.26□□□□□ -0.93
UBE2D3-224ENST00000508474 PMFBP1Q8TBY8 1022 aa9.26□□□□□ -0.93
UBE2D3-224ENST00000508474 RWDD1Q9H446 243 aaPredicted RBP9.26□□□□□ -0.93
UBE2D3-224ENST00000508474 MTERF4Q7Z6M4 381 aaKnown RBP9.25□□□□□ -0.93
UBE2D3-224ENST00000508474 SENP3-EIF4A1A0A087X0R7 540 aa9.25□□□□□ -0.93
UBE2D3-224ENST00000508474 CALD1Q05682 793 aaKnown RBP9.25□□□□□ -0.93
UBE2D3-224ENST00000508474 FAM161AQ3B820 660 aa9.25□□□□□ -0.93
UBE2D3-224ENST00000508474 PPP1R15AO75807 674 aaPredicted RBP9.24□□□□□ -0.93
UBE2D3-224ENST00000508474 ANO8Q9HCE9 1232 aaPredicted RBP9.24□□□□□ -0.93
UBE2D3-224ENST00000508474 KTN1Q86UP2 1357 aaKnown RBP9.24□□□□□ -0.93
UBE2D3-224ENST00000508474 CHGAP10645 457 aaKnown RBP9.24□□□□□ -0.93
UBE2D3-224ENST00000508474 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.24□□□□□ -0.93
UBE2D3-224ENST00000508474 ZBED9Q6R2W3 1325 aa9.24□□□□□ -0.93
UBE2D3-224ENST00000508474 MAPK8IP3Q9UPT6 1336 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms