RNA–Protein interactions for RNA: ENST00000497470.1

SCAMP3-209, Transcript of secretory carrier membrane protein 3, humanhuman

TSL 5

Gene SCAMP3, Length 845 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP3-209ENST00000497470 TNIKQ9UKE5 1360 aa32.11■■■□□ 2.73
SCAMP3-209ENST00000497470 CTTNBP2Q8WZ74 1663 aa32.08■■■□□ 2.73
SCAMP3-209ENST00000497470 UBTFP17480 764 aaKnown RBP32.06■■■□□ 2.72
SCAMP3-209ENST00000497470 IQGAP2Q13576 1575 aa32.05■■■□□ 2.72
SCAMP3-209ENST00000497470 SHROOM2Q13796 1616 aa31.99■■■□□ 2.71
SCAMP3-209ENST00000497470 UGGT2Q9NYU1 1516 aa31.99■■■□□ 2.71
SCAMP3-209ENST00000497470 JPH4Q96JJ6 628 aa31.98■■■□□ 2.71
SCAMP3-209ENST00000497470 LOC105371045A0A1W2PR82 267 aa31.93■■■□□ 2.7
SCAMP3-209ENST00000497470 EFCAB5A4FU69 1503 aa31.85■■■□□ 2.69
SCAMP3-209ENST00000497470 CARMIL2Q6F5E8 1435 aa31.84■■■□□ 2.69
SCAMP3-209ENST00000497470 PRG4Q92954 1404 aaPredicted RBP31.8■■■□□ 2.68
SCAMP3-209ENST00000497470 EHMT2Q96KQ7 1210 aa31.79■■■□□ 2.68
SCAMP3-209ENST00000497470 SAMD9Q5K651 1589 aa31.78■■■□□ 2.68
SCAMP3-209ENST00000497470 DISP1Q96F81 1524 aa31.78■■■□□ 2.68
SCAMP3-209ENST00000497470 CEP162Q5TB80 1403 aa31.73■■■□□ 2.67
SCAMP3-209ENST00000497470 CLIP1P30622 1438 aa31.72■■■□□ 2.67
SCAMP3-209ENST00000497470 KIAA0556O60303 1618 aa31.71■■■□□ 2.67
SCAMP3-209ENST00000497470 ARHGAP35Q9NRY4 1499 aa31.69■■■□□ 2.66
SCAMP3-209ENST00000497470 ARHGEF11O15085 1522 aa31.65■■■□□ 2.66
SCAMP3-209ENST00000497470 DNAJC5Q9H3Z4 198 aa31.65■■■□□ 2.66
SCAMP3-209ENST00000497470 ERCC6L2Q5T890 1561 aa31.58■■■□□ 2.65
SCAMP3-209ENST00000497470 PTPRGP23470 1445 aa31.56■■■□□ 2.64
SCAMP3-209ENST00000497470 FMN1Q68DA7 1419 aa31.54■■■□□ 2.64
SCAMP3-209ENST00000497470 RIMBP3CA6NJZ7 1639 aa31.53■■■□□ 2.64
SCAMP3-209ENST00000497470 RIMBP3BA6NNM3 1639 aa31.53■■■□□ 2.64
SCAMP3-209ENST00000497470 RIMBP3Q9UFD9 1639 aa31.53■■■□□ 2.64
SCAMP3-209ENST00000497470 ARAP1Q96P48 1450 aa31.51■■■□□ 2.63
SCAMP3-209ENST00000497470 FHOD3Q2V2M9 1422 aa31.49■■■□□ 2.63
SCAMP3-209ENST00000497470 RANGAP1P46060 587 aaPredicted RBP31.48■■■□□ 2.63
SCAMP3-209ENST00000497470 P3H3Q8IVL6 736 aa31.44■■■□□ 2.62
SCAMP3-209ENST00000497470 UHRF1BP1LA0JNW5 1464 aa31.41■■■□□ 2.62
SCAMP3-209ENST00000497470 UACAQ9BZF9 1416 aa31.39■■■□□ 2.62
SCAMP3-209ENST00000497470 ABCA8O94911 1581 aa31.38■■■□□ 2.61
SCAMP3-209ENST00000497470 VPS8Q8N3P4 1428 aa31.37■■■□□ 2.61
SCAMP3-209ENST00000497470 CASKIN1Q8WXD9 1431 aa31.34■■■□□ 2.61
SCAMP3-209ENST00000497470 ABCC2Q92887 1545 aa31.31■■■□□ 2.6
SCAMP3-209ENST00000497470 FYCO1Q9BQS8 1478 aa31.3■■■□□ 2.6
SCAMP3-209ENST00000497470 RAPGEF6Q8TEU7 1601 aa31.3■■■□□ 2.6
SCAMP3-209ENST00000497470 PLB1Q6P1J6 1458 aa31.28■■■□□ 2.6
SCAMP3-209ENST00000497470 CYB5RLQ6IPT4 315 aa31.25■■■□□ 2.59
SCAMP3-209ENST00000497470 HECW1Q76N89 1606 aa31.23■■■□□ 2.59
SCAMP3-209ENST00000497470 KDM5BQ9UGL1 1544 aa31.21■■■□□ 2.59
SCAMP3-209ENST00000497470 NUP153P49790 1475 aaKnown RBP31.2■■■□□ 2.58
SCAMP3-209ENST00000497470 PCF11O94913 1555 aaKnown RBP31.18■■■□□ 2.58
SCAMP3-209ENST00000497470 ADCY10Q96PN6 1610 aa31.18■■■□□ 2.58
SCAMP3-209ENST00000497470 CCDC18Q5T9S5 1454 aa31.17■■■□□ 2.58
SCAMP3-209ENST00000497470 MAP3K1Q13233 1512 aa31.16■■■□□ 2.58
SCAMP3-209ENST00000497470 TTBK1Q5TCY1 1321 aaPredicted RBP31.16■■■□□ 2.58
SCAMP3-209ENST00000497470 EPRSP07814 1512 aaKnown RBP31.12■■■□□ 2.57
SCAMP3-209ENST00000497470 ATP10BO94823 1461 aa31.11■■■□□ 2.57
SCAMP3-209ENST00000497470 NPM1P06748 294 aaKnown RBP eCLIP31.09■■■□□ 2.57
SCAMP3-209ENST00000497470 CDK11AQ9UQ88 783 aaPredicted RBP31.04■■■□□ 2.56
SCAMP3-209ENST00000497470 MAPKBP1O60336 1514 aa31■■■□□ 2.55
SCAMP3-209ENST00000497470 ZCCHC11Q5TAX3 1644 aaKnown RBP31■■■□□ 2.55
SCAMP3-209ENST00000497470 APLP2Q06481 763 aa30.98■■■□□ 2.55
SCAMP3-209ENST00000497470 ATP1B4Q9UN42 357 aaPredicted RBP30.98■■■□□ 2.55
SCAMP3-209ENST00000497470 LRRIQ1Q96JM4 1722 aa30.96■■■□□ 2.55
SCAMP3-209ENST00000497470 TIAM1Q13009 1591 aa30.96■■■□□ 2.55
SCAMP3-209ENST00000497470 CFAP43Q8NDM7 1665 aa30.94■■■□□ 2.54
SCAMP3-209ENST00000497470 CDK13Q14004 1512 aaKnown RBP30.93■■■□□ 2.54
SCAMP3-209ENST00000497470 PLEKHD1A6NEE1 506 aa30.93■■■□□ 2.54
SCAMP3-209ENST00000497470 TROQ12816 1431 aaPredicted RBP30.88■■■□□ 2.53
SCAMP3-209ENST00000497470 ASXL2Q76L83 1435 aa30.88■■■□□ 2.53
SCAMP3-209ENST00000497470 WDR7Q9Y4E6 1490 aa30.88■■■□□ 2.53
SCAMP3-209ENST00000497470 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.87■■■□□ 2.53
SCAMP3-209ENST00000497470 HNRNPUL2Q1KMD3 747 aaKnown RBP30.87■■■□□ 2.53
SCAMP3-209ENST00000497470 LRRC9Q6ZRR7 1453 aa30.84■■■□□ 2.53
SCAMP3-209ENST00000497470 EHBP1L1Q8N3D4 1523 aa30.83■■■□□ 2.53
SCAMP3-209ENST00000497470 MTUS2Q5JR59 1369 aa30.81■■■□□ 2.52
SCAMP3-209ENST00000497470 ARID3CA6NKF2 412 aa30.79■■■□□ 2.52
SCAMP3-209ENST00000497470 MAGI3Q5TCQ9 1506 aa30.77■■■□□ 2.52
SCAMP3-209ENST00000497470 ABCC10Q5T3U5 1492 aa30.74■■■□□ 2.51
SCAMP3-209ENST00000497470 GLI2P10070 1586 aa30.73■■■□□ 2.51
SCAMP3-209ENST00000497470 KANK4Q5T7N3 995 aaPredicted RBP30.71■■■□□ 2.51
SCAMP3-209ENST00000497470 KIF14Q15058 1648 aa30.69■■■□□ 2.5
SCAMP3-209ENST00000497470 SUPT6HQ7KZ85 1726 aaKnown RBP30.66■■■□□ 2.5
SCAMP3-209ENST00000497470 ABCA9Q8IUA7 1624 aa30.65■■■□□ 2.5
SCAMP3-209ENST00000497470 DIP2BQ9P265 1576 aa30.63■■■□□ 2.49
SCAMP3-209ENST00000497470 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.61■■■□□ 2.49
SCAMP3-209ENST00000497470 NCOA2Q15596 1464 aa30.6■■■□□ 2.49
SCAMP3-209ENST00000497470 ARAP3Q8WWN8 1544 aa30.59■■■□□ 2.49
SCAMP3-209ENST00000497470 KCNH8Q96L42 1107 aa30.59■■■□□ 2.49
SCAMP3-209ENST00000497470 FAM69CQ0P6D2 419 aa30.53■■■□□ 2.48
SCAMP3-209ENST00000497470 PLCH2O75038 1416 aa30.52■■■□□ 2.48
SCAMP3-209ENST00000497470 CCNB3Q8WWL7 1395 aa30.52■■■□□ 2.48
SCAMP3-209ENST00000497470 MAP3K4Q9Y6R4 1608 aa30.51■■■□□ 2.48
SCAMP3-209ENST00000497470 CD109Q6YHK3 1445 aa30.5■■■□□ 2.47
SCAMP3-209ENST00000497470 GPATCH8Q9UKJ3 1502 aaKnown RBP30.5■■■□□ 2.47
SCAMP3-209ENST00000497470 MIA2Q96PC5 1412 aa30.49■■■□□ 2.47
SCAMP3-209ENST00000497470 TTC37Q6PGP7 1564 aa30.49■■■□□ 2.47
SCAMP3-209ENST00000497470 KIF13AQ9H1H9 1805 aa30.48■■■□□ 2.47
SCAMP3-209ENST00000497470 MYOM3Q5VTT5 1437 aa30.47■■■□□ 2.47
SCAMP3-209ENST00000497470 ITSN2Q9NZM3 1697 aa30.46■■■□□ 2.47
SCAMP3-209ENST00000497470 PHLDB1Q86UU1 1377 aa30.46■■■□□ 2.47
SCAMP3-209ENST00000497470 MYO5CQ9NQX4 1742 aa30.44■■■□□ 2.46
SCAMP3-209ENST00000497470 PREX2Q70Z35 1606 aa30.44■■■□□ 2.46
SCAMP3-209ENST00000497470 CDC42BPAQ5VT25 1732 aa30.42■■■□□ 2.46
SCAMP3-209ENST00000497470 TEX14Q8IWB6 1497 aa30.4■■■□□ 2.46
SCAMP3-209ENST00000497470 EFCAB2Q5VUJ9 269 aa30.4■■■□□ 2.46
SCAMP3-209ENST00000497470 NEO1Q92859 1461 aa30.38■■■□□ 2.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms