RNA–Protein interactions for RNA: ENST00000496024.1

CALD1-223, Transcript of caldesmon 1, humanhuman

TSL 4

Gene CALD1, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALD1-223ENST00000496024 ARAP1Q96P48 1450 aa16.41■□□□□ 0.22
CALD1-223ENST00000496024 CSRNP3Q8WYN3 585 aa16.4■□□□□ 0.22
CALD1-223ENST00000496024 JPH4Q96JJ6 628 aa16.4■□□□□ 0.22
CALD1-223ENST00000496024 ERCC6L2Q5T890 1561 aa16.39■□□□□ 0.21
CALD1-223ENST00000496024 SHROOM2Q13796 1616 aa16.37■□□□□ 0.21
CALD1-223ENST00000496024 KIAA0586Q9BVV6 1533 aa16.37■□□□□ 0.21
CALD1-223ENST00000496024 PRG4Q92954 1404 aaPredicted RBP16.36■□□□□ 0.21
CALD1-223ENST00000496024 EEA1Q15075 1411 aa16.36■□□□□ 0.21
CALD1-223ENST00000496024 PRXQ9BXM0 1461 aa16.35■□□□□ 0.21
CALD1-223ENST00000496024 IQGAP2Q13576 1575 aa16.3■□□□□ 0.2
CALD1-223ENST00000496024 EHMT2Q96KQ7 1210 aa16.3■□□□□ 0.2
CALD1-223ENST00000496024 TTBK1Q5TCY1 1321 aaPredicted RBP16.28■□□□□ 0.2
CALD1-223ENST00000496024 CTTNBP2Q8WZ74 1663 aa16.27■□□□□ 0.19
CALD1-223ENST00000496024 CARMIL2Q6F5E8 1435 aa16.22■□□□□ 0.19
CALD1-223ENST00000496024 UGGT2Q9NYU1 1516 aa16.19■□□□□ 0.18
CALD1-223ENST00000496024 KIF21BO75037 1637 aa16.19■□□□□ 0.18
CALD1-223ENST00000496024 RANGAP1P46060 587 aaPredicted RBP16.19■□□□□ 0.18
CALD1-223ENST00000496024 DISP1Q96F81 1524 aa16.18■□□□□ 0.18
CALD1-223ENST00000496024 UBTFP17480 764 aaKnown RBP16.17■□□□□ 0.18
CALD1-223ENST00000496024 PTPRGP23470 1445 aa16.17■□□□□ 0.18
CALD1-223ENST00000496024 TNIKQ9UKE5 1360 aa16.16■□□□□ 0.18
CALD1-223ENST00000496024 KIAA0556O60303 1618 aa16.15■□□□□ 0.18
CALD1-223ENST00000496024 P3H3Q8IVL6 736 aa16.14■□□□□ 0.17
CALD1-223ENST00000496024 TRHP20396 242 aaPredicted RBP16.13■□□□□ 0.17
CALD1-223ENST00000496024 GOLGA3Q08378 1498 aa16.13■□□□□ 0.17
CALD1-223ENST00000496024 ADCY10Q96PN6 1610 aa16.09■□□□□ 0.17
CALD1-223ENST00000496024 NPM1P06748 294 aaKnown RBP eCLIP16.09■□□□□ 0.17
CALD1-223ENST00000496024 UACAQ9BZF9 1416 aa16.04■□□□□ 0.16
CALD1-223ENST00000496024 SAMD9Q5K651 1589 aa16.04■□□□□ 0.16
CALD1-223ENST00000496024 AEBP2Q6ZN18 517 aaPredicted RBP16.01■□□□□ 0.15
CALD1-223ENST00000496024 PLB1Q6P1J6 1458 aa16.01■□□□□ 0.15
CALD1-223ENST00000496024 FHOD3Q2V2M9 1422 aa16.01■□□□□ 0.15
CALD1-223ENST00000496024 ABCC2Q92887 1545 aa16■□□□□ 0.15
CALD1-223ENST00000496024 UHRF1BP1LA0JNW5 1464 aa15.99■□□□□ 0.15
CALD1-223ENST00000496024 ARID3CA6NKF2 412 aa15.97■□□□□ 0.15
CALD1-223ENST00000496024 EFCAB5A4FU69 1503 aa15.96■□□□□ 0.15
CALD1-223ENST00000496024 ABCA8O94911 1581 aa15.96■□□□□ 0.14
CALD1-223ENST00000496024 MAPKBP1O60336 1514 aa15.94■□□□□ 0.14
CALD1-223ENST00000496024 LOC105371045A0A1W2PR82 267 aa15.93■□□□□ 0.14
CALD1-223ENST00000496024 ZCCHC11Q5TAX3 1644 aaKnown RBP15.93■□□□□ 0.14
CALD1-223ENST00000496024 ARHGAP35Q9NRY4 1499 aa15.92■□□□□ 0.14
CALD1-223ENST00000496024 FAM69CQ0P6D2 419 aa15.92■□□□□ 0.14
CALD1-223ENST00000496024 KDM5BQ9UGL1 1544 aa15.92■□□□□ 0.14
CALD1-223ENST00000496024 ASXL2Q76L83 1435 aa15.92■□□□□ 0.14
CALD1-223ENST00000496024 KIF13AQ9H1H9 1805 aa15.91■□□□□ 0.14
CALD1-223ENST00000496024 RAPGEF6Q8TEU7 1601 aa15.9■□□□□ 0.14
CALD1-223ENST00000496024 ATP1B4Q9UN42 357 aaPredicted RBP15.89■□□□□ 0.13
CALD1-223ENST00000496024 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.88■□□□□ 0.13
CALD1-223ENST00000496024 HNRNPUL2Q1KMD3 747 aaKnown RBP15.88■□□□□ 0.13
CALD1-223ENST00000496024 ABCC10Q5T3U5 1492 aa15.88■□□□□ 0.13
CALD1-223ENST00000496024 DIP2BQ9P265 1576 aa15.87■□□□□ 0.13
CALD1-223ENST00000496024 CLIP1P30622 1438 aa15.86■□□□□ 0.13
CALD1-223ENST00000496024 ATP10BO94823 1461 aa15.85■□□□□ 0.13
CALD1-223ENST00000496024 KCNH8Q96L42 1107 aa15.84■□□□□ 0.13
CALD1-223ENST00000496024 FMN1Q68DA7 1419 aa15.84■□□□□ 0.13
CALD1-223ENST00000496024 NUP153P49790 1475 aaKnown RBP15.84■□□□□ 0.13
CALD1-223ENST00000496024 TSPOAP1O95153 1857 aa15.83■□□□□ 0.12
CALD1-223ENST00000496024 WDR7Q9Y4E6 1490 aa15.82■□□□□ 0.12
CALD1-223ENST00000496024 EPRSP07814 1512 aaKnown RBP15.8■□□□□ 0.12
CALD1-223ENST00000496024 CEP162Q5TB80 1403 aa15.8■□□□□ 0.12
CALD1-223ENST00000496024 CDK13Q14004 1512 aaKnown RBP15.78■□□□□ 0.12
CALD1-223ENST00000496024 HECW1Q76N89 1606 aa15.76■□□□□ 0.11
CALD1-223ENST00000496024 GLI2P10070 1586 aa15.75■□□□□ 0.11
CALD1-223ENST00000496024 PLEKHD1A6NEE1 506 aa15.75■□□□□ 0.11
CALD1-223ENST00000496024 PCF11O94913 1555 aaKnown RBP15.74■□□□□ 0.11
CALD1-223ENST00000496024 CASKIN1Q8WXD9 1431 aa15.72■□□□□ 0.11
CALD1-223ENST00000496024 MAP3K4Q9Y6R4 1608 aa15.71■□□□□ 0.11
CALD1-223ENST00000496024 LRRIQ1Q96JM4 1722 aa15.71■□□□□ 0.1
CALD1-223ENST00000496024 CD109Q6YHK3 1445 aa15.69■□□□□ 0.1
CALD1-223ENST00000496024 PPRC1Q5VV67 1664 aaKnown RBP15.69■□□□□ 0.1
CALD1-223ENST00000496024 CFAP43Q8NDM7 1665 aa15.68■□□□□ 0.1
CALD1-223ENST00000496024 CDK11AQ9UQ88 783 aaPredicted RBP15.68■□□□□ 0.1
CALD1-223ENST00000496024 FYCO1Q9BQS8 1478 aa15.67■□□□□ 0.1
CALD1-223ENST00000496024 ABCA9Q8IUA7 1624 aa15.64■□□□□ 0.09
CALD1-223ENST00000496024 CCDC18Q5T9S5 1454 aa15.64■□□□□ 0.09
CALD1-223ENST00000496024 TEX14Q8IWB6 1497 aa15.64■□□□□ 0.09
CALD1-223ENST00000496024 KDM6BO15054 1643 aa15.63■□□□□ 0.09
CALD1-223ENST00000496024 MAGI3Q5TCQ9 1506 aa15.61■□□□□ 0.09
CALD1-223ENST00000496024 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.61■□□□□ 0.09
CALD1-223ENST00000496024 TROQ12816 1431 aaPredicted RBP15.6■□□□□ 0.09
CALD1-223ENST00000496024 TTC37Q6PGP7 1564 aa15.6■□□□□ 0.09
CALD1-223ENST00000496024 KIF14Q15058 1648 aa15.59■□□□□ 0.09
CALD1-223ENST00000496024 VPS8Q8N3P4 1428 aa15.59■□□□□ 0.09
CALD1-223ENST00000496024 COL17A1Q9UMD9 1497 aaPredicted RBP15.57■□□□□ 0.08
CALD1-223ENST00000496024 MTUS2Q5JR59 1369 aa15.54■□□□□ 0.08
CALD1-223ENST00000496024 MYO5CQ9NQX4 1742 aa15.52■□□□□ 0.08
CALD1-223ENST00000496024 FANCAO15360 1455 aa15.52■□□□□ 0.07
CALD1-223ENST00000496024 NEO1Q92859 1461 aa15.51■□□□□ 0.07
CALD1-223ENST00000496024 PLCH2O75038 1416 aa15.51■□□□□ 0.07
CALD1-223ENST00000496024 AKNAQ7Z591 1439 aa15.49■□□□□ 0.07
CALD1-223ENST00000496024 TIAM1Q13009 1591 aa15.49■□□□□ 0.07
CALD1-223ENST00000496024 PHLDB1Q86UU1 1377 aa15.49■□□□□ 0.07
CALD1-223ENST00000496024 RAPGEF3O95398 923 aa15.48■□□□□ 0.07
CALD1-223ENST00000496024 EFCAB2Q5VUJ9 269 aa15.48■□□□□ 0.07
CALD1-223ENST00000496024 ARHGAP5Q13017 1502 aa15.48■□□□□ 0.07
CALD1-223ENST00000496024 ARAP3Q8WWN8 1544 aa15.48■□□□□ 0.07
CALD1-223ENST00000496024 APLP2Q06481 763 aa15.47■□□□□ 0.07
CALD1-223ENST00000496024 CFAP74Q9C0B2 1584 aa15.47■□□□□ 0.07
CALD1-223ENST00000496024 EHBP1L1Q8N3D4 1523 aa15.46■□□□□ 0.07
CALD1-223ENST00000496024 CDC42BPBQ9Y5S2 1711 aa15.46■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms