RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 CEP170Q5SW79 1584 aa28.24■■■□□ 2.11
HDAC6-235ENST00000495515 CLASP1Q7Z460 1538 aa28.24■■■□□ 2.11
HDAC6-235ENST00000495515 KIAA0586Q9BVV6 1533 aa28.16■■■□□ 2.1
HDAC6-235ENST00000495515 JPH4Q96JJ6 628 aa28.09■■■□□ 2.09
HDAC6-235ENST00000495515 KIF21BO75037 1637 aa28.08■■■□□ 2.09
HDAC6-235ENST00000495515 IQGAP2Q13576 1575 aa28.01■■■□□ 2.07
HDAC6-235ENST00000495515 SHROOM2Q13796 1616 aa28■■■□□ 2.07
HDAC6-235ENST00000495515 GOLGA3Q08378 1498 aa28■■■□□ 2.07
HDAC6-235ENST00000495515 ARAP1Q96P48 1450 aa28■■■□□ 2.07
HDAC6-235ENST00000495515 PRG4Q92954 1404 aaPredicted RBP27.98■■■□□ 2.07
HDAC6-235ENST00000495515 UBTFP17480 764 aaKnown RBP27.95■■■□□ 2.06
HDAC6-235ENST00000495515 CTTNBP2Q8WZ74 1663 aa27.94■■■□□ 2.06
HDAC6-235ENST00000495515 CYB5RLQ6IPT4 315 aa27.93■■■□□ 2.06
HDAC6-235ENST00000495515 EHMT2Q96KQ7 1210 aa27.93■■■□□ 2.06
HDAC6-235ENST00000495515 CARMIL2Q6F5E8 1435 aa27.9■■■□□ 2.06
HDAC6-235ENST00000495515 UGGT2Q9NYU1 1516 aa27.87■■■□□ 2.05
HDAC6-235ENST00000495515 ERCC6L2Q5T890 1561 aa27.84■■■□□ 2.05
HDAC6-235ENST00000495515 DISP1Q96F81 1524 aa27.77■■■□□ 2.04
HDAC6-235ENST00000495515 TNIKQ9UKE5 1360 aa27.76■■■□□ 2.03
HDAC6-235ENST00000495515 RANGAP1P46060 587 aaPredicted RBP27.73■■■□□ 2.03
HDAC6-235ENST00000495515 KIAA0556O60303 1618 aa27.72■■■□□ 2.03
HDAC6-235ENST00000495515 PTPRGP23470 1445 aa27.72■■■□□ 2.03
HDAC6-235ENST00000495515 TTBK1Q5TCY1 1321 aaPredicted RBP27.67■■■□□ 2.02
HDAC6-235ENST00000495515 EFCAB5A4FU69 1503 aa27.64■■■□□ 2.02
HDAC6-235ENST00000495515 P3H3Q8IVL6 736 aa27.64■■■□□ 2.02
HDAC6-235ENST00000495515 SAMD9Q5K651 1589 aa27.63■■■□□ 2.01
HDAC6-235ENST00000495515 LOC105371045A0A1W2PR82 267 aa27.62■■■□□ 2.01
HDAC6-235ENST00000495515 TRHP20396 242 aaPredicted RBP27.57■■■□□ 2
HDAC6-235ENST00000495515 UACAQ9BZF9 1416 aa27.53■■■□□ 2
HDAC6-235ENST00000495515 FHOD3Q2V2M9 1422 aa27.52■■■□□ 2
HDAC6-235ENST00000495515 ARHGAP35Q9NRY4 1499 aa27.51■■■□□ 2
HDAC6-235ENST00000495515 CLIP1P30622 1438 aa27.51■■□□□ 1.99
HDAC6-235ENST00000495515 NPM1P06748 294 aaKnown RBP eCLIP27.5■■□□□ 1.99
HDAC6-235ENST00000495515 UHRF1BP1LA0JNW5 1464 aa27.47■■□□□ 1.99
HDAC6-235ENST00000495515 CEP162Q5TB80 1403 aa27.44■■□□□ 1.98
HDAC6-235ENST00000495515 ABCC2Q92887 1545 aa27.44■■□□□ 1.98
HDAC6-235ENST00000495515 PLB1Q6P1J6 1458 aa27.43■■□□□ 1.98
HDAC6-235ENST00000495515 FMN1Q68DA7 1419 aa27.42■■□□□ 1.98
HDAC6-235ENST00000495515 ADCY10Q96PN6 1610 aa27.42■■□□□ 1.98
HDAC6-235ENST00000495515 ABCA8O94911 1581 aa27.4■■□□□ 1.98
HDAC6-235ENST00000495515 RAPGEF6Q8TEU7 1601 aa27.32■■□□□ 1.96
HDAC6-235ENST00000495515 KDM5BQ9UGL1 1544 aa27.31■■□□□ 1.96
HDAC6-235ENST00000495515 ATP1B4Q9UN42 357 aaPredicted RBP27.25■■□□□ 1.95
HDAC6-235ENST00000495515 MAPKBP1O60336 1514 aa27.25■■□□□ 1.95
HDAC6-235ENST00000495515 NUP153P49790 1475 aaKnown RBP27.23■■□□□ 1.95
HDAC6-235ENST00000495515 ARID3CA6NKF2 412 aa27.22■■□□□ 1.95
HDAC6-235ENST00000495515 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.22■■□□□ 1.95
HDAC6-235ENST00000495515 HNRNPUL2Q1KMD3 747 aaKnown RBP27.22■■□□□ 1.95
HDAC6-235ENST00000495515 CASKIN1Q8WXD9 1431 aa27.21■■□□□ 1.95
HDAC6-235ENST00000495515 ATP10BO94823 1461 aa27.2■■□□□ 1.95
HDAC6-235ENST00000495515 ZCCHC11Q5TAX3 1644 aaKnown RBP27.2■■□□□ 1.95
HDAC6-235ENST00000495515 HECW1Q76N89 1606 aa27.19■■□□□ 1.94
HDAC6-235ENST00000495515 KIF13AQ9H1H9 1805 aa27.19■■□□□ 1.94
HDAC6-235ENST00000495515 ASXL2Q76L83 1435 aa27.18■■□□□ 1.94
HDAC6-235ENST00000495515 FYCO1Q9BQS8 1478 aa27.15■■□□□ 1.94
HDAC6-235ENST00000495515 PCF11O94913 1555 aaKnown RBP27.13■■□□□ 1.93
HDAC6-235ENST00000495515 EPRSP07814 1512 aaKnown RBP27.11■■□□□ 1.93
HDAC6-235ENST00000495515 VPS8Q8N3P4 1428 aa27.11■■□□□ 1.93
HDAC6-235ENST00000495515 WDR7Q9Y4E6 1490 aa27.11■■□□□ 1.93
HDAC6-235ENST00000495515 PLEKHD1A6NEE1 506 aa27.1■■□□□ 1.93
HDAC6-235ENST00000495515 CDK11AQ9UQ88 783 aaPredicted RBP27.1■■□□□ 1.93
HDAC6-235ENST00000495515 ABCC10Q5T3U5 1492 aa27.09■■□□□ 1.93
HDAC6-235ENST00000495515 CCDC18Q5T9S5 1454 aa27.08■■□□□ 1.93
HDAC6-235ENST00000495515 FAM69CQ0P6D2 419 aa27.07■■□□□ 1.92
HDAC6-235ENST00000495515 CDK13Q14004 1512 aaKnown RBP27.06■■□□□ 1.92
HDAC6-235ENST00000495515 KCNH8Q96L42 1107 aa27.03■■□□□ 1.92
HDAC6-235ENST00000495515 DIP2BQ9P265 1576 aa27.01■■□□□ 1.91
HDAC6-235ENST00000495515 GLI2P10070 1586 aa26.97■■□□□ 1.91
HDAC6-235ENST00000495515 APLP2Q06481 763 aa26.92■■□□□ 1.9
HDAC6-235ENST00000495515 TROQ12816 1431 aaPredicted RBP26.91■■□□□ 1.9
HDAC6-235ENST00000495515 LRRIQ1Q96JM4 1722 aa26.91■■□□□ 1.9
HDAC6-235ENST00000495515 MTUS2Q5JR59 1369 aa26.86■■□□□ 1.89
HDAC6-235ENST00000495515 TSPOAP1O95153 1857 aa26.85■■□□□ 1.89
HDAC6-235ENST00000495515 CD109Q6YHK3 1445 aa26.84■■□□□ 1.89
HDAC6-235ENST00000495515 MAP3K1Q13233 1512 aa26.84■■□□□ 1.89
HDAC6-235ENST00000495515 TIAM1Q13009 1591 aa26.81■■□□□ 1.88
HDAC6-235ENST00000495515 KIF14Q15058 1648 aa26.8■■□□□ 1.88
HDAC6-235ENST00000495515 ABCA9Q8IUA7 1624 aa26.8■■□□□ 1.88
HDAC6-235ENST00000495515 MAP3K4Q9Y6R4 1608 aa26.8■■□□□ 1.88
HDAC6-235ENST00000495515 CFAP43Q8NDM7 1665 aa26.8■■□□□ 1.88
HDAC6-235ENST00000495515 MAGI3Q5TCQ9 1506 aa26.79■■□□□ 1.88
HDAC6-235ENST00000495515 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.77■■□□□ 1.88
HDAC6-235ENST00000495515 TEX14Q8IWB6 1497 aa26.77■■□□□ 1.88
HDAC6-235ENST00000495515 EHBP1L1Q8N3D4 1523 aa26.76■■□□□ 1.87
HDAC6-235ENST00000495515 LRRC9Q6ZRR7 1453 aa26.72■■□□□ 1.87
HDAC6-235ENST00000495515 KDM6BO15054 1643 aa26.72■■□□□ 1.87
HDAC6-235ENST00000495515 TTC37Q6PGP7 1564 aa26.7■■□□□ 1.86
HDAC6-235ENST00000495515 PLCH2O75038 1416 aa26.67■■□□□ 1.86
HDAC6-235ENST00000495515 KANK4Q5T7N3 995 aaPredicted RBP26.67■■□□□ 1.86
HDAC6-235ENST00000495515 PHLDB1Q86UU1 1377 aa26.66■■□□□ 1.86
HDAC6-235ENST00000495515 PPRC1Q5VV67 1664 aaKnown RBP26.66■■□□□ 1.86
HDAC6-235ENST00000495515 CCNB3Q8WWL7 1395 aa26.64■■□□□ 1.86
HDAC6-235ENST00000495515 EFCAB2Q5VUJ9 269 aa26.63■■□□□ 1.85
HDAC6-235ENST00000495515 NEO1Q92859 1461 aa26.62■■□□□ 1.85
HDAC6-235ENST00000495515 ARAP3Q8WWN8 1544 aa26.62■■□□□ 1.85
HDAC6-235ENST00000495515 AEBP2Q6ZN18 517 aaPredicted RBP26.61■■□□□ 1.85
HDAC6-235ENST00000495515 SUPT6HQ7KZ85 1726 aaKnown RBP26.61■■□□□ 1.85
HDAC6-235ENST00000495515 FANCAO15360 1455 aa26.61■■□□□ 1.85
HDAC6-235ENST00000495515 NCOA2Q15596 1464 aa26.61■■□□□ 1.85
HDAC6-235ENST00000495515 MYO5CQ9NQX4 1742 aa26.59■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms