RNA–Protein interactions for RNA: ENST00000495497.1

HDAC4-212, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 849 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-212ENST00000495497 RIMBP3BA6NNM3 1639 aa32.34■■■□□ 2.77
HDAC4-212ENST00000495497 RIMBP3Q9UFD9 1639 aa32.34■■■□□ 2.77
HDAC4-212ENST00000495497 KIAA0586Q9BVV6 1533 aa32.27■■■□□ 2.76
HDAC4-212ENST00000495497 JPH4Q96JJ6 628 aa32.26■■■□□ 2.75
HDAC4-212ENST00000495497 SHROOM2Q13796 1616 aa32.21■■■□□ 2.75
HDAC4-212ENST00000495497 ERCC6L2Q5T890 1561 aa32.19■■■□□ 2.74
HDAC4-212ENST00000495497 PRG4Q92954 1404 aaPredicted RBP32.17■■■□□ 2.74
HDAC4-212ENST00000495497 ARAP1Q96P48 1450 aa32.16■■■□□ 2.74
HDAC4-212ENST00000495497 CYB5RLQ6IPT4 315 aa32.15■■■□□ 2.74
HDAC4-212ENST00000495497 EHMT2Q96KQ7 1210 aa32.14■■■□□ 2.74
HDAC4-212ENST00000495497 IQGAP2Q13576 1575 aa32.11■■■□□ 2.73
HDAC4-212ENST00000495497 KIF21BO75037 1637 aa32.06■■■□□ 2.72
HDAC4-212ENST00000495497 CTTNBP2Q8WZ74 1663 aa32.01■■■□□ 2.71
HDAC4-212ENST00000495497 UGGT2Q9NYU1 1516 aa31.95■■■□□ 2.7
HDAC4-212ENST00000495497 GOLGA3Q08378 1498 aa31.93■■■□□ 2.7
HDAC4-212ENST00000495497 UBTFP17480 764 aaKnown RBP31.92■■■□□ 2.7
HDAC4-212ENST00000495497 CARMIL2Q6F5E8 1435 aa31.92■■■□□ 2.7
HDAC4-212ENST00000495497 DISP1Q96F81 1524 aa31.91■■■□□ 2.7
HDAC4-212ENST00000495497 TTBK1Q5TCY1 1321 aaPredicted RBP31.91■■■□□ 2.7
HDAC4-212ENST00000495497 RANGAP1P46060 587 aaPredicted RBP31.88■■■□□ 2.69
HDAC4-212ENST00000495497 TNIKQ9UKE5 1360 aa31.82■■■□□ 2.69
HDAC4-212ENST00000495497 KIAA0556O60303 1618 aa31.82■■■□□ 2.68
HDAC4-212ENST00000495497 PTPRGP23470 1445 aa31.81■■■□□ 2.68
HDAC4-212ENST00000495497 P3H3Q8IVL6 736 aa31.79■■■□□ 2.68
HDAC4-212ENST00000495497 SAMD9Q5K651 1589 aa31.67■■■□□ 2.66
HDAC4-212ENST00000495497 LOC105371045A0A1W2PR82 267 aa31.62■■■□□ 2.65
HDAC4-212ENST00000495497 ADCY10Q96PN6 1610 aa31.6■■■□□ 2.65
HDAC4-212ENST00000495497 FHOD3Q2V2M9 1422 aa31.59■■■□□ 2.65
HDAC4-212ENST00000495497 UACAQ9BZF9 1416 aa31.58■■■□□ 2.65
HDAC4-212ENST00000495497 PLB1Q6P1J6 1458 aa31.54■■■□□ 2.64
HDAC4-212ENST00000495497 EFCAB5A4FU69 1503 aa31.54■■■□□ 2.64
HDAC4-212ENST00000495497 NPM1P06748 294 aaKnown RBP eCLIP31.52■■■□□ 2.64
HDAC4-212ENST00000495497 ARHGAP35Q9NRY4 1499 aa31.52■■■□□ 2.64
HDAC4-212ENST00000495497 UHRF1BP1LA0JNW5 1464 aa31.5■■■□□ 2.63
HDAC4-212ENST00000495497 ABCC2Q92887 1545 aa31.49■■■□□ 2.63
HDAC4-212ENST00000495497 ABCA8O94911 1581 aa31.45■■■□□ 2.63
HDAC4-212ENST00000495497 TRHP20396 242 aaPredicted RBP31.43■■■□□ 2.62
HDAC4-212ENST00000495497 CLIP1P30622 1438 aa31.4■■■□□ 2.62
HDAC4-212ENST00000495497 ARID3CA6NKF2 412 aa31.38■■■□□ 2.61
HDAC4-212ENST00000495497 KDM5BQ9UGL1 1544 aa31.36■■■□□ 2.61
HDAC4-212ENST00000495497 RAPGEF6Q8TEU7 1601 aa31.32■■■□□ 2.6
HDAC4-212ENST00000495497 CEP162Q5TB80 1403 aa31.32■■■□□ 2.6
HDAC4-212ENST00000495497 MAPKBP1O60336 1514 aa31.31■■■□□ 2.6
HDAC4-212ENST00000495497 ZCCHC11Q5TAX3 1644 aaKnown RBP31.3■■■□□ 2.6
HDAC4-212ENST00000495497 FMN1Q68DA7 1419 aa31.28■■■□□ 2.6
HDAC4-212ENST00000495497 ASXL2Q76L83 1435 aa31.27■■■□□ 2.6
HDAC4-212ENST00000495497 NUP153P49790 1475 aaKnown RBP31.26■■■□□ 2.59
HDAC4-212ENST00000495497 ATP10BO94823 1461 aa31.25■■■□□ 2.59
HDAC4-212ENST00000495497 ATP1B4Q9UN42 357 aaPredicted RBP31.24■■■□□ 2.59
HDAC4-212ENST00000495497 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.2■■■□□ 2.59
HDAC4-212ENST00000495497 FAM69CQ0P6D2 419 aa31.2■■■□□ 2.59
HDAC4-212ENST00000495497 HNRNPUL2Q1KMD3 747 aaKnown RBP31.2■■■□□ 2.59
HDAC4-212ENST00000495497 ABCC10Q5T3U5 1492 aa31.19■■■□□ 2.58
HDAC4-212ENST00000495497 DIP2BQ9P265 1576 aa31.13■■■□□ 2.57
HDAC4-212ENST00000495497 WDR7Q9Y4E6 1490 aa31.11■■■□□ 2.57
HDAC4-212ENST00000495497 KCNH8Q96L42 1107 aa31.1■■■□□ 2.57
HDAC4-212ENST00000495497 KIF13AQ9H1H9 1805 aa31.1■■■□□ 2.57
HDAC4-212ENST00000495497 HECW1Q76N89 1606 aa31.09■■■□□ 2.57
HDAC4-212ENST00000495497 CDK13Q14004 1512 aaKnown RBP31.09■■■□□ 2.57
HDAC4-212ENST00000495497 PCF11O94913 1555 aaKnown RBP31.09■■■□□ 2.57
HDAC4-212ENST00000495497 CASKIN1Q8WXD9 1431 aa31.08■■■□□ 2.57
HDAC4-212ENST00000495497 EPRSP07814 1512 aaKnown RBP31.07■■■□□ 2.56
HDAC4-212ENST00000495497 PLEKHD1A6NEE1 506 aa31.01■■■□□ 2.55
HDAC4-212ENST00000495497 FYCO1Q9BQS8 1478 aa30.99■■■□□ 2.55
HDAC4-212ENST00000495497 GLI2P10070 1586 aa30.97■■■□□ 2.55
HDAC4-212ENST00000495497 LRRIQ1Q96JM4 1722 aa30.96■■■□□ 2.55
HDAC4-212ENST00000495497 VPS8Q8N3P4 1428 aa30.9■■■□□ 2.54
HDAC4-212ENST00000495497 CCDC18Q5T9S5 1454 aa30.89■■■□□ 2.54
HDAC4-212ENST00000495497 CDK11AQ9UQ88 783 aaPredicted RBP30.89■■■□□ 2.54
HDAC4-212ENST00000495497 TSPOAP1O95153 1857 aa30.87■■■□□ 2.53
HDAC4-212ENST00000495497 MAP3K4Q9Y6R4 1608 aa30.84■■■□□ 2.53
HDAC4-212ENST00000495497 CD109Q6YHK3 1445 aa30.83■■■□□ 2.53
HDAC4-212ENST00000495497 TROQ12816 1431 aaPredicted RBP30.8■■■□□ 2.52
HDAC4-212ENST00000495497 MAGI3Q5TCQ9 1506 aa30.79■■■□□ 2.52
HDAC4-212ENST00000495497 PPRC1Q5VV67 1664 aaKnown RBP30.78■■■□□ 2.52
HDAC4-212ENST00000495497 CFAP43Q8NDM7 1665 aa30.78■■■□□ 2.52
HDAC4-212ENST00000495497 ABCA9Q8IUA7 1624 aa30.77■■■□□ 2.52
HDAC4-212ENST00000495497 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.75■■■□□ 2.51
HDAC4-212ENST00000495497 KIF14Q15058 1648 aa30.72■■■□□ 2.51
HDAC4-212ENST00000495497 TTC37Q6PGP7 1564 aa30.71■■■□□ 2.51
HDAC4-212ENST00000495497 TEX14Q8IWB6 1497 aa30.68■■■□□ 2.5
HDAC4-212ENST00000495497 MTUS2Q5JR59 1369 aa30.66■■■□□ 2.5
HDAC4-212ENST00000495497 TIAM1Q13009 1591 aa30.63■■■□□ 2.49
HDAC4-212ENST00000495497 KANK4Q5T7N3 995 aaPredicted RBP30.59■■■□□ 2.49
HDAC4-212ENST00000495497 COL17A1Q9UMD9 1497 aaPredicted RBP30.57■■■□□ 2.48
HDAC4-212ENST00000495497 PLCH2O75038 1416 aa30.57■■■□□ 2.48
HDAC4-212ENST00000495497 EHBP1L1Q8N3D4 1523 aa30.57■■■□□ 2.48
HDAC4-212ENST00000495497 KDM6BO15054 1643 aa30.56■■■□□ 2.48
HDAC4-212ENST00000495497 APLP2Q06481 763 aa30.56■■■□□ 2.48
HDAC4-212ENST00000495497 MAP3K1Q13233 1512 aa30.53■■■□□ 2.48
HDAC4-212ENST00000495497 LRRC9Q6ZRR7 1453 aa30.53■■■□□ 2.48
HDAC4-212ENST00000495497 FANCAO15360 1455 aa30.52■■■□□ 2.48
HDAC4-212ENST00000495497 NEO1Q92859 1461 aa30.5■■■□□ 2.47
HDAC4-212ENST00000495497 MYO5CQ9NQX4 1742 aa30.49■■■□□ 2.47
HDAC4-212ENST00000495497 AKNAQ7Z591 1439 aa30.48■■■□□ 2.47
HDAC4-212ENST00000495497 EFCAB2Q5VUJ9 269 aa30.48■■■□□ 2.47
HDAC4-212ENST00000495497 PHLDB1Q86UU1 1377 aa30.46■■■□□ 2.47
HDAC4-212ENST00000495497 CCNB3Q8WWL7 1395 aa30.46■■■□□ 2.47
HDAC4-212ENST00000495497 ARHGAP5Q13017 1502 aa30.46■■■□□ 2.47
HDAC4-212ENST00000495497 GPATCH8Q9UKJ3 1502 aaKnown RBP30.45■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms