RNA–Protein interactions for RNA: ENST00000493732.5

NPHP3-209, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,933 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-209ENST00000493732 URB2Q14146 1524 aaKnown RBP14.26□□□□□ -0.13
NPHP3-209ENST00000493732 AQRO60306 1485 aaKnown RBP eCLIP14.26□□□□□ -0.13
NPHP3-209ENST00000493732 LRRC9Q6ZRR7 1453 aa14.24□□□□□ -0.13
NPHP3-209ENST00000493732 CTTNBP2Q8WZ74 1663 aa14.24□□□□□ -0.13
NPHP3-209ENST00000493732 FYCO1Q9BQS8 1478 aa14.23□□□□□ -0.13
NPHP3-209ENST00000493732 ABCA5Q8WWZ7 1642 aa14.22□□□□□ -0.13
NPHP3-209ENST00000493732 CFAP43Q8NDM7 1665 aa14.22□□□□□ -0.13
NPHP3-209ENST00000493732 DHX57Q6P158 1386 aaKnown RBP14.22□□□□□ -0.13
NPHP3-209ENST00000493732 FMN1Q68DA7 1419 aa14.22□□□□□ -0.13
NPHP3-209ENST00000493732 CASKIN1Q8WXD9 1431 aa14.21□□□□□ -0.13
NPHP3-209ENST00000493732 GAPVD1Q14C86 1478 aa14.2□□□□□ -0.14
NPHP3-209ENST00000493732 PCF11O94913 1555 aaKnown RBP14.18□□□□□ -0.14
NPHP3-209ENST00000493732 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.17□□□□□ -0.14
NPHP3-209ENST00000493732 CENPBP07199 599 aaPredicted RBP14.17□□□□□ -0.14
NPHP3-209ENST00000493732 FHOD3Q2V2M9 1422 aa14.15□□□□□ -0.14
NPHP3-209ENST00000493732 TDRD9Q8NDG6 1382 aaKnown RBP14.14□□□□□ -0.15
NPHP3-209ENST00000493732 KIF21AQ7Z4S6 1674 aa14.14□□□□□ -0.15
NPHP3-209ENST00000493732 TARBP1Q13395 1621 aaKnown RBP14.12□□□□□ -0.15
NPHP3-209ENST00000493732 SAMD9Q5K651 1589 aa14.12□□□□□ -0.15
NPHP3-209ENST00000493732 P3H3Q8IVL6 736 aa14.11□□□□□ -0.15
NPHP3-209ENST00000493732 THOC2Q8NI27 1593 aaKnown RBP14.11□□□□□ -0.15
NPHP3-209ENST00000493732 SETD5Q9C0A6 1442 aa14.11□□□□□ -0.15
NPHP3-209ENST00000493732 PHLDB1Q86UU1 1377 aa14.11□□□□□ -0.15
NPHP3-209ENST00000493732 MRC2Q9UBG0 1479 aa14.1□□□□□ -0.15
NPHP3-209ENST00000493732 ATP1B4Q9UN42 357 aaPredicted RBP14.09□□□□□ -0.15
NPHP3-209ENST00000493732 ACIN1Q9UKV3 1341 aaKnown RBP14.09□□□□□ -0.15
NPHP3-209ENST00000493732 RAB3GAP2Q9H2M9 1393 aa14.08□□□□□ -0.16
NPHP3-209ENST00000493732 SNAPC4Q5SXM2 1469 aa14.08□□□□□ -0.16
NPHP3-209ENST00000493732 ITGAEP38570 1179 aa14.06□□□□□ -0.16
NPHP3-209ENST00000493732 FAM50AQ14320 339 aaKnown RBP14.05□□□□□ -0.16
NPHP3-209ENST00000493732 MTUS2Q5JR59 1369 aa14.05□□□□□ -0.16
NPHP3-209ENST00000493732 TIMELESSQ9UNS1 1208 aa14.04□□□□□ -0.16
NPHP3-209ENST00000493732 PBRM1Q86U86 1689 aa14.04□□□□□ -0.16
NPHP3-209ENST00000493732 GRIN2BQ13224 1484 aa14.03□□□□□ -0.16
NPHP3-209ENST00000493732 CCDC18Q5T9S5 1454 aa14.03□□□□□ -0.16
NPHP3-209ENST00000493732 IFT140Q96RY7 1462 aa14.03□□□□□ -0.16
NPHP3-209ENST00000493732 SCAF1Q9H7N4 1312 aaKnown RBP14.02□□□□□ -0.17
NPHP3-209ENST00000493732 DNAJC5BQ9UF47 199 aa14.02□□□□□ -0.17
NPHP3-209ENST00000493732 FGD6Q6ZV73 1430 aa14.01□□□□□ -0.17
NPHP3-209ENST00000493732 ADAMTS12P58397 1594 aa14.01□□□□□ -0.17
NPHP3-209ENST00000493732 EHBP1L1Q8N3D4 1523 aa14□□□□□ -0.17
NPHP3-209ENST00000493732 IQGAP2Q13576 1575 aa13.99□□□□□ -0.17
NPHP3-209ENST00000493732 WDR62O43379 1518 aa13.98□□□□□ -0.17
NPHP3-209ENST00000493732 SUPT6HQ7KZ85 1726 aaKnown RBP13.98□□□□□ -0.17
NPHP3-209ENST00000493732 MAPKBP1O60336 1514 aa13.97□□□□□ -0.17
NPHP3-209ENST00000493732 MYOM3Q5VTT5 1437 aa13.97□□□□□ -0.17
NPHP3-209ENST00000493732 HECW1Q76N89 1606 aa13.96□□□□□ -0.17
NPHP3-209ENST00000493732 NEUROD1Q13562 356 aa13.96□□□□□ -0.17
NPHP3-209ENST00000493732 NCOA2Q15596 1464 aa13.95□□□□□ -0.18
NPHP3-209ENST00000493732 MIER1Q8N108 512 aa13.94□□□□□ -0.18
NPHP3-209ENST00000493732 UGGT2Q9NYU1 1516 aa13.94□□□□□ -0.18
NPHP3-209ENST00000493732 HFM1A2PYH4 1435 aa13.93□□□□□ -0.18
NPHP3-209ENST00000493732 ARHGEF11O15085 1522 aa13.92□□□□□ -0.18
NPHP3-209ENST00000493732 LRRIQ1Q96JM4 1722 aa13.91□□□□□ -0.18
NPHP3-209ENST00000493732 KIAA0586Q9BVV6 1533 aa13.91□□□□□ -0.18
NPHP3-209ENST00000493732 EPRSP07814 1512 aaKnown RBP13.88□□□□□ -0.19
NPHP3-209ENST00000493732 MIA2Q96PC5 1412 aa13.88□□□□□ -0.19
NPHP3-209ENST00000493732 UACAQ9BZF9 1416 aa13.88□□□□□ -0.19
NPHP3-209ENST00000493732 TCOF1Q13428 1488 aaKnown RBP13.88□□□□□ -0.19
NPHP3-209ENST00000493732 PTPN23Q9H3S7 1636 aa13.87□□□□□ -0.19
NPHP3-209ENST00000493732 PELP1Q8IZL8 1130 aaKnown RBP13.86□□□□□ -0.19
NPHP3-209ENST00000493732 AKNAQ7Z591 1439 aa13.86□□□□□ -0.19
NPHP3-209ENST00000493732 ERCC6Q03468 1493 aa13.86□□□□□ -0.19
NPHP3-209ENST00000493732 MAGI1Q96QZ7 1491 aaPredicted RBP13.86□□□□□ -0.19
NPHP3-209ENST00000493732 ZNF608Q9ULD9 1512 aaPredicted RBP13.85□□□□□ -0.19
NPHP3-209ENST00000493732 GRIN2AQ12879 1464 aa13.84□□□□□ -0.19
NPHP3-209ENST00000493732 NAIPQ13075 1403 aa13.84□□□□□ -0.19
NPHP3-209ENST00000493732 CDK11AQ9UQ88 783 aaPredicted RBP13.84□□□□□ -0.19
NPHP3-209ENST00000493732 GTF3C3Q9Y5Q9 886 aa13.84□□□□□ -0.19
NPHP3-209ENST00000493732 EIF4G3O43432 1585 aaKnown RBP13.83□□□□□ -0.2
NPHP3-209ENST00000493732 KIAA0556O60303 1618 aa13.82□□□□□ -0.2
NPHP3-209ENST00000493732 MAGI3Q5TCQ9 1506 aa13.82□□□□□ -0.2
NPHP3-209ENST00000493732 PTPRKQ15262 1439 aa13.81□□□□□ -0.2
NPHP3-209ENST00000493732 PPP1R15AO75807 674 aaPredicted RBP13.8□□□□□ -0.2
NPHP3-209ENST00000493732 YTHDC1Q96MU7 727 aaKnown RBP13.8□□□□□ -0.2
NPHP3-209ENST00000493732 SIN3AQ96ST3 1273 aa13.8□□□□□ -0.2
NPHP3-209ENST00000493732 DISP1Q96F81 1524 aa13.79□□□□□ -0.2
NPHP3-209ENST00000493732 SYNJ2O15056 1496 aa13.79□□□□□ -0.2
NPHP3-209ENST00000493732 TONSLQ96HA7 1378 aa13.79□□□□□ -0.2
NPHP3-209ENST00000493732 POTEDQ86YR6 584 aa13.78□□□□□ -0.2
NPHP3-209ENST00000493732 GCC2Q8IWJ2 1684 aa13.78□□□□□ -0.2
NPHP3-209ENST00000493732 CDK13Q14004 1512 aaKnown RBP13.77□□□□□ -0.21
NPHP3-209ENST00000493732 RAPGEF6Q8TEU7 1601 aa13.77□□□□□ -0.21
NPHP3-209ENST00000493732 CHMP7Q8WUX9 453 aaPredicted RBP13.76□□□□□ -0.21
NPHP3-209ENST00000493732 CARMIL2Q6F5E8 1435 aa13.76□□□□□ -0.21
NPHP3-209ENST00000493732 ROCK1Q13464 1354 aa13.75□□□□□ -0.21
NPHP3-209ENST00000493732 NUP153P49790 1475 aaKnown RBP13.74□□□□□ -0.21
NPHP3-209ENST00000493732 NUP160Q12769 1436 aa13.71□□□□□ -0.21
NPHP3-209ENST00000493732 TROQ12816 1431 aaPredicted RBP13.7□□□□□ -0.22
NPHP3-209ENST00000493732 CEP170Q5SW79 1584 aa13.69□□□□□ -0.22
NPHP3-209ENST00000493732 RRP7BPQ9NSQ0 103 aa13.68□□□□□ -0.22
NPHP3-209ENST00000493732 DAPK1P53355 1430 aa13.68□□□□□ -0.22
NPHP3-209ENST00000493732 DNMT1P26358 1616 aaKnown RBP13.68□□□□□ -0.22
NPHP3-209ENST00000493732 ITSN2Q9NZM3 1697 aa13.67□□□□□ -0.22
NPHP3-209ENST00000493732 CHIC2Q9UKJ5 165 aa13.67□□□□□ -0.22
NPHP3-209ENST00000493732 TRIM52Q96A61 297 aa13.66□□□□□ -0.22
NPHP3-209ENST00000493732 JPH4Q96JJ6 628 aa13.66□□□□□ -0.22
NPHP3-209ENST00000493732 ADCY10Q96PN6 1610 aa13.66□□□□□ -0.22
NPHP3-209ENST00000493732 MPHOSPH9Q99550 1183 aa13.64□□□□□ -0.23
NPHP3-209ENST00000493732 ABCC5O15440 1437 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms