RNA–Protein interactions for RNA: ENST00000490207.5

SMC4-222, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-222ENST00000490207 PRG4Q92954 1404 aaPredicted RBP33.8■■■■□ 3
SMC4-222ENST00000490207 KIAA0586Q9BVV6 1533 aa33.78■■■■□ 3
SMC4-222ENST00000490207 JPH4Q96JJ6 628 aa33.76■■■□□ 2.99
SMC4-222ENST00000490207 TRHP20396 242 aaPredicted RBP33.64■■■□□ 2.98
SMC4-222ENST00000490207 RAPGEF2Q9Y4G8 1499 aa33.63■■■□□ 2.97
SMC4-222ENST00000490207 IQGAP2Q13576 1575 aa33.61■■■□□ 2.97
SMC4-222ENST00000490207 CTTNBP2Q8WZ74 1663 aa33.48■■■□□ 2.95
SMC4-222ENST00000490207 ADCY10Q96PN6 1610 aa33.43■■■□□ 2.94
SMC4-222ENST00000490207 CARMIL2Q6F5E8 1435 aa33.43■■■□□ 2.94
SMC4-222ENST00000490207 PRXQ9BXM0 1461 aa33.41■■■□□ 2.94
SMC4-222ENST00000490207 UGGT2Q9NYU1 1516 aa33.38■■■□□ 2.93
SMC4-222ENST00000490207 DISP1Q96F81 1524 aa33.35■■■□□ 2.93
SMC4-222ENST00000490207 TNIKQ9UKE5 1360 aa33.34■■■□□ 2.93
SMC4-222ENST00000490207 PTPRGP23470 1445 aa33.32■■■□□ 2.92
SMC4-222ENST00000490207 KIAA0556O60303 1618 aa33.31■■■□□ 2.92
SMC4-222ENST00000490207 KIF13AQ9H1H9 1805 aa33.28■■■□□ 2.92
SMC4-222ENST00000490207 MAPKBP1O60336 1514 aa33.28■■■□□ 2.92
SMC4-222ENST00000490207 EEA1Q15075 1411 aa33.27■■■□□ 2.92
SMC4-222ENST00000490207 TTBK1Q5TCY1 1321 aaPredicted RBP33.25■■■□□ 2.91
SMC4-222ENST00000490207 NPM1P06748 294 aaKnown RBP eCLIP33.24■■■□□ 2.91
SMC4-222ENST00000490207 CSRNP3Q8WYN3 585 aa33.2■■■□□ 2.91
SMC4-222ENST00000490207 GOLGA3Q08378 1498 aa33.15■■■□□ 2.9
SMC4-222ENST00000490207 ABCC2Q92887 1545 aa33.14■■■□□ 2.9
SMC4-222ENST00000490207 UHRF1BP1LA0JNW5 1464 aa33.14■■■□□ 2.9
SMC4-222ENST00000490207 DIP2BQ9P265 1576 aa33.13■■■□□ 2.89
SMC4-222ENST00000490207 ABCC10Q5T3U5 1492 aa33.13■■■□□ 2.89
SMC4-222ENST00000490207 UACAQ9BZF9 1416 aa33.12■■■□□ 2.89
SMC4-222ENST00000490207 CHIC1Q5VXU3 224 aa33.07■■■□□ 2.88
SMC4-222ENST00000490207 KIF21BO75037 1637 aa33.03■■■□□ 2.88
SMC4-222ENST00000490207 FAM9AQ8IZU1 332 aaPredicted RBP33.03■■■□□ 2.88
SMC4-222ENST00000490207 FAM69CQ0P6D2 419 aa33■■■□□ 2.87
SMC4-222ENST00000490207 ZCCHC11Q5TAX3 1644 aaKnown RBP32.99■■■□□ 2.87
SMC4-222ENST00000490207 KDM5BQ9UGL1 1544 aa32.98■■■□□ 2.87
SMC4-222ENST00000490207 SAMD9Q5K651 1589 aa32.96■■■□□ 2.87
SMC4-222ENST00000490207 ASXL2Q76L83 1435 aa32.94■■■□□ 2.86
SMC4-222ENST00000490207 PLB1Q6P1J6 1458 aa32.94■■■□□ 2.86
SMC4-222ENST00000490207 ABCA8O94911 1581 aa32.94■■■□□ 2.86
SMC4-222ENST00000490207 TSPOAP1O95153 1857 aa32.89■■■□□ 2.86
SMC4-222ENST00000490207 GLI2P10070 1586 aa32.84■■■□□ 2.85
SMC4-222ENST00000490207 P3H3Q8IVL6 736 aa32.81■■■□□ 2.84
SMC4-222ENST00000490207 EPRSP07814 1512 aaKnown RBP32.77■■■□□ 2.84
SMC4-222ENST00000490207 WDR7Q9Y4E6 1490 aa32.75■■■□□ 2.83
SMC4-222ENST00000490207 PPRC1Q5VV67 1664 aaKnown RBP32.74■■■□□ 2.83
SMC4-222ENST00000490207 EFCAB5A4FU69 1503 aa32.73■■■□□ 2.83
SMC4-222ENST00000490207 RAPGEF6Q8TEU7 1601 aa32.73■■■□□ 2.83
SMC4-222ENST00000490207 MAP3K4Q9Y6R4 1608 aa32.72■■■□□ 2.83
SMC4-222ENST00000490207 KDM6BO15054 1643 aa32.71■■■□□ 2.83
SMC4-222ENST00000490207 RANGAP1P46060 587 aaPredicted RBP32.71■■■□□ 2.83
SMC4-222ENST00000490207 FHOD3Q2V2M9 1422 aa32.69■■■□□ 2.82
SMC4-222ENST00000490207 EHMT2Q96KQ7 1210 aa32.65■■■□□ 2.82
SMC4-222ENST00000490207 UBTFP17480 764 aaKnown RBP32.61■■■□□ 2.81
SMC4-222ENST00000490207 ATP10BO94823 1461 aa32.6■■■□□ 2.81
SMC4-222ENST00000490207 CFAP43Q8NDM7 1665 aa32.59■■■□□ 2.81
SMC4-222ENST00000490207 ARID3CA6NKF2 412 aa32.57■■■□□ 2.8
SMC4-222ENST00000490207 NUP153P49790 1475 aaKnown RBP32.54■■■□□ 2.8
SMC4-222ENST00000490207 TEX14Q8IWB6 1497 aa32.54■■■□□ 2.8
SMC4-222ENST00000490207 KCNH8Q96L42 1107 aa32.48■■■□□ 2.79
SMC4-222ENST00000490207 ARHGAP35Q9NRY4 1499 aa32.47■■■□□ 2.79
SMC4-222ENST00000490207 CD109Q6YHK3 1445 aa32.43■■■□□ 2.78
SMC4-222ENST00000490207 MAGI3Q5TCQ9 1506 aa32.43■■■□□ 2.78
SMC4-222ENST00000490207 ABCA9Q8IUA7 1624 aa32.4■■■□□ 2.78
SMC4-222ENST00000490207 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.4■■■□□ 2.78
SMC4-222ENST00000490207 HNRNPUL2Q1KMD3 747 aaKnown RBP32.4■■■□□ 2.78
SMC4-222ENST00000490207 FMN1Q68DA7 1419 aa32.37■■■□□ 2.77
SMC4-222ENST00000490207 HECW1Q76N89 1606 aa32.36■■■□□ 2.77
SMC4-222ENST00000490207 COL17A1Q9UMD9 1497 aaPredicted RBP32.35■■■□□ 2.77
SMC4-222ENST00000490207 CDK13Q14004 1512 aaKnown RBP32.31■■■□□ 2.76
SMC4-222ENST00000490207 AEBP2Q6ZN18 517 aaPredicted RBP32.23■■■□□ 2.75
SMC4-222ENST00000490207 PLEKHD1A6NEE1 506 aa32.22■■■□□ 2.75
SMC4-222ENST00000490207 LRRIQ1Q96JM4 1722 aa32.19■■■□□ 2.74
SMC4-222ENST00000490207 PCF11O94913 1555 aaKnown RBP32.17■■■□□ 2.74
SMC4-222ENST00000490207 ATP1B4Q9UN42 357 aaPredicted RBP32.17■■■□□ 2.74
SMC4-222ENST00000490207 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP32.16■■■□□ 2.744e-7■■□□□ 12.8
SMC4-222ENST00000490207 TTC37Q6PGP7 1564 aa32.16■■■□□ 2.74
SMC4-222ENST00000490207 ARAP3Q8WWN8 1544 aa32.16■■■□□ 2.74
SMC4-222ENST00000490207 CLIP1P30622 1438 aa32.13■■■□□ 2.73
SMC4-222ENST00000490207 NEO1Q92859 1461 aa32.13■■■□□ 2.73
SMC4-222ENST00000490207 PHLDB1Q86UU1 1377 aa32.1■■■□□ 2.73
SMC4-222ENST00000490207 CFAP74Q9C0B2 1584 aa32.1■■■□□ 2.73
SMC4-222ENST00000490207 CASKIN1Q8WXD9 1431 aa32.08■■■□□ 2.73
SMC4-222ENST00000490207 KIF14Q15058 1648 aa32.04■■■□□ 2.72
SMC4-222ENST00000490207 CCDC18Q5T9S5 1454 aa32.03■■■□□ 2.72
SMC4-222ENST00000490207 FYCO1Q9BQS8 1478 aa32.03■■■□□ 2.72
SMC4-222ENST00000490207 CDK11AQ9UQ88 783 aaPredicted RBP32.02■■■□□ 2.72
SMC4-222ENST00000490207 MYO5CQ9NQX4 1742 aa32■■■□□ 2.71
SMC4-222ENST00000490207 FRMPD1Q5SYB0 1578 aa32■■■□□ 2.71
SMC4-222ENST00000490207 FANCAO15360 1455 aa32■■■□□ 2.71
SMC4-222ENST00000490207 TROQ12816 1431 aaPredicted RBP32■■■□□ 2.71
SMC4-222ENST00000490207 KDM4FA0A1W2PPD8 638 aa31.98■■■□□ 2.71
SMC4-222ENST00000490207 ADGRL1O94910 1474 aa31.97■■■□□ 2.71
SMC4-222ENST00000490207 AKNAQ7Z591 1439 aa31.94■■■□□ 2.7
SMC4-222ENST00000490207 RICTORQ6R327 1708 aa31.94■■■□□ 2.7
SMC4-222ENST00000490207 PLCH2O75038 1416 aa31.92■■■□□ 2.7
SMC4-222ENST00000490207 CEP162Q5TB80 1403 aa31.91■■■□□ 2.7
SMC4-222ENST00000490207 RAPGEF3O95398 923 aa31.9■■■□□ 2.7
SMC4-222ENST00000490207 DENND4BO75064 1496 aaPredicted RBP31.89■■■□□ 2.7
SMC4-222ENST00000490207 ARHGEF40Q8TER5 1519 aa31.82■■■□□ 2.68
SMC4-222ENST00000490207 ARHGAP5Q13017 1502 aa31.8■■■□□ 2.68
SMC4-222ENST00000490207 ZMYM4Q5VZL5 1548 aa31.8■■■□□ 2.68
SMC4-222ENST00000490207 PREX2Q70Z35 1606 aa31.8■■■□□ 2.68
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms