RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 UBTFP17480 764 aaKnown RBP25.58■■□□□ 1.69
SYNE1-227ENST00000489156 CTTNBP2Q8WZ74 1663 aa25.54■■□□□ 1.68
SYNE1-227ENST00000489156 KIAA0586Q9BVV6 1533 aa25.5■■□□□ 1.67
SYNE1-227ENST00000489156 CLASP1Q7Z460 1538 aa25.49■■□□□ 1.67
SYNE1-227ENST00000489156 IQGAP2Q13576 1575 aa25.45■■□□□ 1.67
SYNE1-227ENST00000489156 TNIKQ9UKE5 1360 aa25.43■■□□□ 1.66
SYNE1-227ENST00000489156 JPH4Q96JJ6 628 aa25.4■■□□□ 1.66
SYNE1-227ENST00000489156 RANGAP1P46060 587 aaPredicted RBP25.4■■□□□ 1.66
SYNE1-227ENST00000489156 SHROOM2Q13796 1616 aa25.35■■□□□ 1.65
SYNE1-227ENST00000489156 UGGT2Q9NYU1 1516 aa25.31■■□□□ 1.64
SYNE1-227ENST00000489156 PRG4Q92954 1404 aaPredicted RBP25.29■■□□□ 1.64
SYNE1-227ENST00000489156 ERCC6L2Q5T890 1561 aa25.26■■□□□ 1.63
SYNE1-227ENST00000489156 DISP1Q96F81 1524 aa25.24■■□□□ 1.63
SYNE1-227ENST00000489156 CEP162Q5TB80 1403 aa25.24■■□□□ 1.63
SYNE1-227ENST00000489156 P3H3Q8IVL6 736 aa25.23■■□□□ 1.63
SYNE1-227ENST00000489156 CARMIL2Q6F5E8 1435 aa25.21■■□□□ 1.63
SYNE1-227ENST00000489156 SAMD9Q5K651 1589 aa25.2■■□□□ 1.62
SYNE1-227ENST00000489156 KIAA0556O60303 1618 aa25.2■■□□□ 1.62
SYNE1-227ENST00000489156 ARHGEF11O15085 1522 aa25.2■■□□□ 1.62
SYNE1-227ENST00000489156 CLIP1P30622 1438 aa25.19■■□□□ 1.62
SYNE1-227ENST00000489156 ARHGAP35Q9NRY4 1499 aa25.18■■□□□ 1.62
SYNE1-227ENST00000489156 DNAJC5Q9H3Z4 198 aa25.17■■□□□ 1.62
SYNE1-227ENST00000489156 EFCAB5A4FU69 1503 aa25.16■■□□□ 1.62
SYNE1-227ENST00000489156 RIMBP3CA6NJZ7 1639 aa25.16■■□□□ 1.62
SYNE1-227ENST00000489156 RIMBP3BA6NNM3 1639 aa25.16■■□□□ 1.62
SYNE1-227ENST00000489156 RIMBP3Q9UFD9 1639 aa25.16■■□□□ 1.62
SYNE1-227ENST00000489156 TTBK1Q5TCY1 1321 aaPredicted RBP25.14■■□□□ 1.62
SYNE1-227ENST00000489156 FHOD3Q2V2M9 1422 aa25.12■■□□□ 1.61
SYNE1-227ENST00000489156 ARAP1Q96P48 1450 aa25.06■■□□□ 1.6
SYNE1-227ENST00000489156 PTPRGP23470 1445 aa25.05■■□□□ 1.6
SYNE1-227ENST00000489156 CYB5RLQ6IPT4 315 aa24.99■■□□□ 1.59
SYNE1-227ENST00000489156 FMN1Q68DA7 1419 aa24.95■■□□□ 1.58
SYNE1-227ENST00000489156 PLB1Q6P1J6 1458 aa24.93■■□□□ 1.58
SYNE1-227ENST00000489156 UACAQ9BZF9 1416 aa24.89■■□□□ 1.58
SYNE1-227ENST00000489156 ABCA8O94911 1581 aa24.89■■□□□ 1.57
SYNE1-227ENST00000489156 RAPGEF6Q8TEU7 1601 aa24.87■■□□□ 1.57
SYNE1-227ENST00000489156 ATP1B4Q9UN42 357 aaPredicted RBP24.86■■□□□ 1.57
SYNE1-227ENST00000489156 VPS8Q8N3P4 1428 aa24.85■■□□□ 1.57
SYNE1-227ENST00000489156 PCF11O94913 1555 aaKnown RBP24.84■■□□□ 1.57
SYNE1-227ENST00000489156 ADCY10Q96PN6 1610 aa24.84■■□□□ 1.57
SYNE1-227ENST00000489156 ABCC2Q92887 1545 aa24.83■■□□□ 1.57
SYNE1-227ENST00000489156 CASKIN1Q8WXD9 1431 aa24.81■■□□□ 1.56
SYNE1-227ENST00000489156 ARID3CA6NKF2 412 aa24.81■■□□□ 1.56
SYNE1-227ENST00000489156 UHRF1BP1LA0JNW5 1464 aa24.81■■□□□ 1.56
SYNE1-227ENST00000489156 NUP153P49790 1475 aaKnown RBP24.79■■□□□ 1.56
SYNE1-227ENST00000489156 FYCO1Q9BQS8 1478 aa24.78■■□□□ 1.56
SYNE1-227ENST00000489156 HECW1Q76N89 1606 aa24.77■■□□□ 1.56
SYNE1-227ENST00000489156 LRRIQ1Q96JM4 1722 aa24.76■■□□□ 1.55
SYNE1-227ENST00000489156 TRIM26Q12899 539 aaPredicted RBP24.74■■□□□ 1.55
SYNE1-227ENST00000489156 ATP10BO94823 1461 aa24.71■■□□□ 1.55
SYNE1-227ENST00000489156 KDM5BQ9UGL1 1544 aa24.71■■□□□ 1.55
SYNE1-227ENST00000489156 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.7■■□□□ 1.55
SYNE1-227ENST00000489156 HNRNPUL2Q1KMD3 747 aaKnown RBP24.7■■□□□ 1.55
SYNE1-227ENST00000489156 EPRSP07814 1512 aaKnown RBP24.7■■□□□ 1.54
SYNE1-227ENST00000489156 NPM1P06748 294 aaKnown RBP eCLIP24.7■■□□□ 1.54
SYNE1-227ENST00000489156 ZCCHC11Q5TAX3 1644 aaKnown RBP24.7■■□□□ 1.54
SYNE1-227ENST00000489156 CDK13Q14004 1512 aaKnown RBP24.7■■□□□ 1.54
SYNE1-227ENST00000489156 PCGF6Q9BYE7 350 aa24.64■■□□□ 1.54
SYNE1-227ENST00000489156 CCDC18Q5T9S5 1454 aa24.64■■□□□ 1.54
SYNE1-227ENST00000489156 APLP2Q06481 763 aa24.64■■□□□ 1.53
SYNE1-227ENST00000489156 TIAM1Q13009 1591 aa24.58■■□□□ 1.53
SYNE1-227ENST00000489156 CFAP43Q8NDM7 1665 aa24.58■■□□□ 1.52
SYNE1-227ENST00000489156 PPARGC1BQ86YN6 1023 aaKnown RBP24.57■■□□□ 1.52
SYNE1-227ENST00000489156 ASXL2Q76L83 1435 aa24.56■■□□□ 1.52
SYNE1-227ENST00000489156 PLEKHD1A6NEE1 506 aa24.55■■□□□ 1.52
SYNE1-227ENST00000489156 CDK11AQ9UQ88 783 aaPredicted RBP24.55■■□□□ 1.52
SYNE1-227ENST00000489156 MAP3K1Q13233 1512 aa24.54■■□□□ 1.52
SYNE1-227ENST00000489156 MAPKBP1O60336 1514 aa24.53■■□□□ 1.52
SYNE1-227ENST00000489156 MAGI3Q5TCQ9 1506 aa24.53■■□□□ 1.52
SYNE1-227ENST00000489156 KANK4Q5T7N3 995 aaPredicted RBP24.51■■□□□ 1.51
SYNE1-227ENST00000489156 KCNH8Q96L42 1107 aa24.49■■□□□ 1.51
SYNE1-227ENST00000489156 WDR7Q9Y4E6 1490 aa24.49■■□□□ 1.51
SYNE1-227ENST00000489156 MTUS2Q5JR59 1369 aa24.48■■□□□ 1.51
SYNE1-227ENST00000489156 LRRC9Q6ZRR7 1453 aa24.47■■□□□ 1.51
SYNE1-227ENST00000489156 TROQ12816 1431 aaPredicted RBP24.46■■□□□ 1.51
SYNE1-227ENST00000489156 EHBP1L1Q8N3D4 1523 aa24.42■■□□□ 1.5
SYNE1-227ENST00000489156 KIF14Q15058 1648 aa24.4■■□□□ 1.5
SYNE1-227ENST00000489156 ABCC10Q5T3U5 1492 aa24.37■■□□□ 1.49
SYNE1-227ENST00000489156 DIP2BQ9P265 1576 aa24.36■■□□□ 1.49
SYNE1-227ENST00000489156 SUPT6HQ7KZ85 1726 aaKnown RBP24.36■■□□□ 1.49
SYNE1-227ENST00000489156 KIF13AQ9H1H9 1805 aa24.35■■□□□ 1.49
SYNE1-227ENST00000489156 FAM69CQ0P6D2 419 aa24.35■■□□□ 1.49
SYNE1-227ENST00000489156 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.34■■□□□ 1.49
SYNE1-227ENST00000489156 TTC37Q6PGP7 1564 aa24.31■■□□□ 1.48
SYNE1-227ENST00000489156 NCOA2Q15596 1464 aa24.31■■□□□ 1.48
SYNE1-227ENST00000489156 TRHP20396 242 aaPredicted RBP24.31■■□□□ 1.48
SYNE1-227ENST00000489156 ABCA9Q8IUA7 1624 aa24.3■■□□□ 1.48
SYNE1-227ENST00000489156 GLI2P10070 1586 aa24.3■■□□□ 1.48
SYNE1-227ENST00000489156 TSPOAP1O95153 1857 aa24.25■■□□□ 1.47
SYNE1-227ENST00000489156 MAP3K4Q9Y6R4 1608 aa24.24■■□□□ 1.47
SYNE1-227ENST00000489156 CDC42BPAQ5VT25 1732 aa24.24■■□□□ 1.47
SYNE1-227ENST00000489156 CCNB3Q8WWL7 1395 aa24.24■■□□□ 1.47
SYNE1-227ENST00000489156 MYO5CQ9NQX4 1742 aa24.24■■□□□ 1.47
SYNE1-227ENST00000489156 CD109Q6YHK3 1445 aa24.23■■□□□ 1.47
SYNE1-227ENST00000489156 PHLDB1Q86UU1 1377 aa24.21■■□□□ 1.47
SYNE1-227ENST00000489156 GPATCH8Q9UKJ3 1502 aaKnown RBP24.21■■□□□ 1.47
SYNE1-227ENST00000489156 CDC42BPBQ9Y5S2 1711 aa24.2■■□□□ 1.46
SYNE1-227ENST00000489156 PLCH2O75038 1416 aa24.18■■□□□ 1.46
SYNE1-227ENST00000489156 PREX2Q70Z35 1606 aa24.17■■□□□ 1.46
SYNE1-227ENST00000489156 ITSN2Q9NZM3 1697 aa24.17■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms