RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 ADAMTS12P58397 1594 aa19.05■□□□□ 0.64
HDAC6-230ENST00000488543 CHMP7Q8WUX9 453 aaPredicted RBP19.02■□□□□ 0.64
HDAC6-230ENST00000488543 VPS8Q8N3P4 1428 aa19■□□□□ 0.63
HDAC6-230ENST00000488543 ARAP1Q96P48 1450 aa18.99■□□□□ 0.63
HDAC6-230ENST00000488543 MAGI1Q96QZ7 1491 aaPredicted RBP18.99■□□□□ 0.63
HDAC6-230ENST00000488543 P3H3Q8IVL6 736 aa18.97■□□□□ 0.63
HDAC6-230ENST00000488543 SYNJ2O15056 1496 aa18.95■□□□□ 0.62
HDAC6-230ENST00000488543 GRIN2AQ12879 1464 aa18.94■□□□□ 0.62
HDAC6-230ENST00000488543 ARHGAP35Q9NRY4 1499 aa18.94■□□□□ 0.62
HDAC6-230ENST00000488543 CTTNBP2Q8WZ74 1663 aa18.93■□□□□ 0.62
HDAC6-230ENST00000488543 SLC24A1O60721 1099 aa18.89■□□□□ 0.61
HDAC6-230ENST00000488543 CEP170Q5SW79 1584 aa18.84■□□□□ 0.61
HDAC6-230ENST00000488543 FHOD3Q2V2M9 1422 aa18.82■□□□□ 0.6
HDAC6-230ENST00000488543 KIAA0586Q9BVV6 1533 aa18.82■□□□□ 0.6
HDAC6-230ENST00000488543 TTBK1Q5TCY1 1321 aaPredicted RBP18.81■□□□□ 0.6
HDAC6-230ENST00000488543 IQGAP2Q13576 1575 aa18.81■□□□□ 0.6
HDAC6-230ENST00000488543 NUP160Q12769 1436 aa18.8■□□□□ 0.6
HDAC6-230ENST00000488543 EFCAB5A4FU69 1503 aa18.79■□□□□ 0.6
HDAC6-230ENST00000488543 CHD1O14646 1710 aa18.79■□□□□ 0.6
HDAC6-230ENST00000488543 JPH4Q96JJ6 628 aa18.77■□□□□ 0.59
HDAC6-230ENST00000488543 SAMD9Q5K651 1589 aa18.74■□□□□ 0.59
HDAC6-230ENST00000488543 ATP1B4Q9UN42 357 aaPredicted RBP18.73■□□□□ 0.59
HDAC6-230ENST00000488543 UGGT2Q9NYU1 1516 aa18.71■□□□□ 0.58
HDAC6-230ENST00000488543 APLP2Q06481 763 aa18.7■□□□□ 0.58
HDAC6-230ENST00000488543 DISP1Q96F81 1524 aa18.69■□□□□ 0.58
HDAC6-230ENST00000488543 PCF11O94913 1555 aaKnown RBP18.68■□□□□ 0.58
HDAC6-230ENST00000488543 MAP3K1Q13233 1512 aa18.65■□□□□ 0.58
HDAC6-230ENST00000488543 KANK4Q5T7N3 995 aaPredicted RBP18.65■□□□□ 0.58
HDAC6-230ENST00000488543 TIAM1Q13009 1591 aa18.64■□□□□ 0.57
HDAC6-230ENST00000488543 FMN1Q68DA7 1419 aa18.63■□□□□ 0.57
HDAC6-230ENST00000488543 CFAP43Q8NDM7 1665 aa18.62■□□□□ 0.57
HDAC6-230ENST00000488543 KIAA0556O60303 1618 aa18.62■□□□□ 0.57
HDAC6-230ENST00000488543 PRG4Q92954 1404 aaPredicted RBP18.62■□□□□ 0.57
HDAC6-230ENST00000488543 FYCO1Q9BQS8 1478 aa18.6■□□□□ 0.57
HDAC6-230ENST00000488543 CASKIN1Q8WXD9 1431 aa18.6■□□□□ 0.57
HDAC6-230ENST00000488543 ARID3CA6NKF2 412 aa18.6■□□□□ 0.57
HDAC6-230ENST00000488543 CARMIL2Q6F5E8 1435 aa18.58■□□□□ 0.57
HDAC6-230ENST00000488543 OSCARQ8IYS5 282 aa18.58■□□□□ 0.56
HDAC6-230ENST00000488543 CLASP1Q7Z460 1538 aa18.55■□□□□ 0.56
HDAC6-230ENST00000488543 ERCC6L2Q5T890 1561 aa18.55■□□□□ 0.56
HDAC6-230ENST00000488543 LRRIQ1Q96JM4 1722 aa18.54■□□□□ 0.56
HDAC6-230ENST00000488543 LRRC9Q6ZRR7 1453 aa18.53■□□□□ 0.56
HDAC6-230ENST00000488543 SHROOM2Q13796 1616 aa18.51■□□□□ 0.55
HDAC6-230ENST00000488543 PLB1Q6P1J6 1458 aa18.5■□□□□ 0.55
HDAC6-230ENST00000488543 PTPRGP23470 1445 aa18.48■□□□□ 0.55
HDAC6-230ENST00000488543 RRBP1Q9P2E9 1410 aaKnown RBP18.46■□□□□ 0.55
HDAC6-230ENST00000488543 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.44■□□□□ 0.54
HDAC6-230ENST00000488543 HNRNPUL2Q1KMD3 747 aaKnown RBP18.44■□□□□ 0.54
HDAC6-230ENST00000488543 CDK13Q14004 1512 aaKnown RBP18.43■□□□□ 0.54
HDAC6-230ENST00000488543 NUP153P49790 1475 aaKnown RBP18.43■□□□□ 0.54
HDAC6-230ENST00000488543 EPRSP07814 1512 aaKnown RBP18.43■□□□□ 0.54
HDAC6-230ENST00000488543 HECW1Q76N89 1606 aa18.42■□□□□ 0.54
HDAC6-230ENST00000488543 RAPGEF6Q8TEU7 1601 aa18.42■□□□□ 0.54
HDAC6-230ENST00000488543 MTUS2Q5JR59 1369 aa18.39■□□□□ 0.53
HDAC6-230ENST00000488543 PHLDB1Q86UU1 1377 aa18.38■□□□□ 0.53
HDAC6-230ENST00000488543 MAGI3Q5TCQ9 1506 aa18.37■□□□□ 0.53
HDAC6-230ENST00000488543 CCDC18Q5T9S5 1454 aa18.37■□□□□ 0.53
HDAC6-230ENST00000488543 ABCA8O94911 1581 aa18.37■□□□□ 0.53
HDAC6-230ENST00000488543 CCNB3Q8WWL7 1395 aa18.36■□□□□ 0.53
HDAC6-230ENST00000488543 ZEB1P37275 1124 aaPredicted RBP18.36■□□□□ 0.53
HDAC6-230ENST00000488543 UACAQ9BZF9 1416 aa18.34■□□□□ 0.53
HDAC6-230ENST00000488543 EHBP1L1Q8N3D4 1523 aa18.33■□□□□ 0.52
HDAC6-230ENST00000488543 ATP10BO94823 1461 aa18.32■□□□□ 0.52
HDAC6-230ENST00000488543 SUPT6HQ7KZ85 1726 aaKnown RBP18.3■□□□□ 0.52
HDAC6-230ENST00000488543 CDK11AQ9UQ88 783 aaPredicted RBP18.28■□□□□ 0.52
HDAC6-230ENST00000488543 ARHGEF11O15085 1522 aa18.27■□□□□ 0.52
HDAC6-230ENST00000488543 NCOA2Q15596 1464 aa18.27■□□□□ 0.51
HDAC6-230ENST00000488543 CCER1Q8TC90 406 aaPredicted RBP18.26■□□□□ 0.51
HDAC6-230ENST00000488543 PLEKHD1A6NEE1 506 aa18.25■□□□□ 0.51
HDAC6-230ENST00000488543 ABCC2Q92887 1545 aa18.24■□□□□ 0.51
HDAC6-230ENST00000488543 ITGAEP38570 1179 aa18.23■□□□□ 0.51
HDAC6-230ENST00000488543 FGD6Q6ZV73 1430 aa18.22■□□□□ 0.51
HDAC6-230ENST00000488543 FAM50AQ14320 339 aaKnown RBP18.22■□□□□ 0.51
HDAC6-230ENST00000488543 TROQ12816 1431 aaPredicted RBP18.21■□□□□ 0.51
HDAC6-230ENST00000488543 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.2■□□□□ 0.5
HDAC6-230ENST00000488543 MYOM3Q5VTT5 1437 aa18.2■□□□□ 0.5
HDAC6-230ENST00000488543 CYB5RLQ6IPT4 315 aa18.19■□□□□ 0.5
HDAC6-230ENST00000488543 UHRF1BP1LA0JNW5 1464 aa18.18■□□□□ 0.5
HDAC6-230ENST00000488543 KCNH8Q96L42 1107 aa18.17■□□□□ 0.5
HDAC6-230ENST00000488543 ADCY10Q96PN6 1610 aa18.17■□□□□ 0.5
HDAC6-230ENST00000488543 KIF14Q15058 1648 aa18.15■□□□□ 0.5
HDAC6-230ENST00000488543 KDM5BQ9UGL1 1544 aa18.15■□□□□ 0.5
HDAC6-230ENST00000488543 PTPN23Q9H3S7 1636 aa18.14■□□□□ 0.49
HDAC6-230ENST00000488543 ZCCHC11Q5TAX3 1644 aaKnown RBP18.13■□□□□ 0.49
HDAC6-230ENST00000488543 ZNF644Q9H582 1327 aaPredicted RBP18.11■□□□□ 0.49
HDAC6-230ENST00000488543 RIMBP3CA6NJZ7 1639 aa18.11■□□□□ 0.49
HDAC6-230ENST00000488543 RIMBP3BA6NNM3 1639 aa18.11■□□□□ 0.49
HDAC6-230ENST00000488543 RIMBP3Q9UFD9 1639 aa18.11■□□□□ 0.49
HDAC6-230ENST00000488543 TCOF1Q13428 1488 aaKnown RBP18.11■□□□□ 0.49
HDAC6-230ENST00000488543 ZNF777Q9ULD5 760 aaPredicted RBP18.08■□□□□ 0.49
HDAC6-230ENST00000488543 GPATCH8Q9UKJ3 1502 aaKnown RBP18.07■□□□□ 0.48
HDAC6-230ENST00000488543 NPM1P06748 294 aaKnown RBP eCLIP18.07■□□□□ 0.48
HDAC6-230ENST00000488543 CFDP1Q9UEE9 299 aaPredicted RBP18.07■□□□□ 0.48
HDAC6-230ENST00000488543 DHX57Q6P158 1386 aaKnown RBP18.07■□□□□ 0.48
HDAC6-230ENST00000488543 MIA2Q96PC5 1412 aa18.07■□□□□ 0.48
HDAC6-230ENST00000488543 PTPRKQ15262 1439 aa18.06■□□□□ 0.48
HDAC6-230ENST00000488543 ABCC10Q5T3U5 1492 aa18.06■□□□□ 0.48
HDAC6-230ENST00000488543 SETD5Q9C0A6 1442 aa18.05■□□□□ 0.48
HDAC6-230ENST00000488543 RAB3GAP2Q9H2M9 1393 aa18.05■□□□□ 0.48
HDAC6-230ENST00000488543 SCAF1Q9H7N4 1312 aaKnown RBP18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms