RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 ABCA10Q8WWZ4 1543 aa13.53□□□□□ -0.24
USP40-216ENST00000485943 SNAPC4Q5SXM2 1469 aa13.51□□□□□ -0.25
USP40-216ENST00000485943 MAGI1Q96QZ7 1491 aaPredicted RBP13.49□□□□□ -0.25
USP40-216ENST00000485943 CHD1O14646 1710 aa13.49□□□□□ -0.25
USP40-216ENST00000485943 POTEDQ86YR6 584 aa13.48□□□□□ -0.25
USP40-216ENST00000485943 KIF27Q86VH2 1401 aa13.46□□□□□ -0.26
USP40-216ENST00000485943 ABCA5Q8WWZ7 1642 aa13.46□□□□□ -0.26
USP40-216ENST00000485943 SYNJ2O15056 1496 aa13.42□□□□□ -0.26
USP40-216ENST00000485943 ERICH3Q5RHP9 1530 aa13.4□□□□□ -0.26
USP40-216ENST00000485943 FHAD1B1AJZ9 1412 aa13.38□□□□□ -0.27
USP40-216ENST00000485943 ADAMTS12P58397 1594 aa13.37□□□□□ -0.27
USP40-216ENST00000485943 CUL7Q14999 1698 aa13.35□□□□□ -0.27
USP40-216ENST00000485943 GRIN2AQ12879 1464 aa13.34□□□□□ -0.27
USP40-216ENST00000485943 MYCNP04198 464 aaPredicted RBP13.31□□□□□ -0.28
USP40-216ENST00000485943 CARMIL1Q5VZK9 1371 aa13.29□□□□□ -0.28
USP40-216ENST00000485943 FAM9AQ8IZU1 332 aaPredicted RBP13.27□□□□□ -0.29
USP40-216ENST00000485943 RIMBP3CA6NJZ7 1639 aa13.27□□□□□ -0.29
USP40-216ENST00000485943 RIMBP3BA6NNM3 1639 aa13.27□□□□□ -0.29
USP40-216ENST00000485943 RIMBP3Q9UFD9 1639 aa13.27□□□□□ -0.29
USP40-216ENST00000485943 ARHGEF11O15085 1522 aa13.26□□□□□ -0.29
USP40-216ENST00000485943 IGF1RP08069 1367 aa13.26□□□□□ -0.29
USP40-216ENST00000485943 CYB5RLQ6IPT4 315 aa13.25□□□□□ -0.29
USP40-216ENST00000485943 DCAF8L1A6NGE4 600 aa13.23□□□□□ -0.29
USP40-216ENST00000485943 CEP170Q5SW79 1584 aa13.23□□□□□ -0.29
USP40-216ENST00000485943 CLASP1Q7Z460 1538 aa13.23□□□□□ -0.29
USP40-216ENST00000485943 RAPGEF2Q9Y4G8 1499 aa13.22□□□□□ -0.29
USP40-216ENST00000485943 EEA1Q15075 1411 aa13.22□□□□□ -0.29
USP40-216ENST00000485943 NUP160Q12769 1436 aa13.21□□□□□ -0.3
USP40-216ENST00000485943 TTBK1Q5TCY1 1321 aaPredicted RBP13.2□□□□□ -0.3
USP40-216ENST00000485943 ATXN8OSP0DMR3 200 aa13.2□□□□□ -0.3
USP40-216ENST00000485943 JPH4Q96JJ6 628 aa13.19□□□□□ -0.3
USP40-216ENST00000485943 RUSC2Q8N2Y8 1516 aa13.18□□□□□ -0.3
USP40-216ENST00000485943 CARMIL2Q6F5E8 1435 aa13.15□□□□□ -0.3
USP40-216ENST00000485943 PRG4Q92954 1404 aaPredicted RBP13.15□□□□□ -0.3
USP40-216ENST00000485943 KIAA0586Q9BVV6 1533 aa13.15□□□□□ -0.3
USP40-216ENST00000485943 IQGAP2Q13576 1575 aa13.13□□□□□ -0.31
USP40-216ENST00000485943 NPM1P06748 294 aaKnown RBP eCLIP13.13□□□□□ -0.31
USP40-216ENST00000485943 CTTNBP2Q8WZ74 1663 aa13.12□□□□□ -0.31
USP40-216ENST00000485943 RANGAP1P46060 587 aaPredicted RBP13.12□□□□□ -0.31
USP40-216ENST00000485943 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.12□□□□□ -0.31
USP40-216ENST00000485943 ARAP1Q96P48 1450 aa13.11□□□□□ -0.31
USP40-216ENST00000485943 UBTFP17480 764 aaKnown RBP13.11□□□□□ -0.31
USP40-216ENST00000485943 TRHP20396 242 aaPredicted RBP13.11□□□□□ -0.31
USP40-216ENST00000485943 SHROOM2Q13796 1616 aa13.09□□□□□ -0.31
USP40-216ENST00000485943 GOLGA3Q08378 1498 aa13.05□□□□□ -0.32
USP40-216ENST00000485943 PRXQ9BXM0 1461 aa13.05□□□□□ -0.32
USP40-216ENST00000485943 U3KPZ7 1027 aaPredicted RBP13.05□□□□□ -0.32
USP40-216ENST00000485943 ERCC6L2Q5T890 1561 aa13.04□□□□□ -0.32
USP40-216ENST00000485943 PTPRGP23470 1445 aa13.03□□□□□ -0.32
USP40-216ENST00000485943 TNIKQ9UKE5 1360 aa13.02□□□□□ -0.33
USP40-216ENST00000485943 KIF21BO75037 1637 aa13.02□□□□□ -0.33
USP40-216ENST00000485943 P3H3Q8IVL6 736 aa13□□□□□ -0.33
USP40-216ENST00000485943 ATF5Q9Y2D1 282 aaPredicted RBP12.99□□□□□ -0.33
USP40-216ENST00000485943 UGGT2Q9NYU1 1516 aa12.98□□□□□ -0.33
USP40-216ENST00000485943 KIAA0556O60303 1618 aa12.97□□□□□ -0.33
USP40-216ENST00000485943 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.96□□□□□ -0.33
USP40-216ENST00000485943 HNRNPUL2Q1KMD3 747 aaKnown RBP12.96□□□□□ -0.33
USP40-216ENST00000485943 ATP1B4Q9UN42 357 aaPredicted RBP12.94□□□□□ -0.34
USP40-216ENST00000485943 SAMD1Q6SPF0 538 aaPredicted RBP12.93□□□□□ -0.34
USP40-216ENST00000485943 UACAQ9BZF9 1416 aa12.91□□□□□ -0.34
USP40-216ENST00000485943 DISP1Q96F81 1524 aa12.91□□□□□ -0.34
USP40-216ENST00000485943 ARID3CA6NKF2 412 aa12.88□□□□□ -0.35
USP40-216ENST00000485943 ADCY10Q96PN6 1610 aa12.88□□□□□ -0.35
USP40-216ENST00000485943 EFCAB5A4FU69 1503 aa12.88□□□□□ -0.35
USP40-216ENST00000485943 ABCC2Q92887 1545 aa12.87□□□□□ -0.35
USP40-216ENST00000485943 FAM69CQ0P6D2 419 aa12.85□□□□□ -0.35
USP40-216ENST00000485943 FHOD3Q2V2M9 1422 aa12.85□□□□□ -0.35
USP40-216ENST00000485943 SAMD9Q5K651 1589 aa12.83□□□□□ -0.36
USP40-216ENST00000485943 PLB1Q6P1J6 1458 aa12.83□□□□□ -0.36
USP40-216ENST00000485943 UHRF1BP1LA0JNW5 1464 aa12.82□□□□□ -0.36
USP40-216ENST00000485943 RAPGEF6Q8TEU7 1601 aa12.81□□□□□ -0.36
USP40-216ENST00000485943 FMN1Q68DA7 1419 aa12.81□□□□□ -0.36
USP40-216ENST00000485943 MAPKBP1O60336 1514 aa12.81□□□□□ -0.36
USP40-216ENST00000485943 ZCCHC11Q5TAX3 1644 aaKnown RBP12.8□□□□□ -0.36
USP40-216ENST00000485943 KCNH8Q96L42 1107 aa12.8□□□□□ -0.36
USP40-216ENST00000485943 ASXL2Q76L83 1435 aa12.79□□□□□ -0.36
USP40-216ENST00000485943 TSPOAP1O95153 1857 aa12.78□□□□□ -0.36
USP40-216ENST00000485943 CLIP1P30622 1438 aa12.78□□□□□ -0.36
USP40-216ENST00000485943 CDK11AQ9UQ88 783 aaPredicted RBP12.77□□□□□ -0.37
USP40-216ENST00000485943 ABCA8O94911 1581 aa12.77□□□□□ -0.37
USP40-216ENST00000485943 PLEKHD1A6NEE1 506 aa12.76□□□□□ -0.37
USP40-216ENST00000485943 KDM5BQ9UGL1 1544 aa12.76□□□□□ -0.37
USP40-216ENST00000485943 FKBP8Q14318 412 aa12.75□□□□□ -0.37
USP40-216ENST00000485943 ABCC10Q5T3U5 1492 aa12.75□□□□□ -0.37
USP40-216ENST00000485943 KIF13AQ9H1H9 1805 aa12.74□□□□□ -0.37
USP40-216ENST00000485943 HECW1Q76N89 1606 aa12.74□□□□□ -0.37
USP40-216ENST00000485943 ARHGAP35Q9NRY4 1499 aa12.73□□□□□ -0.37
USP40-216ENST00000485943 WDR7Q9Y4E6 1490 aa12.73□□□□□ -0.37
USP40-216ENST00000485943 DIP2BQ9P265 1576 aa12.73□□□□□ -0.37
USP40-216ENST00000485943 LOC105371045A0A1W2PR82 267 aa12.72□□□□□ -0.37
USP40-216ENST00000485943 APLP2Q06481 763 aa12.7□□□□□ -0.38
USP40-216ENST00000485943 CEP162Q5TB80 1403 aa12.7□□□□□ -0.38
USP40-216ENST00000485943 TEX14Q8IWB6 1497 aa12.69□□□□□ -0.38
USP40-216ENST00000485943 ATP10BO94823 1461 aa12.68□□□□□ -0.38
USP40-216ENST00000485943 EPRSP07814 1512 aaKnown RBP12.67□□□□□ -0.38
USP40-216ENST00000485943 NUP153P49790 1475 aaKnown RBP12.67□□□□□ -0.38
USP40-216ENST00000485943 ZNF219Q9P2Y4 722 aaPredicted RBP12.67□□□□□ -0.38
USP40-216ENST00000485943 CCDC18Q5T9S5 1454 aa12.65□□□□□ -0.38
USP40-216ENST00000485943 CD109Q6YHK3 1445 aa12.65□□□□□ -0.38
USP40-216ENST00000485943 GLI2P10070 1586 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms