RNA–Protein interactions for RNA: ENST00000485610.5

SMARCD3-212, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best)

Gene SMARCD3, Length 1,480 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-212ENST00000485610 NUP160Q12769 1436 aa28.77■■■□□ 2.2
SMARCD3-212ENST00000485610 TNIKQ9UKE5 1360 aa28.76■■■□□ 2.19
SMARCD3-212ENST00000485610 IQGAP2Q13576 1575 aa28.7■■■□□ 2.18
SMARCD3-212ENST00000485610 KIAA0586Q9BVV6 1533 aa28.68■■■□□ 2.18
SMARCD3-212ENST00000485610 CLASP1Q7Z460 1538 aa28.62■■■□□ 2.17
SMARCD3-212ENST00000485610 CEP162Q5TB80 1403 aa28.57■■■□□ 2.16
SMARCD3-212ENST00000485610 SHROOM2Q13796 1616 aa28.53■■■□□ 2.16
SMARCD3-212ENST00000485610 UGGT2Q9NYU1 1516 aa28.53■■■□□ 2.16
SMARCD3-212ENST00000485610 EFCAB5A4FU69 1503 aa28.51■■■□□ 2.15
SMARCD3-212ENST00000485610 CLIP1P30622 1438 aa28.5■■■□□ 2.15
SMARCD3-212ENST00000485610 OSCARQ8IYS5 282 aa28.5■■■□□ 2.15
SMARCD3-212ENST00000485610 SAMD9Q5K651 1589 aa28.49■■■□□ 2.15
SMARCD3-212ENST00000485610 RANGAP1P46060 587 aaPredicted RBP28.43■■■□□ 2.14
SMARCD3-212ENST00000485610 ARHGAP35Q9NRY4 1499 aa28.42■■■□□ 2.14
SMARCD3-212ENST00000485610 KIAA0556O60303 1618 aa28.42■■■□□ 2.14
SMARCD3-212ENST00000485610 JPH4Q96JJ6 628 aa28.4■■■□□ 2.14
SMARCD3-212ENST00000485610 DISP1Q96F81 1524 aa28.38■■■□□ 2.13
SMARCD3-212ENST00000485610 CARMIL2Q6F5E8 1435 aa28.34■■■□□ 2.13
SMARCD3-212ENST00000485610 PRG4Q92954 1404 aaPredicted RBP28.33■■■□□ 2.13
SMARCD3-212ENST00000485610 ARAP1Q96P48 1450 aa28.33■■■□□ 2.13
SMARCD3-212ENST00000485610 FHOD3Q2V2M9 1422 aa28.28■■■□□ 2.12
SMARCD3-212ENST00000485610 ERCC6L2Q5T890 1561 aa28.27■■■□□ 2.12
SMARCD3-212ENST00000485610 P3H3Q8IVL6 736 aa28.22■■■□□ 2.11
SMARCD3-212ENST00000485610 VPS8Q8N3P4 1428 aa28.18■■■□□ 2.1
SMARCD3-212ENST00000485610 FMN1Q68DA7 1419 aa28.18■■■□□ 2.1
SMARCD3-212ENST00000485610 ARHGEF11O15085 1522 aa28.13■■■□□ 2.09
SMARCD3-212ENST00000485610 PCF11O94913 1555 aaKnown RBP28.12■■■□□ 2.09
SMARCD3-212ENST00000485610 RIMBP3CA6NJZ7 1639 aa28.09■■■□□ 2.09
SMARCD3-212ENST00000485610 RIMBP3BA6NNM3 1639 aa28.09■■■□□ 2.09
SMARCD3-212ENST00000485610 RIMBP3Q9UFD9 1639 aa28.09■■■□□ 2.09
SMARCD3-212ENST00000485610 PTPRGP23470 1445 aa28.08■■■□□ 2.08
SMARCD3-212ENST00000485610 RAPGEF6Q8TEU7 1601 aa28.07■■■□□ 2.08
SMARCD3-212ENST00000485610 FYCO1Q9BQS8 1478 aa28.06■■■□□ 2.08
SMARCD3-212ENST00000485610 HECW1Q76N89 1606 aa28.04■■■□□ 2.08
SMARCD3-212ENST00000485610 ABCA8O94911 1581 aa28.03■■■□□ 2.08
SMARCD3-212ENST00000485610 CASKIN1Q8WXD9 1431 aa28.03■■■□□ 2.08
SMARCD3-212ENST00000485610 TTBK1Q5TCY1 1321 aaPredicted RBP28.01■■■□□ 2.08
SMARCD3-212ENST00000485610 PLB1Q6P1J6 1458 aa27.99■■■□□ 2.07
SMARCD3-212ENST00000485610 LRRIQ1Q96JM4 1722 aa27.98■■■□□ 2.07
SMARCD3-212ENST00000485610 UACAQ9BZF9 1416 aa27.94■■■□□ 2.06
SMARCD3-212ENST00000485610 ABCC2Q92887 1545 aa27.93■■■□□ 2.06
SMARCD3-212ENST00000485610 CFAP43Q8NDM7 1665 aa27.93■■■□□ 2.06
SMARCD3-212ENST00000485610 NUP153P49790 1475 aaKnown RBP27.91■■■□□ 2.06
SMARCD3-212ENST00000485610 UHRF1BP1LA0JNW5 1464 aa27.9■■■□□ 2.06
SMARCD3-212ENST00000485610 ADCY10Q96PN6 1610 aa27.89■■■□□ 2.06
SMARCD3-212ENST00000485610 CCDC18Q5T9S5 1454 aa27.88■■■□□ 2.05
SMARCD3-212ENST00000485610 TIAM1Q13009 1591 aa27.86■■■□□ 2.05
SMARCD3-212ENST00000485610 EPRSP07814 1512 aaKnown RBP27.85■■■□□ 2.05
SMARCD3-212ENST00000485610 MAP3K1Q13233 1512 aa27.85■■■□□ 2.05
SMARCD3-212ENST00000485610 ATP1B4Q9UN42 357 aaPredicted RBP27.84■■■□□ 2.05
SMARCD3-212ENST00000485610 CDK13Q14004 1512 aaKnown RBP27.81■■■□□ 2.04
SMARCD3-212ENST00000485610 APLP2Q06481 763 aa27.79■■■□□ 2.04
SMARCD3-212ENST00000485610 ZCCHC11Q5TAX3 1644 aaKnown RBP27.78■■■□□ 2.04
SMARCD3-212ENST00000485610 KDM5BQ9UGL1 1544 aa27.76■■■□□ 2.03
SMARCD3-212ENST00000485610 ATP10BO94823 1461 aa27.74■■■□□ 2.03
SMARCD3-212ENST00000485610 DNAJC5Q9H3Z4 198 aa27.74■■■□□ 2.03
SMARCD3-212ENST00000485610 CYB5RLQ6IPT4 315 aa27.71■■■□□ 2.03
SMARCD3-212ENST00000485610 ARID3CA6NKF2 412 aa27.7■■■□□ 2.03
SMARCD3-212ENST00000485610 EHBP1L1Q8N3D4 1523 aa27.67■■■□□ 2.02
SMARCD3-212ENST00000485610 LRRC9Q6ZRR7 1453 aa27.67■■■□□ 2.02
SMARCD3-212ENST00000485610 MAGI3Q5TCQ9 1506 aa27.65■■■□□ 2.02
SMARCD3-212ENST00000485610 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.64■■■□□ 2.01
SMARCD3-212ENST00000485610 HNRNPUL2Q1KMD3 747 aaKnown RBP27.64■■■□□ 2.01
SMARCD3-212ENST00000485610 MTUS2Q5JR59 1369 aa27.61■■■□□ 2.01
SMARCD3-212ENST00000485610 CDK11AQ9UQ88 783 aaPredicted RBP27.61■■■□□ 2.01
SMARCD3-212ENST00000485610 SUPT6HQ7KZ85 1726 aaKnown RBP27.59■■■□□ 2.01
SMARCD3-212ENST00000485610 TROQ12816 1431 aaPredicted RBP27.58■■■□□ 2.01
SMARCD3-212ENST00000485610 KANK4Q5T7N3 995 aaPredicted RBP27.57■■■□□ 2
SMARCD3-212ENST00000485610 NPM1P06748 294 aaKnown RBP eCLIP27.57■■■□□ 2
SMARCD3-212ENST00000485610 MAPKBP1O60336 1514 aa27.54■■■□□ 2
SMARCD3-212ENST00000485610 KIF14Q15058 1648 aa27.54■■■□□ 2
SMARCD3-212ENST00000485610 PLEKHD1A6NEE1 506 aa27.52■■■□□ 2
SMARCD3-212ENST00000485610 WDR7Q9Y4E6 1490 aa27.52■■■□□ 2
SMARCD3-212ENST00000485610 PPARGC1BQ86YN6 1023 aaKnown RBP27.51■■■□□ 2
SMARCD3-212ENST00000485610 ASXL2Q76L83 1435 aa27.5■■□□□ 1.99
SMARCD3-212ENST00000485610 NCOA2Q15596 1464 aa27.46■■□□□ 1.99
SMARCD3-212ENST00000485610 ITSN2Q9NZM3 1697 aa27.4■■□□□ 1.98
SMARCD3-212ENST00000485610 TTC37Q6PGP7 1564 aa27.39■■□□□ 1.97
SMARCD3-212ENST00000485610 ABCC10Q5T3U5 1492 aa27.38■■□□□ 1.97
SMARCD3-212ENST00000485610 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.38■■□□□ 1.97
SMARCD3-212ENST00000485610 CDC42BPAQ5VT25 1732 aa27.37■■□□□ 1.97
SMARCD3-212ENST00000485610 ABCA9Q8IUA7 1624 aa27.37■■□□□ 1.97
SMARCD3-212ENST00000485610 MYO5CQ9NQX4 1742 aa27.36■■□□□ 1.97
SMARCD3-212ENST00000485610 PHLDB1Q86UU1 1377 aa27.33■■□□□ 1.97
SMARCD3-212ENST00000485610 PREX2Q70Z35 1606 aa27.32■■□□□ 1.96
SMARCD3-212ENST00000485610 DIP2BQ9P265 1576 aa27.32■■□□□ 1.96
SMARCD3-212ENST00000485610 KCNH8Q96L42 1107 aa27.32■■□□□ 1.96
SMARCD3-212ENST00000485610 MYOM3Q5VTT5 1437 aa27.31■■□□□ 1.96
SMARCD3-212ENST00000485610 CCNB3Q8WWL7 1395 aa27.3■■□□□ 1.96
SMARCD3-212ENST00000485610 GLI2P10070 1586 aa27.29■■□□□ 1.96
SMARCD3-212ENST00000485610 CDC42BPBQ9Y5S2 1711 aa27.28■■□□□ 1.96
SMARCD3-212ENST00000485610 KIF13AQ9H1H9 1805 aa27.27■■□□□ 1.96
SMARCD3-212ENST00000485610 GPATCH8Q9UKJ3 1502 aaKnown RBP27.26■■□□□ 1.95
SMARCD3-212ENST00000485610 MAP3K4Q9Y6R4 1608 aa27.24■■□□□ 1.95
SMARCD3-212ENST00000485610 FGD6Q6ZV73 1430 aa27.23■■□□□ 1.95
SMARCD3-212ENST00000485610 ARAP3Q8WWN8 1544 aa27.22■■□□□ 1.95
SMARCD3-212ENST00000485610 MIA2Q96PC5 1412 aa27.22■■□□□ 1.95
SMARCD3-212ENST00000485610 RRBP1Q9P2E9 1410 aaKnown RBP27.22■■□□□ 1.95
SMARCD3-212ENST00000485610 PTPN23Q9H3S7 1636 aa27.21■■□□□ 1.95
SMARCD3-212ENST00000485610 ARHGAP5Q13017 1502 aa27.17■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms