RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 IQGAP2Q13576 1575 aa12.71□□□□□ -0.37
USP4-211ENST00000485450 ARHGEF11O15085 1522 aa12.69□□□□□ -0.38
USP4-211ENST00000485450 HRCP23327 699 aa12.67□□□□□ -0.38
USP4-211ENST00000485450 KIAA0556O60303 1618 aa12.67□□□□□ -0.38
USP4-211ENST00000485450 DNAJC5Q9H3Z4 198 aa12.65□□□□□ -0.38
USP4-211ENST00000485450 DISP1Q96F81 1524 aa12.64□□□□□ -0.39
USP4-211ENST00000485450 CARMIL1Q5VZK9 1371 aa12.63□□□□□ -0.39
USP4-211ENST00000485450 EFCAB5A4FU69 1503 aa12.63□□□□□ -0.39
USP4-211ENST00000485450 UHRF1BP1LA0JNW5 1464 aa12.62□□□□□ -0.39
USP4-211ENST00000485450 ARAP1Q96P48 1450 aa12.61□□□□□ -0.39
USP4-211ENST00000485450 ERCC6L2Q5T890 1561 aa12.61□□□□□ -0.39
USP4-211ENST00000485450 CHIC1Q5VXU3 224 aa12.61□□□□□ -0.39
USP4-211ENST00000485450 ABCA8O94911 1581 aa12.57□□□□□ -0.4
USP4-211ENST00000485450 ADCY10Q96PN6 1610 aa12.56□□□□□ -0.4
USP4-211ENST00000485450 OSCARQ8IYS5 282 aa12.56□□□□□ -0.4
USP4-211ENST00000485450 MAPKBP1O60336 1514 aa12.54□□□□□ -0.4
USP4-211ENST00000485450 SLC24A1O60721 1099 aa12.54□□□□□ -0.4
USP4-211ENST00000485450 SCAF1Q9H7N4 1312 aaKnown RBP12.53□□□□□ -0.4
USP4-211ENST00000485450 GOLGA3Q08378 1498 aa12.53□□□□□ -0.4
USP4-211ENST00000485450 KDM5BQ9UGL1 1544 aa12.51□□□□□ -0.41
USP4-211ENST00000485450 LRRIQ1Q96JM4 1722 aa12.51□□□□□ -0.41
USP4-211ENST00000485450 GLI2P10070 1586 aa12.48□□□□□ -0.41
USP4-211ENST00000485450 KIF13AQ9H1H9 1805 aa12.48□□□□□ -0.41
USP4-211ENST00000485450 TRIM41Q8WV44 630 aa12.48□□□□□ -0.41
USP4-211ENST00000485450 ABCC2Q92887 1545 aa12.47□□□□□ -0.41
USP4-211ENST00000485450 PRKCSHP14314 528 aaPredicted RBP12.45□□□□□ -0.42
USP4-211ENST00000485450 PRG4Q92954 1404 aaPredicted RBP12.44□□□□□ -0.42
USP4-211ENST00000485450 ZCCHC11Q5TAX3 1644 aaKnown RBP12.44□□□□□ -0.42
USP4-211ENST00000485450 RAPGEF6Q8TEU7 1601 aa12.44□□□□□ -0.42
USP4-211ENST00000485450 CSRNP3Q8WYN3 585 aa12.44□□□□□ -0.42
USP4-211ENST00000485450 CHMP7Q8WUX9 453 aaPredicted RBP12.44□□□□□ -0.42
USP4-211ENST00000485450 PPARGC1BQ86YN6 1023 aaKnown RBP12.43□□□□□ -0.42
USP4-211ENST00000485450 MAP3K4Q9Y6R4 1608 aa12.41□□□□□ -0.42
USP4-211ENST00000485450 PPRC1Q5VV67 1664 aaKnown RBP12.41□□□□□ -0.42
USP4-211ENST00000485450 TNIKQ9UKE5 1360 aa12.4□□□□□ -0.42
USP4-211ENST00000485450 ARHGAP35Q9NRY4 1499 aa12.39□□□□□ -0.43
USP4-211ENST00000485450 CFAP43Q8NDM7 1665 aa12.39□□□□□ -0.43
USP4-211ENST00000485450 DIP2BQ9P265 1576 aa12.38□□□□□ -0.43
USP4-211ENST00000485450 CARMIL2Q6F5E8 1435 aa12.38□□□□□ -0.43
USP4-211ENST00000485450 TTBK1Q5TCY1 1321 aaPredicted RBP12.37□□□□□ -0.43
USP4-211ENST00000485450 HECW1Q76N89 1606 aa12.35□□□□□ -0.43
USP4-211ENST00000485450 MAP3K1Q13233 1512 aa12.35□□□□□ -0.43
USP4-211ENST00000485450 JPH4Q96JJ6 628 aa12.34□□□□□ -0.43
USP4-211ENST00000485450 ABCA9Q8IUA7 1624 aa12.34□□□□□ -0.43
USP4-211ENST00000485450 UACAQ9BZF9 1416 aa12.32□□□□□ -0.44
USP4-211ENST00000485450 ARAP3Q8WWN8 1544 aa12.32□□□□□ -0.44
USP4-211ENST00000485450 NUP153P49790 1475 aaKnown RBP12.31□□□□□ -0.44
USP4-211ENST00000485450 FYCO1Q9BQS8 1478 aa12.31□□□□□ -0.44
USP4-211ENST00000485450 PCF11O94913 1555 aaKnown RBP12.3□□□□□ -0.44
USP4-211ENST00000485450 ABCC10Q5T3U5 1492 aa12.28□□□□□ -0.44
USP4-211ENST00000485450 CASKIN1Q8WXD9 1431 aa12.27□□□□□ -0.45
USP4-211ENST00000485450 FMN1Q68DA7 1419 aa12.25□□□□□ -0.45
USP4-211ENST00000485450 CCDC18Q5T9S5 1454 aa12.25□□□□□ -0.45
USP4-211ENST00000485450 PTPRGP23470 1445 aa12.24□□□□□ -0.45
USP4-211ENST00000485450 PLB1Q6P1J6 1458 aa12.24□□□□□ -0.45
USP4-211ENST00000485450 ATP10BO94823 1461 aa12.23□□□□□ -0.45
USP4-211ENST00000485450 CFAP74Q9C0B2 1584 aa12.22□□□□□ -0.45
USP4-211ENST00000485450 EPRSP07814 1512 aaKnown RBP12.22□□□□□ -0.45
USP4-211ENST00000485450 MAGI3Q5TCQ9 1506 aa12.21□□□□□ -0.45
USP4-211ENST00000485450 WDR7Q9Y4E6 1490 aa12.21□□□□□ -0.45
USP4-211ENST00000485450 PREX2Q70Z35 1606 aa12.19□□□□□ -0.46
USP4-211ENST00000485450 BCL11AQ9H165 835 aa12.19□□□□□ -0.46
USP4-211ENST00000485450 CEP162Q5TB80 1403 aa12.17□□□□□ -0.46
USP4-211ENST00000485450 CDC42BPAQ5VT25 1732 aa12.17□□□□□ -0.46
USP4-211ENST00000485450 MYO5CQ9NQX4 1742 aa12.17□□□□□ -0.46
USP4-211ENST00000485450 FAM9AQ8IZU1 332 aaPredicted RBP12.17□□□□□ -0.46
USP4-211ENST00000485450 FHOD3Q2V2M9 1422 aa12.17□□□□□ -0.46
USP4-211ENST00000485450 FBLN2P98095 1184 aa12.16□□□□□ -0.46
USP4-211ENST00000485450 TIAM1Q13009 1591 aa12.16□□□□□ -0.46
USP4-211ENST00000485450 CDC42BPBQ9Y5S2 1711 aa12.16□□□□□ -0.46
USP4-211ENST00000485450 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.15□□□□□ -0.46
USP4-211ENST00000485450 ASXL2Q76L83 1435 aa12.15□□□□□ -0.47
USP4-211ENST00000485450 TTC37Q6PGP7 1564 aa12.15□□□□□ -0.47
USP4-211ENST00000485450 CLIP1P30622 1438 aa12.14□□□□□ -0.47
USP4-211ENST00000485450 RICTORQ6R327 1708 aa12.14□□□□□ -0.47
USP4-211ENST00000485450 FRMPD1Q5SYB0 1578 aa12.14□□□□□ -0.47
USP4-211ENST00000485450 EHBP1L1Q8N3D4 1523 aa12.13□□□□□ -0.47
USP4-211ENST00000485450 KIF14Q15058 1648 aa12.13□□□□□ -0.47
USP4-211ENST00000485450 ITSN2Q9NZM3 1697 aa12.13□□□□□ -0.47
USP4-211ENST00000485450 ZMYM4Q5VZL5 1548 aa12.13□□□□□ -0.47
USP4-211ENST00000485450 BCORL1Q5H9F3 1711 aa12.12□□□□□ -0.47
USP4-211ENST00000485450 VPS8Q8N3P4 1428 aa12.12□□□□□ -0.47
USP4-211ENST00000485450 REREQ9P2R6 1566 aa12.1□□□□□ -0.47
USP4-211ENST00000485450 PCGF6Q9BYE7 350 aa12.1□□□□□ -0.47
USP4-211ENST00000485450 CDK13Q14004 1512 aaKnown RBP12.08□□□□□ -0.47
USP4-211ENST00000485450 KDM5CP41229 1560 aa12.08□□□□□ -0.48
USP4-211ENST00000485450 NEO1Q92859 1461 aa12.08□□□□□ -0.48
USP4-211ENST00000485450 APLP2Q06481 763 aa12.08□□□□□ -0.48
USP4-211ENST00000485450 SUPT6HQ7KZ85 1726 aaKnown RBP12.08□□□□□ -0.48
USP4-211ENST00000485450 CROCC2H7BZ55 1655 aa12.07□□□□□ -0.48
USP4-211ENST00000485450 PHLDB1Q86UU1 1377 aa12.07□□□□□ -0.48
USP4-211ENST00000485450 TROQ12816 1431 aaPredicted RBP12.06□□□□□ -0.48
USP4-211ENST00000485450 MAST1Q9Y2H9 1570 aa12.04□□□□□ -0.48
USP4-211ENST00000485450 TEX14Q8IWB6 1497 aa12.04□□□□□ -0.48
USP4-211ENST00000485450 ABCC1P33527 1531 aa12.03□□□□□ -0.48
USP4-211ENST00000485450 ARHGEF5Q12774 1597 aa12.02□□□□□ -0.48
USP4-211ENST00000485450 INO80Q9ULG1 1556 aaPredicted RBP12.01□□□□□ -0.49
USP4-211ENST00000485450 SAMD9LQ8IVG5 1584 aa12□□□□□ -0.49
USP4-211ENST00000485450 LRRC9Q6ZRR7 1453 aa12□□□□□ -0.49
USP4-211ENST00000485450 TCOF1Q13428 1488 aaKnown RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms