RNA–Protein interactions for RNA: ENST00000480539.1

ABCF3-213, Transcript of ATP binding cassette subfamily F member 3, humanhuman

TSL 2

Gene ABCF3, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF3-213ENST00000480539 PRXQ9BXM0 1461 aa25.29■■□□□ 1.64
ABCF3-213ENST00000480539 CSRNP3Q8WYN3 585 aa25.25■■□□□ 1.63
ABCF3-213ENST00000480539 SHROOM2Q13796 1616 aa25.24■■□□□ 1.63
ABCF3-213ENST00000480539 KIAA0586Q9BVV6 1533 aa25.22■■□□□ 1.63
ABCF3-213ENST00000480539 ERCC6L2Q5T890 1561 aa25.18■■□□□ 1.62
ABCF3-213ENST00000480539 IQGAP2Q13576 1575 aa25.17■■□□□ 1.62
ABCF3-213ENST00000480539 CTTNBP2Q8WZ74 1663 aa25.16■■□□□ 1.62
ABCF3-213ENST00000480539 ARAP1Q96P48 1450 aa25.15■■□□□ 1.62
ABCF3-213ENST00000480539 KIF21BO75037 1637 aa25.14■■□□□ 1.61
ABCF3-213ENST00000480539 PRG4Q92954 1404 aaPredicted RBP25.12■■□□□ 1.61
ABCF3-213ENST00000480539 JPH4Q96JJ6 628 aa25.09■■□□□ 1.61
ABCF3-213ENST00000480539 EHMT2Q96KQ7 1210 aa25.01■■□□□ 1.59
ABCF3-213ENST00000480539 CYB5RLQ6IPT4 315 aa25■■□□□ 1.59
ABCF3-213ENST00000480539 GOLGA3Q08378 1498 aa25■■□□□ 1.59
ABCF3-213ENST00000480539 UGGT2Q9NYU1 1516 aa25■■□□□ 1.59
ABCF3-213ENST00000480539 DISP1Q96F81 1524 aa24.96■■□□□ 1.59
ABCF3-213ENST00000480539 KIAA0556O60303 1618 aa24.94■■□□□ 1.58
ABCF3-213ENST00000480539 CARMIL2Q6F5E8 1435 aa24.94■■□□□ 1.58
ABCF3-213ENST00000480539 UBTFP17480 764 aaKnown RBP24.85■■□□□ 1.57
ABCF3-213ENST00000480539 TNIKQ9UKE5 1360 aa24.84■■□□□ 1.57
ABCF3-213ENST00000480539 TTBK1Q5TCY1 1321 aaPredicted RBP24.84■■□□□ 1.57
ABCF3-213ENST00000480539 SAMD9Q5K651 1589 aa24.83■■□□□ 1.57
ABCF3-213ENST00000480539 RANGAP1P46060 587 aaPredicted RBP24.81■■□□□ 1.56
ABCF3-213ENST00000480539 PTPRGP23470 1445 aa24.8■■□□□ 1.56
ABCF3-213ENST00000480539 ADCY10Q96PN6 1610 aa24.76■■□□□ 1.55
ABCF3-213ENST00000480539 EFCAB5A4FU69 1503 aa24.73■■□□□ 1.55
ABCF3-213ENST00000480539 P3H3Q8IVL6 736 aa24.73■■□□□ 1.55
ABCF3-213ENST00000480539 FHOD3Q2V2M9 1422 aa24.7■■□□□ 1.55
ABCF3-213ENST00000480539 ABCC2Q92887 1545 aa24.66■■□□□ 1.54
ABCF3-213ENST00000480539 UACAQ9BZF9 1416 aa24.66■■□□□ 1.54
ABCF3-213ENST00000480539 PLB1Q6P1J6 1458 aa24.65■■□□□ 1.54
ABCF3-213ENST00000480539 ARHGAP35Q9NRY4 1499 aa24.64■■□□□ 1.54
ABCF3-213ENST00000480539 UHRF1BP1LA0JNW5 1464 aa24.63■■□□□ 1.53
ABCF3-213ENST00000480539 ABCA8O94911 1581 aa24.63■■□□□ 1.53
ABCF3-213ENST00000480539 LOC105371045A0A1W2PR82 267 aa24.56■■□□□ 1.52
ABCF3-213ENST00000480539 RAPGEF6Q8TEU7 1601 aa24.55■■□□□ 1.52
ABCF3-213ENST00000480539 CLIP1P30622 1438 aa24.54■■□□□ 1.52
ABCF3-213ENST00000480539 ZCCHC11Q5TAX3 1644 aaKnown RBP24.53■■□□□ 1.52
ABCF3-213ENST00000480539 MAPKBP1O60336 1514 aa24.52■■□□□ 1.52
ABCF3-213ENST00000480539 NPM1P06748 294 aaKnown RBP eCLIP24.52■■□□□ 1.52
ABCF3-213ENST00000480539 KDM5BQ9UGL1 1544 aa24.51■■□□□ 1.51
ABCF3-213ENST00000480539 CEP162Q5TB80 1403 aa24.5■■□□□ 1.51
ABCF3-213ENST00000480539 FMN1Q68DA7 1419 aa24.46■■□□□ 1.51
ABCF3-213ENST00000480539 TRHP20396 242 aaPredicted RBP24.45■■□□□ 1.5
ABCF3-213ENST00000480539 NUP153P49790 1475 aaKnown RBP24.45■■□□□ 1.5
ABCF3-213ENST00000480539 ARID3CA6NKF2 412 aa24.44■■□□□ 1.5
ABCF3-213ENST00000480539 ASXL2Q76L83 1435 aa24.44■■□□□ 1.5
ABCF3-213ENST00000480539 PCF11O94913 1555 aaKnown RBP24.41■■□□□ 1.5
ABCF3-213ENST00000480539 HECW1Q76N89 1606 aa24.4■■□□□ 1.5
ABCF3-213ENST00000480539 DIP2BQ9P265 1576 aa24.4■■□□□ 1.5
ABCF3-213ENST00000480539 ATP10BO94823 1461 aa24.38■■□□□ 1.49
ABCF3-213ENST00000480539 KIF13AQ9H1H9 1805 aa24.38■■□□□ 1.49
ABCF3-213ENST00000480539 ABCC10Q5T3U5 1492 aa24.37■■□□□ 1.49
ABCF3-213ENST00000480539 WDR7Q9Y4E6 1490 aa24.35■■□□□ 1.49
ABCF3-213ENST00000480539 CDK13Q14004 1512 aaKnown RBP24.35■■□□□ 1.49
ABCF3-213ENST00000480539 ATP1B4Q9UN42 357 aaPredicted RBP24.31■■□□□ 1.48
ABCF3-213ENST00000480539 CASKIN1Q8WXD9 1431 aa24.3■■□□□ 1.48
ABCF3-213ENST00000480539 LRRIQ1Q96JM4 1722 aa24.3■■□□□ 1.48
ABCF3-213ENST00000480539 FYCO1Q9BQS8 1478 aa24.29■■□□□ 1.48
ABCF3-213ENST00000480539 EPRSP07814 1512 aaKnown RBP24.29■■□□□ 1.48
ABCF3-213ENST00000480539 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.28■■□□□ 1.48
ABCF3-213ENST00000480539 FAM69CQ0P6D2 419 aa24.28■■□□□ 1.48
ABCF3-213ENST00000480539 HNRNPUL2Q1KMD3 747 aaKnown RBP24.28■■□□□ 1.48
ABCF3-213ENST00000480539 GLI2P10070 1586 aa24.24■■□□□ 1.47
ABCF3-213ENST00000480539 CCDC18Q5T9S5 1454 aa24.2■■□□□ 1.47
ABCF3-213ENST00000480539 MAP3K4Q9Y6R4 1608 aa24.18■■□□□ 1.46
ABCF3-213ENST00000480539 KCNH8Q96L42 1107 aa24.18■■□□□ 1.46
ABCF3-213ENST00000480539 VPS8Q8N3P4 1428 aa24.18■■□□□ 1.46
ABCF3-213ENST00000480539 TSPOAP1O95153 1857 aa24.17■■□□□ 1.46
ABCF3-213ENST00000480539 CFAP43Q8NDM7 1665 aa24.14■■□□□ 1.45
ABCF3-213ENST00000480539 PPRC1Q5VV67 1664 aaKnown RBP24.13■■□□□ 1.45
ABCF3-213ENST00000480539 PLEKHD1A6NEE1 506 aa24.12■■□□□ 1.45
ABCF3-213ENST00000480539 ABCA9Q8IUA7 1624 aa24.11■■□□□ 1.45
ABCF3-213ENST00000480539 MAGI3Q5TCQ9 1506 aa24.1■■□□□ 1.45
ABCF3-213ENST00000480539 TTC37Q6PGP7 1564 aa24.08■■□□□ 1.45
ABCF3-213ENST00000480539 TROQ12816 1431 aaPredicted RBP24.08■■□□□ 1.44
ABCF3-213ENST00000480539 KIF14Q15058 1648 aa24.07■■□□□ 1.44
ABCF3-213ENST00000480539 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.06■■□□□ 1.44
ABCF3-213ENST00000480539 CDK11AQ9UQ88 783 aaPredicted RBP24.06■■□□□ 1.44
ABCF3-213ENST00000480539 CD109Q6YHK3 1445 aa24.06■■□□□ 1.44
ABCF3-213ENST00000480539 TEX14Q8IWB6 1497 aa24.01■■□□□ 1.43
ABCF3-213ENST00000480539 TIAM1Q13009 1591 aa24.01■■□□□ 1.43
ABCF3-213ENST00000480539 EHBP1L1Q8N3D4 1523 aa23.98■■□□□ 1.43
ABCF3-213ENST00000480539 MTUS2Q5JR59 1369 aa23.96■■□□□ 1.43
ABCF3-213ENST00000480539 KDM6BO15054 1643 aa23.95■■□□□ 1.43
ABCF3-213ENST00000480539 MYO5CQ9NQX4 1742 aa23.93■■□□□ 1.42
ABCF3-213ENST00000480539 MAP3K1Q13233 1512 aa23.89■■□□□ 1.41
ABCF3-213ENST00000480539 CFAP74Q9C0B2 1584 aa23.88■■□□□ 1.41
ABCF3-213ENST00000480539 PREX2Q70Z35 1606 aa23.88■■□□□ 1.41
ABCF3-213ENST00000480539 FANCAO15360 1455 aa23.87■■□□□ 1.41
ABCF3-213ENST00000480539 LRRC9Q6ZRR7 1453 aa23.87■■□□□ 1.41
ABCF3-213ENST00000480539 NEO1Q92859 1461 aa23.86■■□□□ 1.41
ABCF3-213ENST00000480539 PLCH2O75038 1416 aa23.85■■□□□ 1.41
ABCF3-213ENST00000480539 ARHGAP5Q13017 1502 aa23.84■■□□□ 1.41
ABCF3-213ENST00000480539 ARAP3Q8WWN8 1544 aa23.84■■□□□ 1.41
ABCF3-213ENST00000480539 CDC42BPAQ5VT25 1732 aa23.84■■□□□ 1.41
ABCF3-213ENST00000480539 COL17A1Q9UMD9 1497 aaPredicted RBP23.84■■□□□ 1.41
ABCF3-213ENST00000480539 SUPT6HQ7KZ85 1726 aaKnown RBP23.84■■□□□ 1.41
ABCF3-213ENST00000480539 CDC42BPBQ9Y5S2 1711 aa23.82■■□□□ 1.4
ABCF3-213ENST00000480539 APLP2Q06481 763 aa23.8■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms