RNA–Protein interactions for RNA: ENST00000479941.1

ATG4B-219, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 2

Gene ATG4B, Length 374 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-219ENST00000479941 RIMBP3BA6NNM3 1639 aa18■□□□□ 0.47
ATG4B-219ENST00000479941 RIMBP3Q9UFD9 1639 aa18■□□□□ 0.47
ATG4B-219ENST00000479941 FAM9AQ8IZU1 332 aaPredicted RBP17.99■□□□□ 0.47
ATG4B-219ENST00000479941 JPH4Q96JJ6 628 aa17.96■□□□□ 0.47
ATG4B-219ENST00000479941 SHROOM2Q13796 1616 aa17.95■□□□□ 0.46
ATG4B-219ENST00000479941 PRG4Q92954 1404 aaPredicted RBP17.9■□□□□ 0.46
ATG4B-219ENST00000479941 IQGAP2Q13576 1575 aa17.89■□□□□ 0.45
ATG4B-219ENST00000479941 ARAP1Q96P48 1450 aa17.88■□□□□ 0.45
ATG4B-219ENST00000479941 CYB5RLQ6IPT4 315 aa17.88■□□□□ 0.45
ATG4B-219ENST00000479941 ERCC6L2Q5T890 1561 aa17.87■□□□□ 0.45
ATG4B-219ENST00000479941 KIF21BO75037 1637 aa17.87■□□□□ 0.45
ATG4B-219ENST00000479941 CTTNBP2Q8WZ74 1663 aa17.83■□□□□ 0.45
ATG4B-219ENST00000479941 CARMIL2Q6F5E8 1435 aa17.82■□□□□ 0.44
ATG4B-219ENST00000479941 UGGT2Q9NYU1 1516 aa17.81■□□□□ 0.44
ATG4B-219ENST00000479941 GOLGA3Q08378 1498 aa17.79■□□□□ 0.44
ATG4B-219ENST00000479941 DISP1Q96F81 1524 aa17.76■□□□□ 0.43
ATG4B-219ENST00000479941 UBTFP17480 764 aaKnown RBP17.74■□□□□ 0.43
ATG4B-219ENST00000479941 TNIKQ9UKE5 1360 aa17.74■□□□□ 0.43
ATG4B-219ENST00000479941 EHMT2Q96KQ7 1210 aa17.72■□□□□ 0.43
ATG4B-219ENST00000479941 KIAA0556O60303 1618 aa17.72■□□□□ 0.43
ATG4B-219ENST00000479941 PTPRGP23470 1445 aa17.72■□□□□ 0.43
ATG4B-219ENST00000479941 TTBK1Q5TCY1 1321 aaPredicted RBP17.66■□□□□ 0.42
ATG4B-219ENST00000479941 SAMD9Q5K651 1589 aa17.64■□□□□ 0.41
ATG4B-219ENST00000479941 RANGAP1P46060 587 aaPredicted RBP17.63■□□□□ 0.41
ATG4B-219ENST00000479941 P3H3Q8IVL6 736 aa17.61■□□□□ 0.41
ATG4B-219ENST00000479941 EFCAB5A4FU69 1503 aa17.61■□□□□ 0.41
ATG4B-219ENST00000479941 NPM1P06748 294 aaKnown RBP eCLIP17.6■□□□□ 0.41
ATG4B-219ENST00000479941 UACAQ9BZF9 1416 aa17.6■□□□□ 0.41
ATG4B-219ENST00000479941 ADCY10Q96PN6 1610 aa17.58■□□□□ 0.41
ATG4B-219ENST00000479941 UHRF1BP1LA0JNW5 1464 aa17.58■□□□□ 0.41
ATG4B-219ENST00000479941 ABCC2Q92887 1545 aa17.56■□□□□ 0.4
ATG4B-219ENST00000479941 FHOD3Q2V2M9 1422 aa17.55■□□□□ 0.4
ATG4B-219ENST00000479941 PLB1Q6P1J6 1458 aa17.53■□□□□ 0.4
ATG4B-219ENST00000479941 ARHGAP35Q9NRY4 1499 aa17.52■□□□□ 0.4
ATG4B-219ENST00000479941 ABCA8O94911 1581 aa17.51■□□□□ 0.39
ATG4B-219ENST00000479941 KDM5BQ9UGL1 1544 aa17.49■□□□□ 0.39
ATG4B-219ENST00000479941 MAPKBP1O60336 1514 aa17.48■□□□□ 0.39
ATG4B-219ENST00000479941 LOC105371045A0A1W2PR82 267 aa17.48■□□□□ 0.39
ATG4B-219ENST00000479941 TRHP20396 242 aaPredicted RBP17.48■□□□□ 0.39
ATG4B-219ENST00000479941 CLIP1P30622 1438 aa17.47■□□□□ 0.39
ATG4B-219ENST00000479941 FMN1Q68DA7 1419 aa17.47■□□□□ 0.39
ATG4B-219ENST00000479941 RAPGEF6Q8TEU7 1601 aa17.44■□□□□ 0.38
ATG4B-219ENST00000479941 ZCCHC11Q5TAX3 1644 aaKnown RBP17.42■□□□□ 0.38
ATG4B-219ENST00000479941 CEP162Q5TB80 1403 aa17.41■□□□□ 0.38
ATG4B-219ENST00000479941 ASXL2Q76L83 1435 aa17.4■□□□□ 0.38
ATG4B-219ENST00000479941 NUP153P49790 1475 aaKnown RBP17.39■□□□□ 0.37
ATG4B-219ENST00000479941 ABCC10Q5T3U5 1492 aa17.39■□□□□ 0.37
ATG4B-219ENST00000479941 ATP10BO94823 1461 aa17.38■□□□□ 0.37
ATG4B-219ENST00000479941 FAM69CQ0P6D2 419 aa17.37■□□□□ 0.37
ATG4B-219ENST00000479941 ARID3CA6NKF2 412 aa17.36■□□□□ 0.37
ATG4B-219ENST00000479941 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.35■□□□□ 0.37
ATG4B-219ENST00000479941 HNRNPUL2Q1KMD3 747 aaKnown RBP17.35■□□□□ 0.37
ATG4B-219ENST00000479941 DIP2BQ9P265 1576 aa17.34■□□□□ 0.37
ATG4B-219ENST00000479941 WDR7Q9Y4E6 1490 aa17.34■□□□□ 0.37
ATG4B-219ENST00000479941 HECW1Q76N89 1606 aa17.33■□□□□ 0.37
ATG4B-219ENST00000479941 ATP1B4Q9UN42 357 aaPredicted RBP17.33■□□□□ 0.36
ATG4B-219ENST00000479941 CASKIN1Q8WXD9 1431 aa17.32■□□□□ 0.36
ATG4B-219ENST00000479941 KIF13AQ9H1H9 1805 aa17.32■□□□□ 0.36
ATG4B-219ENST00000479941 EPRSP07814 1512 aaKnown RBP17.31■□□□□ 0.36
ATG4B-219ENST00000479941 GLI2P10070 1586 aa17.3■□□□□ 0.36
ATG4B-219ENST00000479941 PLEKHD1A6NEE1 506 aa17.28■□□□□ 0.36
ATG4B-219ENST00000479941 KCNH8Q96L42 1107 aa17.28■□□□□ 0.36
ATG4B-219ENST00000479941 FYCO1Q9BQS8 1478 aa17.28■□□□□ 0.36
ATG4B-219ENST00000479941 PCF11O94913 1555 aaKnown RBP17.28■□□□□ 0.36
ATG4B-219ENST00000479941 CDK11AQ9UQ88 783 aaPredicted RBP17.26■□□□□ 0.35
ATG4B-219ENST00000479941 CDK13Q14004 1512 aaKnown RBP17.26■□□□□ 0.35
ATG4B-219ENST00000479941 CCDC18Q5T9S5 1454 aa17.24■□□□□ 0.35
ATG4B-219ENST00000479941 VPS8Q8N3P4 1428 aa17.21■□□□□ 0.34
ATG4B-219ENST00000479941 LRRIQ1Q96JM4 1722 aa17.19■□□□□ 0.34
ATG4B-219ENST00000479941 MAP3K4Q9Y6R4 1608 aa17.19■□□□□ 0.34
ATG4B-219ENST00000479941 CFAP43Q8NDM7 1665 aa17.18■□□□□ 0.34
ATG4B-219ENST00000479941 CD109Q6YHK3 1445 aa17.18■□□□□ 0.34
ATG4B-219ENST00000479941 TROQ12816 1431 aaPredicted RBP17.16■□□□□ 0.34
ATG4B-219ENST00000479941 ABCA9Q8IUA7 1624 aa17.16■□□□□ 0.34
ATG4B-219ENST00000479941 TSPOAP1O95153 1857 aa17.16■□□□□ 0.34
ATG4B-219ENST00000479941 TEX14Q8IWB6 1497 aa17.15■□□□□ 0.34
ATG4B-219ENST00000479941 MAGI3Q5TCQ9 1506 aa17.14■□□□□ 0.33
ATG4B-219ENST00000479941 PPRC1Q5VV67 1664 aaKnown RBP17.13■□□□□ 0.33
ATG4B-219ENST00000479941 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.11■□□□□ 0.33
ATG4B-219ENST00000479941 KIF14Q15058 1648 aa17.1■□□□□ 0.33
ATG4B-219ENST00000479941 MTUS2Q5JR59 1369 aa17.08■□□□□ 0.32
ATG4B-219ENST00000479941 TTC37Q6PGP7 1564 aa17.07■□□□□ 0.32
ATG4B-219ENST00000479941 PHLDB1Q86UU1 1377 aa17.06■□□□□ 0.32
ATG4B-219ENST00000479941 MAP3K1Q13233 1512 aa17.06■□□□□ 0.32
ATG4B-219ENST00000479941 TIAM1Q13009 1591 aa17.05■□□□□ 0.32
ATG4B-219ENST00000479941 PLCH2O75038 1416 aa17.04■□□□□ 0.32
ATG4B-219ENST00000479941 APLP2Q06481 763 aa17.04■□□□□ 0.32
ATG4B-219ENST00000479941 NEO1Q92859 1461 aa17.04■□□□□ 0.32
ATG4B-219ENST00000479941 KDM6BO15054 1643 aa17.03■□□□□ 0.32
ATG4B-219ENST00000479941 EHBP1L1Q8N3D4 1523 aa17.03■□□□□ 0.32
ATG4B-219ENST00000479941 ARAP3Q8WWN8 1544 aa17.01■□□□□ 0.31
ATG4B-219ENST00000479941 FANCAO15360 1455 aa17■□□□□ 0.31
ATG4B-219ENST00000479941 EFCAB2Q5VUJ9 269 aa17■□□□□ 0.31
ATG4B-219ENST00000479941 LRRC9Q6ZRR7 1453 aa16.99■□□□□ 0.31
ATG4B-219ENST00000479941 MYO5CQ9NQX4 1742 aa16.99■□□□□ 0.31
ATG4B-219ENST00000479941 COL17A1Q9UMD9 1497 aaPredicted RBP16.99■□□□□ 0.31
ATG4B-219ENST00000479941 CFAP74Q9C0B2 1584 aa16.98■□□□□ 0.31
ATG4B-219ENST00000479941 AKNAQ7Z591 1439 aa16.98■□□□□ 0.31
ATG4B-219ENST00000479941 KANK4Q5T7N3 995 aaPredicted RBP16.96■□□□□ 0.31
ATG4B-219ENST00000479941 CCNB3Q8WWL7 1395 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 201.2 ms