RNA–Protein interactions for RNA: ENST00000479501.5

COL20A1-206, Transcript of collagen type XX alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL20A1, Length 4,536 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1-206ENST00000479501 HNRNPUQ00839 825 aaKnown RBP eCLIP19.65■□□□□ 0.74
COL20A1-206ENST00000479501 FKBP8Q14318 412 aa19.62■□□□□ 0.73
COL20A1-206ENST00000479501 CADPSQ9ULU8 1353 aa19.61■□□□□ 0.73
COL20A1-206ENST00000479501 PLEKHD1A6NEE1 506 aa19.61■□□□□ 0.73
COL20A1-206ENST00000479501 SIN3AQ96ST3 1273 aa19.6■□□□□ 0.73
COL20A1-206ENST00000479501 RAPGEF2Q9Y4G8 1499 aa19.6■□□□□ 0.73
COL20A1-206ENST00000479501 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.59■□□□□ 0.73
COL20A1-206ENST00000479501 EIF4G2P78344 907 aaKnown RBP eCLIP19.59■□□□□ 0.73
COL20A1-206ENST00000479501 FAM9BQ8IZU0 186 aa19.58■□□□□ 0.73
COL20A1-206ENST00000479501 CFDP1Q9UEE9 299 aaPredicted RBP19.55■□□□□ 0.72
COL20A1-206ENST00000479501 KDM2AQ9Y2K7 1162 aa19.54■□□□□ 0.72
COL20A1-206ENST00000479501 TDRD9Q8NDG6 1382 aaKnown RBP19.51■□□□□ 0.71
COL20A1-206ENST00000479501 NPM1P06748 294 aaKnown RBP eCLIP19.51■□□□□ 0.71
COL20A1-206ENST00000479501 PDS5BQ9NTI5 1447 aa19.49■□□□□ 0.71
COL20A1-206ENST00000479501 MRS2Q9HD23 443 aa19.49■□□□□ 0.71
COL20A1-206ENST00000479501 SETD5Q9C0A6 1442 aa19.46■□□□□ 0.71
COL20A1-206ENST00000479501 EIF4G1Q04637 1599 aaKnown RBP19.46■□□□□ 0.71
COL20A1-206ENST00000479501 ERCC6Q03468 1493 aa19.46■□□□□ 0.71
COL20A1-206ENST00000479501 TMC1Q8TDI8 760 aa19.45■□□□□ 0.7
COL20A1-206ENST00000479501 CHGAP10645 457 aaKnown RBP19.45■□□□□ 0.7
COL20A1-206ENST00000479501 KCNH8Q96L42 1107 aa19.45■□□□□ 0.7
COL20A1-206ENST00000479501 ANP32AP39687 249 aaKnown RBP19.45■□□□□ 0.7
COL20A1-206ENST00000479501 TIMELESSQ9UNS1 1208 aa19.44■□□□□ 0.7
COL20A1-206ENST00000479501 ARHGAP35Q9NRY4 1499 aa19.42■□□□□ 0.7
COL20A1-206ENST00000479501 FMN1Q68DA7 1419 aa19.4■□□□□ 0.7
COL20A1-206ENST00000479501 RAB3GAP2Q9H2M9 1393 aa19.39■□□□□ 0.69
COL20A1-206ENST00000479501 SALL2Q9Y467 1007 aaPredicted RBP19.35■□□□□ 0.69
COL20A1-206ENST00000479501 NCAPD3P42695 1498 aa19.35■□□□□ 0.69
COL20A1-206ENST00000479501 FHOD3Q2V2M9 1422 aa19.34■□□□□ 0.69
COL20A1-206ENST00000479501 EIF5BO60841 1220 aaKnown RBP19.34■□□□□ 0.69
COL20A1-206ENST00000479501 RGL3Q3MIN7 710 aa19.33■□□□□ 0.69
COL20A1-206ENST00000479501 CANXP27824 592 aaKnown RBP19.33■□□□□ 0.68
COL20A1-206ENST00000479501 FANCD2Q9BXW9 1451 aa19.32■□□□□ 0.68
COL20A1-206ENST00000479501 NPM2Q86SE8 214 aaKnown RBP19.3■□□□□ 0.68
COL20A1-206ENST00000479501 IGF1RP08069 1367 aa19.29■□□□□ 0.68
COL20A1-206ENST00000479501 NEFMP07197 916 aa19.27■□□□□ 0.67
COL20A1-206ENST00000479501 CARD11Q9BXL7 1154 aa19.25■□□□□ 0.67
COL20A1-206ENST00000479501 STAG3Q9UJ98 1225 aa19.25■□□□□ 0.67
COL20A1-206ENST00000479501 IRX6P78412 446 aaPredicted RBP19.25■□□□□ 0.67
COL20A1-206ENST00000479501 ESF1Q9H501 851 aaKnown RBP19.23■□□□□ 0.67
COL20A1-206ENST00000479501 DHX57Q6P158 1386 aaKnown RBP19.22■□□□□ 0.67
COL20A1-206ENST00000479501 FGD5Q6ZNL6 1462 aa19.21■□□□□ 0.67
COL20A1-206ENST00000479501 CCDC136Q96JN2 1154 aa19.21■□□□□ 0.67
COL20A1-206ENST00000479501 PPP1R15AO75807 674 aaPredicted RBP19.19■□□□□ 0.66
COL20A1-206ENST00000479501 WDR43Q15061 677 aaKnown RBP eCLIP19.19■□□□□ 0.66
COL20A1-206ENST00000479501 CARMIL2Q6F5E8 1435 aa19.18■□□□□ 0.66
COL20A1-206ENST00000479501 SYNJ1O43426 1573 aa19.18■□□□□ 0.66
COL20A1-206ENST00000479501 NBR1Q14596 966 aa19.18■□□□□ 0.66
COL20A1-206ENST00000479501 FOXD1Q16676 465 aa19.17■□□□□ 0.66
COL20A1-206ENST00000479501 MPHOSPH9Q99550 1183 aa19.16■□□□□ 0.66
COL20A1-206ENST00000479501 KIF21BO75037 1637 aa19.15■□□□□ 0.66
COL20A1-206ENST00000479501 ANP32EQ9BTT0 268 aa19.14■□□□□ 0.66
COL20A1-206ENST00000479501 HSPA5P11021 654 aaKnown RBP19.13■□□□□ 0.65
COL20A1-206ENST00000479501 SUPT16HQ9Y5B9 1047 aaKnown RBP19.13■□□□□ 0.65
COL20A1-206ENST00000479501 CFTRP13569 1480 aa19.13■□□□□ 0.65
COL20A1-206ENST00000479501 CCER2I3L3R5 266 aa19.12■□□□□ 0.65
COL20A1-206ENST00000479501 ZBTB47Q9UFB7 747 aaPredicted RBP19.12■□□□□ 0.65
COL20A1-206ENST00000479501 RAD54L2Q9Y4B4 1467 aa19.12■□□□□ 0.65
COL20A1-206ENST00000479501 PKD2Q13563 968 aa19.12■□□□□ 0.65
COL20A1-206ENST00000479501 DCAF11Q8TEB1 546 aa19.11■□□□□ 0.65
COL20A1-206ENST00000479501 SENP3-EIF4A1A0A087X0R7 540 aa19.08■□□□□ 0.65
COL20A1-206ENST00000479501 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.07■□□□□ 0.64
COL20A1-206ENST00000479501 CDCA8Q53HL2 280 aa19.06■□□□□ 0.64
COL20A1-206ENST00000479501 JPH4Q96JJ6 628 aa19.06■□□□□ 0.64
COL20A1-206ENST00000479501 GAPVD1Q14C86 1478 aa19.05■□□□□ 0.64
COL20A1-206ENST00000479501 ERICH3Q5RHP9 1530 aa19.05■□□□□ 0.64
COL20A1-206ENST00000479501 KNSTRNQ9Y448 316 aa19.04■□□□□ 0.64
COL20A1-206ENST00000479501 CCDC18Q5T9S5 1454 aa19.03■□□□□ 0.64
COL20A1-206ENST00000479501 BCL11AQ9H165 835 aa19.03■□□□□ 0.64
COL20A1-206ENST00000479501 L3MBTL2Q969R5 705 aa19.03■□□□□ 0.64
COL20A1-206ENST00000479501 PRXQ9BXM0 1461 aa19.03■□□□□ 0.64
COL20A1-206ENST00000479501 BICRAQ9NZM4 1560 aa19.02■□□□□ 0.64
COL20A1-206ENST00000479501 ANKRD30AQ9BXX3 1397 aa19.02■□□□□ 0.64
COL20A1-206ENST00000479501 ARAP1Q96P48 1450 aa19.02■□□□□ 0.64
COL20A1-206ENST00000479501 SLC24A1O60721 1099 aa19.01■□□□□ 0.63
COL20A1-206ENST00000479501 NUP155O75694 1391 aa19.01■□□□□ 0.63
COL20A1-206ENST00000479501 TOP2BQ02880 1626 aa19■□□□□ 0.63
COL20A1-206ENST00000479501 HMGXB3Q12766 1538 aa19■□□□□ 0.63
COL20A1-206ENST00000479501 SENP3Q9H4L4 574 aaPredicted RBP18.98■□□□□ 0.63
COL20A1-206ENST00000479501 GLIPR1L2Q4G1C9 344 aa18.98■□□□□ 0.63
COL20A1-206ENST00000479501 PHLDB1Q86UU1 1377 aa18.97■□□□□ 0.63
COL20A1-206ENST00000479501 PLPPR3Q6T4P5 718 aa18.96■□□□□ 0.63
COL20A1-206ENST00000479501 CUX1P39880 1505 aa18.96■□□□□ 0.63
COL20A1-206ENST00000479501 LRRC9Q6ZRR7 1453 aa18.95■□□□□ 0.62
COL20A1-206ENST00000479501 HNRNPMP52272 730 aaKnown RBP eCLIP18.93■□□□□ 0.62
COL20A1-206ENST00000479501 EFCAB2Q5VUJ9 269 aa18.93■□□□□ 0.62
COL20A1-206ENST00000479501 TMF1P82094 1093 aa18.93■□□□□ 0.62
COL20A1-206ENST00000479501 PPP4R2Q9NY27 417 aa18.92■□□□□ 0.62
COL20A1-206ENST00000479501 CC2D1BQ5T0F9 858 aaKnown RBP18.91■□□□□ 0.62
COL20A1-206ENST00000479501 FGD6Q6ZV73 1430 aa18.91■□□□□ 0.62
COL20A1-206ENST00000479501 ANP32BQ92688 251 aaKnown RBP18.89■□□□□ 0.61
COL20A1-206ENST00000479501 RSPH4AQ5TD94 716 aa18.89■□□□□ 0.61
COL20A1-206ENST00000479501 KANK1Q14678 1352 aa18.89■□□□□ 0.61
COL20A1-206ENST00000479501 CASKIN1Q8WXD9 1431 aa18.88■□□□□ 0.61
COL20A1-206ENST00000479501 NESP48681 1621 aa18.87■□□□□ 0.61
COL20A1-206ENST00000479501 RRBP1Q9P2E9 1410 aaKnown RBP18.87■□□□□ 0.61
COL20A1-206ENST00000479501 UPF2Q9HAU5 1272 aaKnown RBP18.86■□□□□ 0.61
COL20A1-206ENST00000479501 AQRO60306 1485 aaKnown RBP eCLIP18.86■□□□□ 0.61
COL20A1-206ENST00000479501 MYOM3Q5VTT5 1437 aa18.86■□□□□ 0.61
COL20A1-206ENST00000479501 CFAP53Q96M91 514 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms